Rh2CG208000
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015240
Physical Location & Seq
Forward (+)
20291448 .. 20294368
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG208000.1

Sequence Viewer

Length: 627 bp
ATGTTGTCTACTATTCCCGCCATGCTTCCTTCAGAAACCCTTCTTCATTTTCCGGCTTTCGATCCCGGGTTCAACCCCGGGGGCTTTACCCCGTGGGAGTCGGAACTTTGTCCGGCTATCAAGTATTCCCCCAAACCCGTAATCTCCAACCCCAGTTCAGATGCTGACCAAACCCCATCCCCCAATCCGGTCATTTCCAGCTCCGGTTCGGATGACGACCCAAACCGGCCGGGCCGGTCCGGCCCAGACCATGCGAAGTCATGCCCGATTAACGGCTCGAAGCGTACGGTGTCGGTTTCGCCGGTGGACGAGCGGAAGCGGAGGCGGATGATATCGAACCGGGAGTCGGCGAGGCGGTCGAGGATGCGAAAACAAAAGCACATAGAAAACCTAAGGACACAGGTCAACAGGCTTAGAATTGAGAACCGGGAACTGAACAACCGGCTCCGGTTTGTCATTTACCATTTTCAGAGGGTACATACGGACAACGATATGCTCCGAGCCGAGCACACGATGCTCCAACAGAAGTTATCGGACATACGCCAAATTTTGGTTTTCCGGCAACTCCAGCACATGTCATCTGCATGGCCATGCGATACCGTTATTACAGAACAAACGCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

208

Amino Acids

23.85

Weight (kDa)

9.86

Isoelectric Point (pI)

71.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 103 - 149 1.8e-06 Basic region leucine zipper
bZIP_1 PF00170 105 - 149 5.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49760
malus_domestica MD02G1189300.v1.1 MD15G1300200.v1.1
prunus_persica Prupe.6G217300_v2.0.a1
pyrus_communis pycom02g15350 pycom15g26280
rosa_chinensis RchiOBHm_Chr2g0108691
rosa_laevigata RLG00000017685
rosa_multiflora Rmu_co8051662.1_g000001
rosa_roxburghii Rroxscaffold_2G00134910
rosa_rugosa Rorug02G0155200
rosa_samantha Rh2AG204900 Rh2BG216800 Rh2CG208000 Rh2DG211200
rosa_wichuraiana Rw2G016320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 8
AciI CCGC 5 cut(s) 18, 313, 319, 325, 355
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 2 cut(s) 227, 587
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 2 cut(s) 286, 477
AfiI CCNNNNNNNGG 4 cut(s) 187, 272, 346, 550
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 510
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 2 cut(s) 65, 77
AoxI GGCC 4 cut(s) 227, 232, 241, 587
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 232, 237, 242
AsuC2I CCSGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
AvaI CYCGRG 2 cut(s) 65, 77
AvaII GGWCC 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 392
BalI TGGCCA 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 510
BccI CCATC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 289
BcnI CCSGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
BglI GCCNNNNNGGC 1 cut(s) 240
Bme1390I CCNGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 2 cut(s) 65, 77
BmgT120I GGNCC 3 cut(s) 232, 237, 242
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 3 cut(s) 151, 354, 504
BmuI ACTGGG 1 cut(s) 147
BoxI GACNNNNGTC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 551
BpuMI CCSGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
BsaJI CCNNGG 5 cut(s) 65, 76, 77, 78, 92
BsaWI WCCGGW 3 cut(s) 187, 203, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 272, 346, 550
Bse118I RCCGGY 4 cut(s) 225, 234, 301, 441
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 392
BseDI CCNNGG 5 cut(s) 65, 76, 77, 78, 92
BseGI GGATG 4 cut(s) 176, 217, 333, 369
BseLI CCNNNNNNNGG 4 cut(s) 187, 272, 346, 550
BseNI ACTGG 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 227
Bsh1285I CGRYCG 2 cut(s) 230, 359
BshFI GGCC 4 cut(s) 229, 234, 243, 589
BsiEI CGRYCG 2 cut(s) 230, 359
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 2 cut(s) 65, 77
BsiWI CGTACG 1 cut(s) 284
BslI CCNNNNNNNGG 4 cut(s) 187, 272, 346, 550
BsnI GGCC 4 cut(s) 229, 234, 243, 589
BsoBI CYCGRG 2 cut(s) 65, 77
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 5 cut(s) 18, 313, 319, 325, 355
BspANI GGCC 4 cut(s) 229, 234, 243, 589
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 313
BsrFI RCCGGY 4 cut(s) 225, 234, 301, 441
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 4 cut(s) 225, 234, 301, 441
BssECI CCNNGG 5 cut(s) 65, 76, 77, 78, 92
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 289, 601
BstAPI GCANNNNNTGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 392, 413
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 4 cut(s) 176, 217, 333, 369
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 2 cut(s) 230, 359
BstMWI GCNNNNNNNGC 3 cut(s) 240, 514, 568
BstNSI RCATGY 1 cut(s) 577
BstPAI GACNNNNGTC 1 cut(s) 401
BstSCI CCNGG 7 cut(s) 64, 65, 76, 77, 229, 339, 426
BstZI CGGCCG 1 cut(s) 227
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 4 cut(s) 229, 234, 243, 589
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 4 cut(s) 176, 217, 333, 369
CaiI CAGNNNCTG 1 cut(s) 164
Cfr10I RCCGGY 4 cut(s) 225, 234, 301, 441
Cfr13I GGNCC 3 cut(s) 232, 237, 242
Cfr9I CCCGGG 2 cut(s) 65, 77
CpoI CGGWCCG 1 cut(s) 237
Csp6I GTAC 2 cut(s) 285, 476
CspI CGGWCCG 1 cut(s) 237
CviAII CATG 6 cut(s) 22, 251, 261, 574, 585, 591
CviQI GTAC 2 cut(s) 285, 476
DdeI CTNAG 2 cut(s) 392, 413
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 2 cut(s) 227, 587
EagI CGGCCG 1 cut(s) 227
EciI GGCGGA 1 cut(s) 340
EclXI CGGCCG 1 cut(s) 227
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 15
Eco81I CCTNAGG 1 cut(s) 392
Eco88I CYCGRG 2 cut(s) 65, 77
EcoRV GATATC 1 cut(s) 333
FaeI CATG 6 cut(s) 25, 254, 264, 577, 588, 594
FatI CATG 6 cut(s) 21, 250, 260, 573, 584, 590
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 8
FokI GGATG 4 cut(s) 163, 224, 340, 376
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 4 cut(s) 229, 234, 243, 589
Hin1II CATG 6 cut(s) 25, 254, 264, 577, 588, 594
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 98, 344
Hpy166II GTNNAC 3 cut(s) 9, 307, 406
Hpy188I TCNGA 7 cut(s) 34, 103, 160, 211, 471, 500, 535
Hpy8I GTNNAC 3 cut(s) 9, 307, 406
HpyAV CCTTC 2 cut(s) 39, 50
HpyCH4III ACNGT 2 cut(s) 289, 601
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 514, 568
HpyF3I CTNAG 2 cut(s) 392, 413
Hsp92II CATG 6 cut(s) 25, 254, 264, 577, 588, 594
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 4 cut(s) 206, 450, 501, 522
LweI GCATC 3 cut(s) 151, 354, 504
MalI GATC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 313
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 589
MluCI AATT 2 cut(s) 417, 546
MluNI TGGCCA 1 cut(s) 589
MlyI GAGTC 2 cut(s) 107, 353
MmeI TCCRAC 3 cut(s) 81, 171, 544
MnlI CCTC 4 cut(s) 315, 345, 354, 465
Mox20I TGGCCA 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 589
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 583, 589
Msp20I TGGCCA 1 cut(s) 589
MspR9I CCNGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
MwoI GCNNNNNNNGC 3 cut(s) 240, 514, 568
NciI CCSGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
NdeII GATC 1 cut(s) 61
NlaIII CATG 6 cut(s) 25, 254, 264, 577, 588, 594
NlaIV GGNNCC 1 cut(s) 446
NmeAIII GCCGAG 1 cut(s) 529
NspI RCATGY 1 cut(s) 577
PciI ACATGT 1 cut(s) 573
PdmI GAANNNNTTC 1 cut(s) 39
Pfl23II CGTACG 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 550
PleI GAGTC 2 cut(s) 106, 352
PpsI GAGTC 2 cut(s) 106, 352
PscI ACATGT 1 cut(s) 573
PshAI GACNNNNGTC 1 cut(s) 401
PspLI CGTACG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 3 cut(s) 232, 237, 242
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 286, 477
RsaNI GTAC 2 cut(s) 285, 476
RseI CAYNNNNRTG 2 cut(s) 583, 589
Rsr2I CGGWCCG 1 cut(s) 237
RsrII CGGWCCG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 3 cut(s) 232, 237, 242
SchI GAGTC 2 cut(s) 107, 353
ScrFI CCNGG 7 cut(s) 66, 67, 78, 79, 231, 341, 428
SduI GDGCHC 1 cut(s) 510
SetI ASST 3 cut(s) 203, 393, 405
SfaNI GCATC 3 cut(s) 151, 354, 504
SfiI GGCCNNNNNGGCC 1 cut(s) 240
SgrAI CRCCGGYG 1 cut(s) 301
SinI GGWCC 1 cut(s) 237
SmaI CCCGGG 2 cut(s) 67, 79
SmiMI CAYNNNNRTG 2 cut(s) 583, 589
Sse9I AATT 2 cut(s) 417, 546
SsiI CCGC 5 cut(s) 18, 313, 319, 325, 355
StyD4I CCNGG 7 cut(s) 64, 65, 76, 77, 229, 339, 426
TaaI ACNGT 2 cut(s) 289, 601
TaqI TCGA 4 cut(s) 60, 278, 335, 359
TasI AATT 2 cut(s) 417, 546
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 497
TspMI CCCGGG 2 cut(s) 65, 77
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 546
XceI RCATGY 1 cut(s) 577
XmaI CCCGGG 2 cut(s) 65, 77
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.