Rh7AG211600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000268
Physical Location & Seq
Reverse (-)
19483515 .. 19495164
11650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG211600.1

Sequence Viewer

Length: 435 bp
ATGAAATGCCTAGAGCTAGGGCGACTTGTTACCTCCGAGATTATAAATGCAGCAGTTAGTCTTCTCAGGGATCCAGAGTCTTCTACTTGGATAGAGCAATTAAGGCTGCCAAGAAAGGAGAATGGAGAAAAGATATTTATCCCCATCCTGGATCCAGATACTACCCCAAACCACTGGTTCTTCATTGTGATTAAATTAGCGAGAACGGATGTAGAGATATGGGACACTTACCCGAATCCTGCACGCACTATGGCTCAAAATGATCTTGTTTATTATGTGATTAATTCTATTCGGCTTTCTGCTCCGGTGTCCGAAAGGGAAGGATTTGAAGAGCTATTAGCTTCACCCACGGATCGTTTTCTCATTCCTCATCTGGTGTTCCGAAGGAAGGATCAAGGATTTGAAGAGCTAACTAGCTTCATTCATACCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.71

Weight (kDa)

5.21

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AclWI GGATC 6 cut(s) 65, 78, 146, 159, 360, 399
AfiI CCNNNNNNNGG 2 cut(s) 148, 388
AgsI TTSAA 2 cut(s) 329, 404
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 5 cut(s) 16, 334, 341, 409, 417
AluI AGCT 5 cut(s) 16, 334, 341, 409, 417
AlwI GGATC 6 cut(s) 65, 78, 146, 159, 360, 399
ApeKI GCWGC 2 cut(s) 50, 106
AseI ATTAAT 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 336
BamHI GGATCC 2 cut(s) 70, 151
BbsI GAAGAC 2 cut(s) 53, 72
BbvI GCAGC 2 cut(s) 62, 93
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 149
BfaI CTAG 3 cut(s) 11, 17, 414
BisI GCNGC 2 cut(s) 51, 107
BlsI GCNGC 2 cut(s) 52, 108
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 72, 153
BmrFI CCNGG 1 cut(s) 149
BpiI GAAGAC 2 cut(s) 53, 72
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 388
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 144, 214
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 148, 388
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 62, 93
BsgI GTGCAG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 148, 388
BsmFI GGGAC 1 cut(s) 236
Bsp143I GATC 5 cut(s) 70, 151, 262, 352, 391
BspCNI CTCAG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 72, 153
BspPI GGATC 6 cut(s) 65, 78, 146, 159, 360, 399
BspQI GCTCTTC 2 cut(s) 324, 399
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 5 cut(s) 70, 151, 262, 352, 391
Bst2UI CCWGG 1 cut(s) 149
Bst6I CTCTTC 2 cut(s) 324, 399
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 144, 214
BstKTI GATC 5 cut(s) 73, 154, 265, 355, 394
BstMBI GATC 5 cut(s) 70, 151, 262, 352, 391
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 62, 93
BstV2I GAAGAC 2 cut(s) 53, 72
BstX2I RGATCY 2 cut(s) 70, 151
BstXI CCANNNNNNTGG 1 cut(s) 174
BstYI RGATCY 2 cut(s) 70, 151
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 144, 214
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 244
CviJI RGCY 8 cut(s) 16, 106, 254, 295, 334, 341, 409, 417
CviKI_1 RGCY 8 cut(s) 16, 106, 254, 295, 334, 341, 409, 417
DdeI CTNAG 1 cut(s) 65
DpnI GATC 5 cut(s) 72, 153, 264, 354, 393
DpnII GATC 5 cut(s) 70, 151, 262, 352, 391
Eam1104I CTCTTC 2 cut(s) 324, 399
EarI CTCTTC 2 cut(s) 324, 399
EcoRII CCWGG 1 cut(s) 147
FaiI YATR 6 cut(s) 44, 220, 251, 276, 426, 433
FaqI GGGAC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 51, 107
FokI GGATG 2 cut(s) 131, 221
Fsp4HI GCNGC 2 cut(s) 51, 107
FspBI CTAG 3 cut(s) 11, 17, 414
GluI GCNGC 2 cut(s) 51, 107
HapII CCGG 1 cut(s) 305
HinfI GANTC 2 cut(s) 77, 235
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 37, 313, 383
Hpy188III TCNNGA 2 cut(s) 74, 155
HpyAV CCTTC 3 cut(s) 314, 378, 382
HpyCH4V TGCA 2 cut(s) 50, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 65
Kzo9I GATC 5 cut(s) 70, 151, 262, 352, 391
LguI GCTCTTC 2 cut(s) 324, 399
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 9 cut(s) 52, 87, 134, 160, 161, 168, 252, 318, 359
Lsp1109I GCAGC 2 cut(s) 62, 93
MaeI CTAG 3 cut(s) 11, 17, 414
MaeIII GTNAC 1 cut(s) 28
MalI GATC 5 cut(s) 72, 153, 264, 354, 393
MboI GATC 5 cut(s) 70, 151, 262, 352, 391
MboII GAAGA 5 cut(s) 53, 72, 172, 341, 416
MflI RGATCY 2 cut(s) 70, 151
MluCI AATT 3 cut(s) 98, 194, 283
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 2 cut(s) 43, 378
MseI TTAA 3 cut(s) 101, 192, 282
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 5 cut(s) 70, 151, 262, 352, 391
NlaIV GGNNCC 2 cut(s) 72, 153
PciSI GCTCTTC 2 cut(s) 324, 399
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 52, 108
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 282
PsiI TTATAA 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 72, 153
PsuI RGATCY 2 cut(s) 70, 151
SapI GCTCTTC 2 cut(s) 324, 399
SaqAI TTAA 3 cut(s) 101, 192, 282
SatI GCNGC 2 cut(s) 51, 107
Sau3AI GATC 5 cut(s) 70, 151, 262, 352, 391
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 149
SetI ASST 6 cut(s) 18, 35, 336, 343, 411, 419
Sse9I AATT 3 cut(s) 98, 194, 283
SspMI CTAG 3 cut(s) 11, 17, 414
StyD4I CCNGG 1 cut(s) 147
TasI AATT 3 cut(s) 98, 194, 283
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 3 cut(s) 101, 192, 282
Tru9I TTAA 3 cut(s) 101, 192, 282
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 50, 106
TspDTI ATGAA 4 cut(s) 17, 172, 409, 413
TspGWI ACGGA 2 cut(s) 221, 365
TspRI CASTG 1 cut(s) 179
VspI ATTAAT 1 cut(s) 282
XspI CTAG 3 cut(s) 11, 17, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.