Rh6BG147600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000268
Physical Location & Seq
Forward (+)
23726331 .. 23729722
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG147600.1

Sequence Viewer

Length: 1236 bp
ATGAAGGAGAAAAACATTAAGGTGGATGTTATGGTTAGGAGACAGCTGGCTAATACATGGAGGTCTATGAAACCTGAAGAGAAGGCAAAGTATGCTGGGTCATATCCATGTGTTAAAGTTGGTTGTAGGGAATTCAGACATGATTTTTGTGGATTGAAACCTATAATCACCCAATGTCGTCCAGATGTTTTTAAAGATGTCATTTCAACATTTTCTGATGAAAGAAAAGCTGCAGTAGAAGAAATGGGTTTTGGGTTACTATTGCAGCTTCGCTGTGACCAATTGCAGTGCACCTTGTGTGGTTGGTTGGTTGATAGATTTGATCCTGATGCATCTTCAATTGAGGTACATGGTAAGACATTCAAGCTTAAACCATCTGACTTTGAGAATATAATGGGGGTCAAAGATGGAGGACATGATGTTGAGCTAAGTGACTCAGAGGATAACAACATACACGGACTAAAGATTATCCGTTGTGGAAAAGATAGAAATCAAATAAGTATGAGAGAAATAGCTAAGAGGTTGAGACAGACAAATATTGTCGATGACACCTTTAGAGTTGGGTTCGTGTTATTTTTGCTGGGCACCTTGCTCTGTCCTTCTTCAATTATATTGGCTTCAAAGTACCTGCAACCATTAAGGGAAACCAGTGATATAAAACTCAAAAATTGGGCGACATTCTCATTCAAATATCTAGTTGAAGGTGTTAGTTCCTTTAAGAATAGAAAACGATCCTGTGTGATCAATGGATGTGTACTATTCTTGCAGCTCTTTTATTTTGATCTCATTGTTCATGGAAGAACATTTGTAAATAGGTCGTTAGCACCCATTGTTGCATGGGGAGATAAGGAGGCAAATGAATTAATTAAGTGGATCAGGACTCACAAAGGGGGTTTTGAAAGTGTGGACATTACTGTTGTTTCTGACCGTACAGCCTTGATCAGCAAGGAAGATGAGGTGGCCCTGAAGAATGGTCTTGGGAGTGTACACATAAAGGTTACTGCAAATGAACGGATGCAGCGAAAGACAAATGATGAAATGAAAGTGGCTGAATTGGAAGCTAAACTTGACAGTGAGATGGGCAAAATTGAAGGCCTTACTTACTGGCAAGTCTTTCAAGCTGCTAACATTTTGGCTACCAGATTTGACCTGCTGAGTGCGTTTCTTCCCATGTCCCGGGAAAGGAAGAAGGATTATGTTTTATATCTCTTAGAGCATGGCACCCATGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

411

Amino Acids

46.92

Weight (kDa)

8.82

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000268)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23642 FvH4_2g09911 FvH4_2g09911 FvH4_2g09911 FvH4_3g18421 FvH4_4g05321 FvH4_6g28332 FvH4_7g31231
prunus_persica Prupe.2G063700_v2.0.a1 Prupe.5G238300_v2.0.a1 Prupe.6G153700_v2.0.a1 Prupe.7G017400_v2.0.a1 Prupe.7G070100_v2.0.a1 Prupe.7G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0345471 RchiOBHm_Chr1g0366901 RchiOBHm_Chr2g0162601 RchiOBHm_Chr6g0266661 RchiOBHm_Chr6g0266671
rosa_laevigata RLG00000005047 RLG00000007971 RLG00000008530 RLG00000009009 RLG00000009046 RLG00000014086 RLG00000017162 RLG00000017163 RLG00000017440 RLG00000019098 RLG00000022623 RLG00000024566 RLG00000027733 RLG00000029878 RLG00000029945 RLG00000030127 RLG00000030157 RLG00000031078 RLG00000031080 RLG00000034338 RLG00000034670
rosa_multiflora Rmu_sc0002106.1_g000007 Rmu_sc0002531.1_g000064 Rmu_sc0003433.1_g000005 Rmu_sc0004704.1_g000001 Rmu_sc0004704.1_g000002 Rmu_sc0004888.1_g000042 Rmu_sc0005599.1_g000031 Rmu_sc0006413.1_g000014 Rmu_sc0006413.1_g000018
rosa_roxburghii Rroxscaffold_1G00031940 Rroxscaffold_1G00032500 Rroxscaffold_1G00074770 Rroxscaffold_1G00074780 Rroxscaffold_1G00075150 Rroxscaffold_2G00125060 Rroxscaffold_2G00125070 Rroxscaffold_2G00125800 Rroxscaffold_2G00125820 Rroxscaffold_2G00139560 Rroxscaffold_2G00140550 Rroxscaffold_4G00314090 Rroxscaffold_6G00390050 Rroxscaffold_6G00390520 Rroxscaffold_6G00390530 Rroxscaffold_6G00428030 Rroxscaffold_7G00201570 Rroxscaffold_7G00201580 Rroxscaffold_7G00207070 Rroxscaffold_7G00207080 Rroxscaffold_7G00207240
rosa_rugosa Rorug01G0408000 Rorug01G0408100 Rorug01G0408100 Rorug01G0408200 Rorug02G0155200 Rorug02G0181500 Rorug02G0288400 Rorug03G0208600 Rorug03G0272300 Rorug06G0005500 Rorug06G0005600 Rorug06G0026300.1 Rorug06G0026400 Rorug06G0026500 Rorug06G0026600 Rorug06G0026600 Rorug06G0026600 Rorug06G0145800 Rorug07G0305200
rosa_samantha Rh1AG062100 Rh1BG131900 Rh1BG157000 Rh1CG021100 Rh1CG321600 Rh1DG188200 Rh2DG388300 Rh3AG320500 Rh3BG355400 Rh3CG352400 Rh3CG353200 Rh4AG045800 Rh4DG171700 Rh5AG196000 Rh5AG196100 Rh5CG346800 Rh6BG147600 Rh6BG147700 Rh6CG143200 Rh6CG143500 Rh6CG174600 Rh6CG391800 Rh6DG132100 Rh6DG132300 Rh6DG167100 Rh6DG167200 Rh7AG211600 Rh7BG307000 Rh7BG307300 Rh7BG398300
rosa_wichuraiana Rw0G001830 Rw0G001840 Rw0G018160 Rw0G018170 Rw3G028040 Rw5G017860 Rw5G026710 Rw6G012630 Rw6G012650 Rw6G012780 Rw6G012800 Rw7G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 636, 1158
AccB1I GGYRCC 2 cut(s) 584, 1220
AclWI GGATC 3 cut(s) 317, 726, 881
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 2 cut(s) 96, 986
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 5 cut(s) 348, 626, 756, 931, 987
AfiI CCNNNNNNNGG 2 cut(s) 1176, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 9 cut(s) 46, 230, 268, 367, 427, 515, 769, 1061, 1121
AluI AGCT 9 cut(s) 46, 230, 268, 367, 427, 515, 769, 1061, 1121
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 34, 520
Alw44I GTGCAC 1 cut(s) 289
AlwI GGATC 3 cut(s) 317, 726, 881
Ama87I CYCGRG 1 cut(s) 1176
AoxI GGCC 2 cut(s) 960, 1093
ApaLI GTGCAC 1 cut(s) 289
ApeKI GCWGC 5 cut(s) 230, 265, 766, 1018, 1121
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AseI ATTAAT 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 961
AsuC2I CCSGG 2 cut(s) 1177, 1178
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 1176
BaeGI GKGCMC 2 cut(s) 293, 587
BanI GGYRCC 2 cut(s) 584, 1220
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 5 cut(s) 217, 277, 778, 1030, 1108
BccI CCATC 3 cut(s) 382, 401, 1072
BclI TGATCA 2 cut(s) 741, 939
BcnI CCSGG 2 cut(s) 1177, 1178
BcoDI GTCTC 2 cut(s) 34, 520
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 2 cut(s) 636, 1158
BisI GCNGC 5 cut(s) 231, 266, 767, 1019, 1122
BlsI GCNGC 5 cut(s) 232, 267, 768, 1020, 1123
Bme1390I CCNGG 2 cut(s) 1177, 1178
BmeT110I CYCGRG 1 cut(s) 1176
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 2 cut(s) 586, 1222
BmrFI CCNGG 2 cut(s) 1177, 1178
BmsI GCATC 3 cut(s) 319, 341, 1005
BpuMI CCSGG 2 cut(s) 1177, 1178
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 1176, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 1176, 1182
Bse1I ACTGG 2 cut(s) 648, 1109
Bse8I GATNNNNATC 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 1176, 1225
BseGI GGATG 3 cut(s) 31, 755, 1020
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 1176, 1182
BseMII CTCAG 2 cut(s) 450, 1145
BseNI ACTGG 2 cut(s) 648, 1109
BseSI GKGCMC 2 cut(s) 293, 587
BseXI GCAGC 5 cut(s) 217, 277, 778, 1030, 1108
BseYI CCCAGC 2 cut(s) 95, 580
BshFI GGCC 2 cut(s) 962, 1095
BshNI GGYRCC 2 cut(s) 584, 1220
BsiHKAI GWGCWC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 1176
BsiSI CCGG 1 cut(s) 1177
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 2 cut(s) 1176, 1182
BsmAI GTCTC 2 cut(s) 34, 520
BsmFI GGGAC 1 cut(s) 1159
BsnI GGCC 2 cut(s) 962, 1095
BsoBI CYCGRG 1 cut(s) 1176
Bsp1286I GDGCHC 2 cut(s) 293, 587
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 6 cut(s) 322, 731, 741, 781, 873, 939
Bsp19I CCATGG 1 cut(s) 1225
BspANI GGCC 2 cut(s) 962, 1095
BspCNI CTCAG 2 cut(s) 449, 1146
BspLI GGNNCC 2 cut(s) 586, 1222
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 2 cut(s) 636, 1158
BspPI GGATC 3 cut(s) 317, 726, 881
BspT107I GGYRCC 2 cut(s) 584, 1220
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 2 cut(s) 648, 1109
BssECI CCNNGG 2 cut(s) 1176, 1225
BssMI GATC 6 cut(s) 322, 731, 741, 781, 873, 939
BssT1I CCWWGG 1 cut(s) 1225
Bst4CI ACNGT 3 cut(s) 916, 929, 1073
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 985
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 5 cut(s) 428, 436, 516, 1154, 1210
BstDSI CCRYGG 1 cut(s) 1225
BstF5I GGATG 3 cut(s) 31, 755, 1020
BstKTI GATC 6 cut(s) 325, 734, 744, 784, 876, 942
BstMAI GTCTC 2 cut(s) 34, 520
BstMBI GATC 6 cut(s) 322, 731, 741, 781, 873, 939
BstMWI GCNNNNNNNGC 2 cut(s) 92, 1227
BstSCI CCNGG 2 cut(s) 1175, 1176
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 2 cut(s) 293, 587
BstV1I GCAGC 5 cut(s) 217, 277, 778, 1030, 1108
BsuRI GGCC 2 cut(s) 962, 1095
BtgI CCRYGG 1 cut(s) 1225
BtsCI GGATG 3 cut(s) 31, 755, 1020
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 3 cut(s) 293, 655, 1078
BveI ACCTGC 2 cut(s) 636, 1158
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 961
Cfr9I CCCGGG 1 cut(s) 1176
Csp6I GTAC 5 cut(s) 347, 625, 755, 930, 986
CviQI GTAC 5 cut(s) 347, 625, 755, 930, 986
DdeI CTNAG 5 cut(s) 428, 436, 516, 1154, 1210
DpnI GATC 6 cut(s) 324, 733, 743, 783, 875, 941
DpnII GATC 6 cut(s) 322, 731, 741, 781, 873, 939
DraI TTTAAA 1 cut(s) 193
DraIII CACNNNGTG 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 1225
Eco147I AGGCCT 1 cut(s) 1095
Eco57I CTGAAG 2 cut(s) 96, 986
Eco88I CYCGRG 1 cut(s) 1176
EcoRI GAATTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 1225
EcoT22I ATGCAT 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 1225
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 1 cut(s) 1159
FbaI TGATCA 2 cut(s) 741, 939
Fnu4HI GCNGC 5 cut(s) 231, 266, 767, 1019, 1122
FokI GGATG 3 cut(s) 38, 762, 1027
Fsp4HI GCNGC 5 cut(s) 231, 266, 767, 1019, 1122
FspBI CTAG 1 cut(s) 695
GluI GCNGC 5 cut(s) 231, 266, 767, 1019, 1122
GsaI CCCAGC 2 cut(s) 99, 584
HaeIII GGCC 2 cut(s) 962, 1095
HapII CCGG 1 cut(s) 1177
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 434, 880
HpaII CCGG 1 cut(s) 1177
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 5 cut(s) 291, 755, 907, 986, 988
Hpy188I TCNGA 5 cut(s) 137, 217, 379, 439, 925
Hpy188III TCNNGA 3 cut(s) 182, 326, 877
Hpy8I GTNNAC 5 cut(s) 291, 755, 907, 986, 988
HpyAV CCTTC 5 cut(s) 76, 609, 695, 1085, 1183
HpyCH4III ACNGT 3 cut(s) 916, 929, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 1227
HpyF3I CTNAG 5 cut(s) 428, 436, 516, 1154, 1210
Ksp22I TGATCA 2 cut(s) 741, 939
Kzo9I GATC 6 cut(s) 322, 731, 741, 781, 873, 939
Lsp1109I GCAGC 5 cut(s) 217, 277, 778, 1030, 1108
LweI GCATC 3 cut(s) 319, 341, 1005
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 4 cut(s) 255, 275, 431, 997
MalI GATC 6 cut(s) 324, 733, 743, 783, 875, 941
MboI GATC 6 cut(s) 322, 731, 741, 781, 873, 939
MboII GAAGA 9 cut(s) 89, 251, 327, 594, 810, 962, 979, 1157, 1198
MfeI CAATTG 2 cut(s) 281, 339
MhlI GDGCHC 2 cut(s) 293, 587
MluCI AATT 9 cut(s) 131, 281, 339, 606, 667, 860, 864, 1052, 1086
MlyI GAGTC 2 cut(s) 428, 874
MnlI CCTC 7 cut(s) 54, 337, 404, 433, 513, 844, 949
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 8 cut(s) 18, 114, 192, 369, 638, 717, 863, 867
MslI CAYNNNNRTG 2 cut(s) 20, 106
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 1177
MspR9I CCNGG 2 cut(s) 1177, 1178
MunI CAATTG 2 cut(s) 281, 339
MwoI GCNNNNNNNGC 2 cut(s) 92, 1227
NciI CCSGG 2 cut(s) 1177, 1178
NcoI CCATGG 1 cut(s) 1225
NdeII GATC 6 cut(s) 322, 731, 741, 781, 873, 939
NlaIV GGNNCC 2 cut(s) 586, 1222
NmuCI GTSAC 2 cut(s) 275, 431
NsiI ATGCAT 1 cut(s) 334
PacI TTAATTAA 1 cut(s) 867
PceI AGGCCT 1 cut(s) 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 1018
PkrI GCNGC 5 cut(s) 232, 267, 768, 1020, 1123
PleI GAGTC 2 cut(s) 428, 874
PpsI GAGTC 2 cut(s) 428, 874
PshBI ATTAAT 1 cut(s) 863
PspFI CCCAGC 2 cut(s) 95, 580
PspN4I GGNNCC 2 cut(s) 586, 1222
PspPI GGNCC 1 cut(s) 961
PstI CTGCAG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 5 cut(s) 348, 626, 756, 931, 987
RsaNI GTAC 5 cut(s) 347, 625, 755, 930, 986
RseI CAYNNNNRTG 2 cut(s) 20, 106
SaqAI TTAA 8 cut(s) 18, 114, 192, 369, 638, 717, 863, 867
SatI GCNGC 5 cut(s) 231, 266, 767, 1019, 1122
Sau3AI GATC 6 cut(s) 322, 731, 741, 781, 873, 939
Sau96I GGNCC 1 cut(s) 961
SchI GAGTC 2 cut(s) 428, 874
ScrFI CCNGG 2 cut(s) 1177, 1178
SduI GDGCHC 2 cut(s) 293, 587
SfaNI GCATC 3 cut(s) 319, 341, 1005
SfcI CTRYAG 1 cut(s) 231
SmaI CCCGGG 1 cut(s) 1178
SmiMI CAYNNNNRTG 2 cut(s) 20, 106
Sse9I AATT 9 cut(s) 131, 281, 339, 606, 667, 860, 864, 1052, 1086
SseBI AGGCCT 1 cut(s) 1095
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 695
StuI AGGCCT 1 cut(s) 1095
StyD4I CCNGG 2 cut(s) 1175, 1176
StyI CCWWGG 1 cut(s) 1225
TaaI ACNGT 3 cut(s) 916, 929, 1073
TaqI TCGA 1 cut(s) 543
TasI AATT 9 cut(s) 131, 281, 339, 606, 667, 860, 864, 1052, 1086
TatI WGTACW 2 cut(s) 754, 985
Tru1I TTAA 8 cut(s) 18, 114, 192, 369, 638, 717, 863, 867
Tru9I TTAA 8 cut(s) 18, 114, 192, 369, 638, 717, 863, 867
TscAI CASTG 3 cut(s) 293, 655, 1078
TseFI GTSAC 2 cut(s) 275, 431
TseI GCWGC 5 cut(s) 230, 265, 766, 1018, 1121
Tsp45I GTSAC 2 cut(s) 275, 431
TspDTI ATGAA 8 cut(s) 17, 83, 234, 782, 873, 1023, 1050, 1055
TspGWI ACGGA 3 cut(s) 461, 471, 1027
TspMI CCCGGG 1 cut(s) 1176
TspRI CASTG 3 cut(s) 293, 655, 1078
VneI GTGCAC 1 cut(s) 289
VspI ATTAAT 1 cut(s) 863
XapI RAATTY 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 1176
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.