FvH4_6g28332

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000268
Physical Location & Seq
Forward (+)
21827874 .. 21829347
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28332.t1

Sequence Viewer

Length: 1008 bp
ATGTCCAGCAACAAGACACTCAATTTGCAGTGGCTTGGTTACTTCAGGGGTCCTTTTAATTACGACGATGATGATTGTTATATCCTAAGTTTCATATTTGAAGAATTTGATAACGAGTTTATAGTTTTCAGAACAGATAGCGTCCACCTAACTCGGGGTGATATAAGATGTTTAGATCCGGGACAACTTGTTAGTAATGCTCTTATAACTGCAGTCCAATCAATTTTGTGGGCGCTTGGGTCTCCTCAATGGTTCATTGGTCCATATCTTTCGGAGTCCTCAATGTTCGCACAAGATCGTATGAAATTATCAGAGTTTGCACTCACGGCGAAAGAGACTTTCAACTATGATTTCCGATCCACTGTATTTGAGAAATGTGAAAAGATTTTCATTCCCCTCCTAGATAAAGGCATTCCTAGGAATCATTGGTTCTTGATGGTAATAAAAATACCAAGTAAGGAAGTTGAGATATGGGATAGTTTGCCTTGTCGGACACGCGAGACTGCTCGAAATGAACTAGCTTCTATTTTGTTAAAAACACTGGACATCATGTTTGAGGATGAGATTTACATATTTTTTCATGAAAGATGGTTATTCTCTTCATTTAAAATTTTTCGTCCCGGTTGTGTTCCTGTACAACCAAATGATTTTGATTGTGGCATTTATACTATAAAATTCATGGAAGATTTTGAGAATGCATCCAAGGCAGGGGATAAGTTTGATTCTGAGACCGAGCATTTACGCATAGCTACGAAGTTGGTTAAGCATCCAGACAACCAAGCGCGTGTCGCTATTGACAAAGCAATACCTCACCAAGAAGCAGAAGACAGGACCATGAAACTACCCAAAAAAAGGAAGAGAAAACAAGAGGACATAGCACCAATCGATAATGACATAGTCTTGCATACAAACCAAGTACATGCCAAAACCCAAGTACATGCCAAAACCCAGGTACATGCCAAAAGGGGTCGTGGTCGACCTCTTGGCTCGATGAACAAGAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

336

Amino Acids

39.02

Weight (kDa)

7.14

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 119 - 230 1.3e-16 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AccI GTMKAC 1 cut(s) 976
AccII CGCG 2 cut(s) 498, 784
AclWI GGATC 2 cut(s) 170, 351
AcsI RAATTY 3 cut(s) 104, 609, 674
AcuI CTGAAG 1 cut(s) 28
AfaI GTAC 4 cut(s) 636, 918, 936, 954
AfiI CCNNNNNNNGG 3 cut(s) 154, 708, 852
AgsI TTSAA 2 cut(s) 101, 343
AjnI CCWGG 1 cut(s) 948
AluBI AGCT 2 cut(s) 521, 749
AluI AGCT 2 cut(s) 521, 749
Alw26I GTCTC 4 cut(s) 246, 329, 494, 722
AlwI GGATC 2 cut(s) 170, 351
Ama87I CYCGRG 1 cut(s) 153
ApoI RAATTY 3 cut(s) 104, 609, 674
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 536, 568
AspA2I CCTAGG 1 cut(s) 416
AspLEI GCGC 2 cut(s) 235, 784
AspS9I GGNCC 3 cut(s) 50, 260, 831
AsuC2I CCSGG 2 cut(s) 180, 621
AsuHPI GGTGA 2 cut(s) 170, 803
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 3 cut(s) 50, 260, 831
AvrII CCTAGG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 831
BccI CCATC 2 cut(s) 430, 582
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 950
BcnI CCSGG 2 cut(s) 180, 621
BcoDI GTCTC 4 cut(s) 246, 329, 494, 722
BfaI CTAG 3 cut(s) 401, 417, 518
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 236
BlnI CCTAGG 1 cut(s) 416
Bme1390I CCNGG 3 cut(s) 180, 621, 950
Bme18I GGWCC 3 cut(s) 50, 260, 831
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 50, 260, 831
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 3 cut(s) 180, 621, 950
BmsI GCATC 2 cut(s) 707, 775
BpiI GAAGAC 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 180, 621
Bsa29I ATCGAT 1 cut(s) 885
BsaI GGTCTC 2 cut(s) 246, 722
BsaJI CCNNGG 3 cut(s) 416, 702, 948
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 708, 852
Bse1I ACTGG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 950
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 3 cut(s) 416, 702, 948
BseGI GGATG 3 cut(s) 565, 698, 766
BseLI CCNNNNNNNGG 3 cut(s) 154, 708, 852
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 498, 784
BshVI ATCGAT 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 179, 621
BslFI GGGAC 2 cut(s) 195, 603
BslI CCNNNNNNNGG 3 cut(s) 154, 708, 852
BsmAI GTCTC 4 cut(s) 246, 329, 494, 722
BsmFI GGGAC 2 cut(s) 195, 603
BsmI GAATGC 2 cut(s) 411, 700
Bso31I GGTCTC 2 cut(s) 246, 722
BsoBI CYCGRG 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 634
Bsp143I GATC 3 cut(s) 175, 295, 356
BspCNI CTCAG 1 cut(s) 718
BspDI ATCGAT 1 cut(s) 885
BspFNI CGCG 2 cut(s) 498, 784
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 2 cut(s) 170, 351
BspTNI GGTCTC 2 cut(s) 246, 722
BsrGI TGTACA 1 cut(s) 634
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 416, 702, 948
BssMI GATC 3 cut(s) 175, 295, 356
BssT1I CCWWGG 2 cut(s) 416, 702
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 604, 851
BstAUI TGTACA 1 cut(s) 634
BstDEI CTNAG 2 cut(s) 86, 726
BstF5I GGATG 3 cut(s) 565, 698, 766
BstFNI CGCG 2 cut(s) 498, 784
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 235, 784
BstKTI GATC 3 cut(s) 178, 298, 359
BstMAI GTCTC 4 cut(s) 246, 329, 494, 722
BstMBI GATC 3 cut(s) 175, 295, 356
BstMWI GCNNNNNNNGC 3 cut(s) 326, 704, 788
BstNI CCWGG 1 cut(s) 950
BstNSI RCATGY 3 cut(s) 923, 941, 959
BstSCI CCNGG 3 cut(s) 178, 619, 948
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 2 cut(s) 498, 784
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 885
BsuTUI ATCGAT 1 cut(s) 885
BtsCI GGATG 3 cut(s) 565, 698, 766
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 3 cut(s) 35, 360, 539
CciI TCATGA 1 cut(s) 580
CfoI GCGC 2 cut(s) 235, 784
Cfr13I GGNCC 3 cut(s) 50, 260, 831
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 635, 917, 935, 953
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 7 cut(s) 550, 581, 679, 835, 920, 938, 956
CviJI RGCY 4 cut(s) 34, 521, 749, 987
CviKI_1 RGCY 4 cut(s) 34, 521, 749, 987
CviQI GTAC 4 cut(s) 635, 917, 935, 953
DdeI CTNAG 2 cut(s) 86, 726
DpnI GATC 3 cut(s) 177, 297, 358
DpnII GATC 3 cut(s) 175, 295, 356
DraI TTTAAA 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 604, 851
EarI CTCTTC 2 cut(s) 604, 851
Eco130I CCWWGG 2 cut(s) 416, 702
Eco31I GGTCTC 2 cut(s) 246, 722
Eco47I GGWCC 3 cut(s) 50, 260, 831
Eco57I CTGAAG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 2 cut(s) 416, 702
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 2 cut(s) 416, 702
FaeI CATG 7 cut(s) 553, 584, 682, 838, 923, 941, 959
FaqI GGGAC 2 cut(s) 195, 603
FatI CATG 7 cut(s) 549, 580, 678, 834, 919, 937, 955
FblI GTMKAC 1 cut(s) 976
FokI GGATG 3 cut(s) 572, 685, 753
FspBI CTAG 3 cut(s) 401, 417, 518
GlaI GCGC 2 cut(s) 234, 783
HaeII RGCGCY 1 cut(s) 236
HapII CCGG 2 cut(s) 179, 621
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 235, 784
Hin1II CATG 7 cut(s) 553, 584, 682, 838, 923, 941, 959
Hin6I GCGC 2 cut(s) 233, 782
HinP1I GCGC 2 cut(s) 233, 782
HincII GTYRAC 1 cut(s) 977
HindII GTYRAC 1 cut(s) 977
HinfI GANTC 3 cut(s) 275, 421, 722
HpaII CCGG 2 cut(s) 179, 621
HphI GGTGA 2 cut(s) 170, 803
Hpy166II GTNNAC 2 cut(s) 145, 977
Hpy188I TCNGA 6 cut(s) 131, 274, 313, 356, 492, 727
Hpy188III TCNNGA 3 cut(s) 433, 581, 770
Hpy8I GTNNAC 2 cut(s) 145, 977
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 5 cut(s) 28, 212, 320, 698, 904
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 704, 788
HpyF3I CTNAG 2 cut(s) 86, 726
Hsp92II CATG 7 cut(s) 553, 584, 682, 838, 923, 941, 959
HspAI GCGC 2 cut(s) 233, 782
Kzo9I GATC 3 cut(s) 175, 295, 356
LweI GCATC 2 cut(s) 707, 775
MaeI CTAG 3 cut(s) 401, 417, 518
MaeIII GTNAC 1 cut(s) 38
MalI GATC 3 cut(s) 177, 297, 358
MboI GATC 3 cut(s) 175, 295, 356
MboII GAAGA 5 cut(s) 113, 591, 695, 836, 868
MflI RGATCY 1 cut(s) 175
MluCI AATT 7 cut(s) 22, 58, 104, 222, 305, 609, 674
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 7 cut(s) 255, 289, 407, 550, 819, 862, 990
Mph1103I ATGCAT 1 cut(s) 700
MseI TTAA 4 cut(s) 57, 533, 606, 762
MspI CCGG 2 cut(s) 179, 621
MspR9I CCNGG 3 cut(s) 180, 621, 950
Mva1269I GAATGC 2 cut(s) 411, 700
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 2 cut(s) 498, 784
MwoI GCNNNNNNNGC 3 cut(s) 326, 704, 788
NciI CCSGG 2 cut(s) 180, 621
NdeII GATC 3 cut(s) 175, 295, 356
NlaIII CATG 7 cut(s) 553, 584, 682, 838, 923, 941, 959
NlaIV GGNNCC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 3 cut(s) 923, 941, 959
PagI TCATGA 1 cut(s) 580
PctI GAATGC 2 cut(s) 411, 700
PfeI GAWTC 2 cut(s) 421, 722
PflFI GACNNNGTC 1 cut(s) 896
PfoI TCCNGGA 1 cut(s) 178
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 50
PsiI TTATAA 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 948
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 50, 260, 831
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 896
RsaI GTAC 4 cut(s) 636, 918, 936, 954
RsaNI GTAC 4 cut(s) 635, 917, 935, 953
SalI GTCGAC 1 cut(s) 975
SaqAI TTAA 4 cut(s) 57, 533, 606, 762
Sau3AI GATC 3 cut(s) 175, 295, 356
Sau96I GGNCC 3 cut(s) 50, 260, 831
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 180, 621, 950
SetI ASST 6 cut(s) 150, 523, 751, 811, 954, 982
SfaNI GCATC 2 cut(s) 707, 775
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 3 cut(s) 50, 260, 831
Sse9I AATT 7 cut(s) 22, 58, 104, 222, 305, 609, 674
SspMI CTAG 3 cut(s) 401, 417, 518
StyD4I CCNGG 3 cut(s) 178, 619, 948
StyI CCWWGG 2 cut(s) 416, 702
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 4 cut(s) 508, 885, 976, 989
TaqII GACCGA 1 cut(s) 746
TasI AATT 7 cut(s) 22, 58, 104, 222, 305, 609, 674
TatI WGTACW 3 cut(s) 634, 916, 934
TfiI GAWTC 2 cut(s) 421, 722
Tru1I TTAA 4 cut(s) 57, 533, 606, 762
Tru9I TTAA 4 cut(s) 57, 533, 606, 762
TscAI CASTG 3 cut(s) 35, 367, 546
TspRI CASTG 3 cut(s) 35, 367, 546
Tth111I GACNNNGTC 1 cut(s) 896
VpaK11BI GGWCC 3 cut(s) 50, 260, 831
XapI RAATTY 3 cut(s) 104, 609, 674
XceI RCATGY 3 cut(s) 923, 941, 959
XmaJI CCTAGG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 976
XspI CTAG 3 cut(s) 401, 417, 518
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.