RLG00000029878

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000268
Physical Location & Seq
Reverse (-)
50634188 .. 50638417
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029878

Sequence Viewer

Length: 960 bp
ATGTCTAACAAGCAGGTACCCAGTGATGTCCCTATGATGAGGTTAGCTTCTTTTCGTTATGTTTTTTTGGTTCGTCACCGTGCCTCCGGCGTCGGGACTCCGTGCGCGGCGCTCCTCCACTCCACTGCTCCTCCAGTGTTCAGCCCACGGGTTCTCCACGTAAGTTCTTGTTTTTTACTTATCCATCGCCGTCGGTCTCAGTTCGTCACCGTGCCTCCACTGTCGGGCCTCCGTGAGCGGCGCTCCTCCACTCCACTGCTCCTCCAGTCTTCCAGCCCACGGGTTCTCCACCCGTTTGGGTGTCTTCAACTCATTTTCCGATGGGACTTTCAGACAGTAGATGAGACTCTGTTGGCTCCAATGATTGAGGCTATGAAACCTGTAGCAAATATAAGTGTGGAAAGTCAGATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAAATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGTATTAGATATGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGCGAAAGCAATGGGTTTTGATGTTAGAAAGGATGACAAGAGAACAAGTACAAGGACTGGGAGAGTCACCATCCGCAAATGGTTAGATTCCGTAAATCGTCGTGTGCAACTTGCCCTTTGGATGTTGAAGCACCCAAAGAACCAAGCATGGGTGAAAATTAATGAGGCTTTAGATAATGAAAACAAAAATGATGGTGCCAAGAACAAGATCAAGACAATAGAAGAAATTGACGAAGCTACTGGAAATAGTGTTGATCAACATCATGGCAAGAGCTGTTCACAAGTCGTGCAGAGAAAAACCTCAACACTACAAGCAAGGGGTCGTGGTCGCCCTCGTGGTGCAAAGAATAAAAACTCTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

320

Amino Acids

36.03

Weight (kDa)

9.76

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 788
AccBSI CCGCTC 1 cut(s) 238
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 107, 238, 667
AcsI RAATTY 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 18, 643
AfiI CCNNNNNNNGG 4 cut(s) 93, 224, 279, 742
AgsI TTSAA 2 cut(s) 308, 721
AluBI AGCT 3 cut(s) 47, 830, 867
AluI AGCT 3 cut(s) 47, 830, 867
Alw26I GTCTC 3 cut(s) 201, 338, 569
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 1 cut(s) 447
AseI ATTAAT 1 cut(s) 753
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 3 cut(s) 107, 112, 243
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 4 cut(s) 68, 199, 652, 757
BanI GGYRCC 2 cut(s) 16, 788
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 3 cut(s) 261, 296, 540
BbvI GCAGC 1 cut(s) 581
BccI CCATC 4 cut(s) 192, 315, 671, 779
BceAI ACGGC 1 cut(s) 174
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 3 cut(s) 201, 338, 569
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 2 cut(s) 113, 244
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 3 cut(s) 108, 239, 570
BlsI GCNGC 3 cut(s) 109, 240, 571
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 4 cut(s) 18, 357, 528, 790
BmrI ACTGGG 2 cut(s) 15, 660
BmsI GCATC 2 cut(s) 412, 492
BmuI ACTGGG 2 cut(s) 15, 660
BpiI GAAGAC 3 cut(s) 261, 296, 540
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 3 cut(s) 117, 248, 513
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 146, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 224, 279, 742
Bse1I ACTGG 5 cut(s) 21, 134, 265, 655, 838
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 146, 278
BseGI GGATG 4 cut(s) 427, 631, 663, 720
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 4 cut(s) 93, 224, 279, 742
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 5 cut(s) 21, 134, 265, 655, 838
BseRI GAGGAG 4 cut(s) 104, 120, 235, 251
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 2 cut(s) 16, 788
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 3 cut(s) 14, 109, 338
BslI CCNNNNNNNGG 4 cut(s) 93, 224, 279, 742
BsmAI GTCTC 3 cut(s) 201, 338, 569
BsmFI GGGAC 3 cut(s) 14, 109, 338
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 801, 847
BspACI CCGC 3 cut(s) 107, 238, 667
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 4 cut(s) 18, 357, 528, 790
BspMI ACCTGC 1 cut(s) 4
BspT107I GGYRCC 2 cut(s) 16, 788
BspTNI GGTCTC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 5 cut(s) 21, 134, 265, 655, 838
BssECI CCNNGG 2 cut(s) 146, 278
BssMI GATC 2 cut(s) 801, 847
BssNI GRCGYC 1 cut(s) 90
BssSI CACGAG 1 cut(s) 927
Bst2BI CACGAG 1 cut(s) 927
Bst4CI ACNGT 5 cut(s) 80, 211, 222, 337, 562
BstACI GRCGYC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 2 cut(s) 146, 278
BstF5I GGATG 4 cut(s) 427, 631, 663, 720
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 2 cut(s) 113, 244
BstHHI GCGC 3 cut(s) 107, 112, 243
BstKTI GATC 2 cut(s) 804, 850
BstMAI GTCTC 3 cut(s) 201, 338, 569
BstMBI GATC 2 cut(s) 801, 847
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 3 cut(s) 261, 296, 540
BstXI CCANNNNNNTGG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 146, 278
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 427, 631, 663, 720
BtsI GCAGTG 2 cut(s) 123, 254
BtsIMutI CAGTG 5 cut(s) 28, 123, 141, 218, 254
BveI ACCTGC 1 cut(s) 4
CfoI GCGC 3 cut(s) 107, 112, 243
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 17, 642
CviAII CATG 2 cut(s) 741, 857
CviQI GTAC 2 cut(s) 17, 642
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 803, 849
DpnII GATC 2 cut(s) 801, 847
Eco31I GGTCTC 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 427
FaeI CATG 2 cut(s) 744, 860
FaqI GGGAC 3 cut(s) 14, 109, 338
FatI CATG 2 cut(s) 740, 856
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 3 cut(s) 108, 239, 570
FokI GGATG 4 cut(s) 434, 638, 650, 727
Fsp4HI GCNGC 3 cut(s) 108, 239, 570
GlaI GCGC 3 cut(s) 106, 111, 242
GluI GCNGC 3 cut(s) 108, 239, 570
GsuI CTGGAG 3 cut(s) 117, 248, 513
HaeII RGCGCY 2 cut(s) 113, 244
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 79
HhaI GCGC 3 cut(s) 107, 112, 243
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 744, 860
Hin6I GCGC 3 cut(s) 105, 110, 241
HinP1I GCGC 3 cut(s) 105, 110, 241
HinfI GANTC 5 cut(s) 97, 346, 470, 657, 680
HpaII CCGG 1 cut(s) 87
HphI GGTGA 4 cut(s) 68, 199, 652, 757
Hpy166II GTNNAC 1 cut(s) 872
Hpy188I TCNGA 6 cut(s) 320, 333, 408, 454, 475, 954
Hpy188III TCNNGA 4 cut(s) 94, 419, 530, 805
Hpy8I GTNNAC 1 cut(s) 872
Hpy99I CGWCG 3 cut(s) 95, 195, 696
HpyCH4III ACNGT 5 cut(s) 80, 211, 222, 337, 562
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 425, 466, 700, 883, 935
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 744, 860
HspAI GCGC 3 cut(s) 105, 110, 241
KpnI GGTACC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 2 cut(s) 801, 847
LmnI GCTCC 6 cut(s) 117, 133, 248, 264, 361, 532
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 2 cut(s) 412, 492
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 4 cut(s) 74, 205, 556, 658
MalI GATC 2 cut(s) 803, 849
MbiI CCGCTC 1 cut(s) 238
MboI GATC 2 cut(s) 801, 847
MboII GAAGA 4 cut(s) 261, 296, 545, 827
MluCI AATT 4 cut(s) 447, 460, 750, 819
MlyI GAGTC 4 cut(s) 91, 340, 479, 666
MmeI TCCRAC 1 cut(s) 474
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 1 cut(s) 753
MspI CCGG 1 cut(s) 87
MteI GCGCNGCGC 1 cut(s) 108
MvnI CGCG 1 cut(s) 107
NdeII GATC 2 cut(s) 801, 847
NlaIII CATG 2 cut(s) 744, 860
NlaIV GGNNCC 4 cut(s) 18, 357, 528, 790
NmuCI GTSAC 3 cut(s) 74, 205, 658
NsiI ATGCAT 1 cut(s) 427
PfeI GAWTC 1 cut(s) 680
PkrI GCNGC 3 cut(s) 109, 240, 571
PleI GAGTC 4 cut(s) 91, 340, 478, 665
PpsI GAGTC 4 cut(s) 91, 340, 478, 665
Ppu21I YACGTR 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 753
PspN4I GGNNCC 4 cut(s) 18, 357, 528, 790
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 2 cut(s) 18, 643
RsaNI GTAC 2 cut(s) 17, 642
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 3 cut(s) 108, 239, 570
Sau3AI GATC 2 cut(s) 801, 847
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 4 cut(s) 91, 340, 479, 666
SfaNI GCATC 2 cut(s) 412, 492
SfcI CTRYAG 1 cut(s) 381
Sse9I AATT 4 cut(s) 447, 460, 750, 819
SsiI CCGC 3 cut(s) 107, 238, 667
TaaI ACNGT 5 cut(s) 80, 211, 222, 337, 562
TaiI ACGT 1 cut(s) 162
TaqII GACCGA 1 cut(s) 183
TasI AATT 4 cut(s) 447, 460, 750, 819
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 110, 241
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 5 cut(s) 28, 130, 141, 225, 261
TseFI GTSAC 3 cut(s) 74, 205, 658
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 3 cut(s) 74, 205, 658
TspDTI ATGAA 3 cut(s) 389, 447, 786
TspGWI ACGGA 3 cut(s) 90, 221, 673
TspRI CASTG 5 cut(s) 28, 130, 141, 225, 261
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.