Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015240

Physical Location & Seq

Genomic Coordinates Forward (+)

12125852 .. 12126553

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAGCACCAACGCTTCGTTCCTTCCCTTTCCTCCTCCCCCCTTCCCTCTCTATCTAAATTAGAAGTTCAGAGAGCTTTTGTTGTAGCCACCATGTTATCTACTCTTCCAGCCAATCTTCCCTCTGATTCCCTCCTCCATTTATCCGCTTTCGACGGGGGCTTTACCCCCGGCGGCTTTACCCCGTGGGATTGCTCGGACCTTTTTCAGGCAACCCCATCCCCTGAACCCGTGATATCAACCCTAAGTTCATCTCCAGTTCAGTCTCCCAAAACAGTGATTTCGAGTTCTGGTTCGGATGACGACCCGAACCGGCCGGACCGGTCCCATGCCAACGCGAAGTCATGCCAAAATGACGACTCGAACCGGACGGTTTCTGTGGTGGACGAGCGGAAGAGGAGGCGGATGATATCGAACCGGGAGTCAGCCAGGCGGTCACGGATGCGAAAACAAAAGCACTTAGAAAACCTACGGAACCAGGTGAACCGGCTTAGGGTTGAGAACCGGGAATTGAACAACCGGTTGAGGATCGTTTTGTACCATTCTCAGTGCGTACGGACAGACAACGATAGGCTCCGATCCGACCACGCTATGCTCCGGCGGAAATTGTCGGACATACGTCGAATTTTGGTTTTCAGTCAACTACAGCACTTTTCTTCTGCATGGCCCTGCAATACCATTATTCCAGAACAAACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_2

Protein Analysis

234

Amino Acids

26.48

Weight (kDa)

10.41

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	129 - 175	1e-05	Basic region leucine zipper
bZIP_1	PF00170	131 - 175	5.2e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49760
malus_domestica	MD02G1189300.v1.1 MD15G1300200.v1.1
prunus_persica	Prupe.6G217300_v2.0.a1
pyrus_communis	pycom02g15350 pycom15g26280
rosa_chinensis	RchiOBHm_Chr2g0108691
rosa_laevigata	RLG00000017685
rosa_multiflora	Rmu_co8051662.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134910
rosa_rugosa	Rorug02G0155200
rosa_samantha	Rh2AG204900 Rh2BG216800 Rh2CG208000 Rh2DG211200
rosa_wichuraiana	Rw2G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	391
AccII	CGCG	1 cut(s)	338
AciI	CCGC	6 cut(s)	147, 174, 391, 403, 433, 601
AclWI	GGATC	2 cut(s)	536, 573
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	2 cut(s)	539, 555
AfiI	CCNNNNNNNGG	2 cut(s)	208, 493
AgeI	ACCGGT	2 cut(s)	321, 519
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	428, 477
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	536, 573
AoxI	GGCC	2 cut(s)	314, 665
ApoI	RAATTY	1 cut(s)	624
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AsiGI	ACCGGT	2 cut(s)	321, 519
AspS9I	GGNCC	4 cut(s)	199, 319, 324, 666
AsuC2I	CCSGG	3 cut(s)	171, 419, 506
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	3 cut(s)	199, 319, 324
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	430, 479
BcnI	CCSGG	3 cut(s)	171, 419, 506
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	644
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	5 cut(s)	171, 419, 430, 479, 506
Bme18I	GGWCC	3 cut(s)	199, 319, 324
BmgT120I	GGNCC	4 cut(s)	199, 319, 324, 666
BmiI	GGNNCC	3 cut(s)	326, 476, 575
BmrFI	CCNGG	5 cut(s)	171, 419, 430, 479, 506
BmsI	GCATC	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	171, 419, 506
BsaJI	CCNNGG	2 cut(s)	169, 185
BsaWI	WCCGGW	3 cut(s)	321, 366, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 493
Bse118I	RCCGGY	4 cut(s)	312, 321, 486, 519
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	430, 479
BseDI	CCNNGG	2 cut(s)	169, 185
BseGI	GGATG	4 cut(s)	218, 304, 411, 447
BseLI	CCNNNNNNNGG	2 cut(s)	208, 493
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	25, 125, 412
BseX3I	CGGCCG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	316, 667
BshTI	ACCGGT	2 cut(s)	321, 519
BsiEI	CGRYCG	1 cut(s)	317
BsiWI	CGTACG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	208, 493
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	316, 667
Bsp143I	GATC	2 cut(s)	528, 578
BspACI	CCGC	6 cut(s)	147, 174, 391, 403, 433, 601
BspANI	GGCC	2 cut(s)	316, 667
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	326, 476, 575
BspPI	GGATC	2 cut(s)	536, 573
BsrBI	CCGCTC	1 cut(s)	391
BsrFI	RCCGGY	4 cut(s)	312, 321, 486, 519
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	4 cut(s)	312, 321, 486, 519
BssECI	CCNNGG	2 cut(s)	169, 185
BssMI	GATC	2 cut(s)	528, 578
Bst2UI	CCWGG	2 cut(s)	430, 479
Bst4CI	ACNGT	2 cut(s)	277, 373
Bst6I	CTCTTC	2 cut(s)	111, 389
BstDEI	CTNAG	4 cut(s)	245, 460, 491, 546
BstDSI	CCRYGG	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	218, 304, 411, 447
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	531, 581
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	528, 578
BstMCI	CGRYCG	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	430, 479
BstPAI	GACNNNNGTC	1 cut(s)	618
BstSCI	CCNGG	5 cut(s)	169, 417, 428, 477, 504
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	316, 667
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	4 cut(s)	218, 304, 411, 447
BtsIMutI	CAGTG	2 cut(s)	282, 554
Cfr10I	RCCGGY	4 cut(s)	312, 321, 486, 519
Cfr13I	GGNCC	4 cut(s)	199, 319, 324, 666
CpoI	CGGWCCG	1 cut(s)	319
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	538, 554
CspAI	ACCGGT	2 cut(s)	321, 519
CspI	CGGWCCG	1 cut(s)	319
CviAII	CATG	4 cut(s)	94, 329, 345, 663
CviQI	GTAC	2 cut(s)	538, 554
DdeI	CTNAG	4 cut(s)	245, 460, 491, 546
DpnI	GATC	2 cut(s)	530, 580
DpnII	GATC	2 cut(s)	528, 578
EaeI	YGGCCR	1 cut(s)	314
EagI	CGGCCG	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	111, 389
EarI	CTCTTC	2 cut(s)	111, 389
EciI	GGCGGA	2 cut(s)	418, 616
EclXI	CGGCCG	1 cut(s)	314
Eco32I	GATATC	2 cut(s)	237, 411
Eco47I	GGWCC	3 cut(s)	199, 319, 324
Eco52I	CGGCCG	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	428, 477
EcoRV	GATATC	2 cut(s)	237, 411
FaeI	CATG	4 cut(s)	97, 332, 348, 666
FaiI	YATR	7 cut(s)	95, 330, 346, 593, 617, 664, 700
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	93, 328, 344, 662
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	4 cut(s)	205, 311, 418, 454
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	316, 667
Hin1II	CATG	4 cut(s)	97, 332, 348, 666
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HinfI	GANTC	3 cut(s)	128, 359, 422
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	385, 484, 641
Hpy188I	TCNGA	7 cut(s)	72, 127, 199, 298, 578, 583, 613
Hpy188III	TCNNGA	1 cut(s)	686
Hpy8I	GTNNAC	3 cut(s)	385, 484, 641
Hpy99I	CGWCG	2 cut(s)	158, 624
HpyAV	CCTTC	2 cut(s)	33, 53
HpyCH4III	ACNGT	2 cut(s)	277, 373
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	2 cut(s)	662, 672
HpyF3I	CTNAG	4 cut(s)	245, 460, 491, 546
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	4 cut(s)	97, 332, 348, 666
Kzo9I	GATC	2 cut(s)	528, 578
LmnI	GCTCC	2 cut(s)	579, 600
LweI	GCATC	1 cut(s)	432
MabI	ACCWGGT	1 cut(s)	477
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	2 cut(s)	530, 580
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	2 cut(s)	528, 578
MboII	GAAGA	4 cut(s)	98, 110, 406, 648
MluCI	AATT	4 cut(s)	59, 509, 605, 624
MlyI	GAGTC	2 cut(s)	353, 431
MmeI	TCCRAC	2 cut(s)	591, 606
MnlI	CCTC	9 cut(s)	43, 46, 58, 133, 143, 146, 390, 393, 519
MspR9I	CCNGG	5 cut(s)	171, 419, 430, 479, 506
MvaI	CCWGG	2 cut(s)	430, 479
MvnI	CGCG	1 cut(s)	338
NciI	CCSGG	3 cut(s)	171, 419, 506
NdeII	GATC	2 cut(s)	528, 578
NlaIII	CATG	4 cut(s)	97, 332, 348, 666
NlaIV	GGNNCC	3 cut(s)	326, 476, 575
NmuCI	GTSAC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	128
Pfl23II	CGTACG	1 cut(s)	553
PinAI	ACCGGT	2 cut(s)	321, 519
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	2 cut(s)	353, 430
PpsI	GAGTC	2 cut(s)	353, 430
PshAI	GACNNNNGTC	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	428, 477
PspGI	CCWGG	2 cut(s)	428, 477
PspLI	CGTACG	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	326, 476, 575
PspPI	GGNCC	4 cut(s)	199, 319, 324, 666
RsaI	GTAC	2 cut(s)	539, 555
RsaNI	GTAC	2 cut(s)	538, 554
Rsr2I	CGGWCCG	1 cut(s)	319
RsrII	CGGWCCG	1 cut(s)	319
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	528, 578
Sau96I	GGNCC	4 cut(s)	199, 319, 324, 666
SchI	GAGTC	2 cut(s)	353, 431
ScrFI	CCNGG	5 cut(s)	171, 419, 430, 479, 506
SetI	ASST	5 cut(s)	79, 204, 471, 483, 622
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	644
SinI	GGWCC	3 cut(s)	199, 319, 324
Sse9I	AATT	4 cut(s)	59, 509, 605, 624
SsiI	CCGC	6 cut(s)	147, 174, 391, 403, 433, 601
StyD4I	CCNGG	5 cut(s)	169, 417, 428, 477, 504
TaaI	ACNGT	2 cut(s)	277, 373
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	5 cut(s)	153, 284, 362, 413, 622
TasI	AATT	4 cut(s)	59, 509, 605, 624
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	2 cut(s)	282, 554
TseFI	GTSAC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	17, 240
TspGWI	ACGGA	3 cut(s)	454, 487, 571
TspRI	CASTG	2 cut(s)	282, 554
VpaK11BI	GGWCC	3 cut(s)	199, 319, 324
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.