Rroxscaffold_2G00134910
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015240
Physical Location & Seq
Reverse (-)
72480448 .. 72483769
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134910.1

Sequence Viewer

Length: 717 bp
ATGAGAGAGATATCAGCCGGTGAAGGAAGAGCAGCTCGGCGAATTCCACCGAGTCGTGCAGCTTCTCGTACTCCTAGCGCCTTCCACGCCATGTTGTCTACCATTCCCGCCATGCTTCCTTCAGAAACCCTTCTTCATTTTCCGGCTTTCGATCCCGGGTTCACCCCCGGGGGCTTTACCCCGTGGGAGTCGGAACTTTGTCCGGCTATCAAGTATTCCCCTAAACCCGTAATCTCCAACCCCAGTTCCGATGCTGACCAAACCCCATCCCCCAATCCGGTCATTTCCAGCTCCGGTTCGGATGACGACCCAAACCGGCCGGGCCGGTCCGGCCCAGACCATGCGAAGTCATGCCCGATTAACGGCTCGAAGCGTACGGTGTCGGTTTCGCCGGTGGACGAGCGGAAGCGGAGGCGGATGATATCGAACCGGGAGTCGGCGAGGCGGTCCAGGATGCGAAAACAAAAGCACATAGAAAACCTAAGGACCCAGGTCAACAGGCTAAGAATTGAGAACCGGGAACTGAACAACCGGCTCCGGTTTGTCATTTACCATTTTCAGAGGGTACATACGGACAACGATATGCTCCGAGCCGAGCACACGATGCTCCAACAGAAGTTATCGGACATACGCCAAATTTTGGTTTTCCGGCGACTCCAGCACATGTCATCTGCATGGCCATGCGATACCGTTATTACCGAACAAACGCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

238

Amino Acids

27.06

Weight (kDa)

10.6

Isoelectric Point (pI)

71.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 133 - 179 2.2e-06 Basic region leucine zipper
bZIP_1 PF00170 135 - 179 6.6e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49760
malus_domestica MD02G1189300.v1.1 MD15G1300200.v1.1
prunus_persica Prupe.6G217300_v2.0.a1
pyrus_communis pycom02g15350 pycom15g26280
rosa_chinensis RchiOBHm_Chr2g0108691
rosa_laevigata RLG00000017685
rosa_multiflora Rmu_co8051662.1_g000001
rosa_roxburghii Rroxscaffold_2G00134910
rosa_rugosa Rorug02G0155200
rosa_samantha Rh2AG204900 Rh2BG216800 Rh2CG208000 Rh2DG211200
rosa_wichuraiana Rw2G016320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 640
AccBSI CCGCTC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 98
AciI CCGC 5 cut(s) 108, 403, 409, 415, 445
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 317, 677
AcsI RAATTY 2 cut(s) 42, 636
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 3 cut(s) 70, 376, 567
AfiI CCNNNNNNNGG 4 cut(s) 277, 362, 436, 640
AflIII ACRYGT 1 cut(s) 663
AjnI CCWGG 2 cut(s) 449, 489
AluBI AGCT 3 cut(s) 35, 62, 291
AluI AGCT 3 cut(s) 35, 62, 291
Alw21I GWGCWC 1 cut(s) 600
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 2 cut(s) 155, 167
AoxI GGCC 4 cut(s) 317, 322, 331, 677
ApeKI GCWGC 2 cut(s) 32, 59
ApoI RAATTY 2 cut(s) 42, 636
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 5 cut(s) 322, 327, 332, 447, 486
AsuC2I CCSGG 7 cut(s) 156, 157, 168, 169, 321, 431, 518
AsuHPI GGTGA 2 cut(s) 32, 154
AvaI CYCGRG 2 cut(s) 155, 167
AvaII GGWCC 3 cut(s) 327, 447, 486
AxyI CCTNAGG 1 cut(s) 482
BalI TGGCCA 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 44, 71
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 2 cut(s) 451, 491
BcnI CCSGG 7 cut(s) 156, 157, 168, 169, 321, 431, 518
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 33, 60
BlsI GCNGC 2 cut(s) 34, 61
Bme1390I CCNGG 9 cut(s) 156, 157, 168, 169, 321, 431, 451, 491, 518
Bme18I GGWCC 3 cut(s) 327, 447, 486
BmeT110I CYCGRG 2 cut(s) 155, 167
BmgT120I GGNCC 5 cut(s) 322, 327, 332, 447, 486
BmiI GGNNCC 2 cut(s) 488, 536
BmrFI CCNGG 9 cut(s) 156, 157, 168, 169, 321, 431, 451, 491, 518
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 241, 444, 594
BmuI ACTGGG 1 cut(s) 237
BoxI GACNNNNGTC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 641
BpuMI CCSGG 7 cut(s) 156, 157, 168, 169, 321, 431, 518
BsaJI CCNNGG 6 cut(s) 155, 166, 167, 168, 182, 489
BsaWI WCCGGW 3 cut(s) 277, 293, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 362, 436, 640
Bse118I RCCGGY 5 cut(s) 17, 315, 324, 391, 531
Bse1I ACTGG 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 482
BseBI CCWGG 2 cut(s) 451, 491
BseDI CCNNGG 6 cut(s) 155, 166, 167, 168, 182, 489
BseGI GGATG 4 cut(s) 266, 307, 423, 459
BseLI CCNNNNNNNGG 4 cut(s) 277, 362, 436, 640
BseNI ACTGG 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 44, 71
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 4 cut(s) 319, 324, 333, 679
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 2 cut(s) 155, 167
BsiWI CGTACG 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 277, 362, 436, 640
BsnI GGCC 4 cut(s) 319, 324, 333, 679
BsoBI CYCGRG 2 cut(s) 155, 167
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 5 cut(s) 108, 403, 409, 415, 445
BspANI GGCC 4 cut(s) 319, 324, 333, 679
BspLI GGNNCC 2 cut(s) 488, 536
BspPI GGATC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 403
BsrFI RCCGGY 5 cut(s) 17, 315, 324, 391, 531
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 5 cut(s) 17, 315, 324, 391, 531
BssECI CCNNGG 6 cut(s) 155, 166, 167, 168, 182, 489
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 451, 491
Bst4CI ACNGT 2 cut(s) 379, 691
Bst6I CTCTTC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 604
BstDEI CTNAG 2 cut(s) 482, 503
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 4 cut(s) 266, 307, 423, 459
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 4 cut(s) 86, 330, 604, 658
BstNI CCWGG 2 cut(s) 451, 491
BstNSI RCATGY 1 cut(s) 667
BstPAI GACNNNNGTC 1 cut(s) 491
BstSCI CCNGG 9 cut(s) 154, 155, 166, 167, 319, 429, 449, 489, 516
BstV1I GCAGC 2 cut(s) 44, 71
BstZI CGGCCG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 4 cut(s) 319, 324, 333, 679
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 4 cut(s) 266, 307, 423, 459
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 5 cut(s) 17, 315, 324, 391, 531
Cfr13I GGNCC 5 cut(s) 322, 327, 332, 447, 486
Cfr9I CCCGGG 2 cut(s) 155, 167
CpoI CGGWCCG 1 cut(s) 327
Csp6I GTAC 3 cut(s) 69, 375, 566
CspI CGGWCCG 1 cut(s) 327
CviAII CATG 7 cut(s) 91, 112, 341, 351, 664, 675, 681
CviQI GTAC 3 cut(s) 69, 375, 566
DdeI CTNAG 2 cut(s) 482, 503
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 317, 677
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 317
Eco32I GATATC 2 cut(s) 12, 423
Eco47I GGWCC 3 cut(s) 327, 447, 486
Eco52I CGGCCG 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 155, 167
EcoO109I RGGNCCY 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 449, 489
EcoRV GATATC 2 cut(s) 12, 423
FaeI CATG 7 cut(s) 94, 115, 344, 354, 667, 678, 684
FatI CATG 7 cut(s) 90, 111, 340, 350, 663, 674, 680
FauI CCCGC 1 cut(s) 115
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 33, 60
FokI GGATG 4 cut(s) 253, 314, 430, 466
Fsp4HI GCNGC 2 cut(s) 33, 60
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 33, 60
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 4 cut(s) 319, 324, 333, 679
HhaI GCGC 1 cut(s) 80
Hin1II CATG 7 cut(s) 94, 115, 344, 354, 667, 678, 684
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 4 cut(s) 52, 188, 434, 654
HphI GGTGA 2 cut(s) 32, 154
Hpy166II GTNNAC 4 cut(s) 99, 162, 397, 496
Hpy188I TCNGA 7 cut(s) 124, 193, 250, 301, 561, 590, 625
Hpy8I GTNNAC 4 cut(s) 99, 162, 397, 496
HpyAV CCTTC 4 cut(s) 17, 91, 129, 140
HpyCH4III ACNGT 2 cut(s) 379, 691
HpyCH4V TGCA 2 cut(s) 59, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 330, 604, 658
HpyF3I CTNAG 2 cut(s) 482, 503
Hsp92II CATG 7 cut(s) 94, 115, 344, 354, 667, 678, 684
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 4 cut(s) 296, 540, 591, 612
Lsp1109I GCAGC 2 cut(s) 44, 71
LweI GCATC 3 cut(s) 241, 444, 594
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 403
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 39, 125
MhlI GDGCHC 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 3 cut(s) 42, 507, 636
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 4 cut(s) 61, 197, 443, 648
MmeI TCCRAC 3 cut(s) 171, 261, 634
MnlI CCTC 3 cut(s) 405, 435, 555
Mox20I TGGCCA 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 129
MscI TGGCCA 1 cut(s) 679
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 673, 679
Msp20I TGGCCA 1 cut(s) 679
MspR9I CCNGG 9 cut(s) 156, 157, 168, 169, 321, 431, 451, 491, 518
MvaI CCWGG 2 cut(s) 451, 491
MwoI GCNNNNNNNGC 4 cut(s) 86, 330, 604, 658
NciI CCSGG 7 cut(s) 156, 157, 168, 169, 321, 431, 518
NdeII GATC 1 cut(s) 151
NlaIII CATG 7 cut(s) 94, 115, 344, 354, 667, 678, 684
NlaIV GGNNCC 2 cut(s) 488, 536
NmeAIII GCCGAG 2 cut(s) 16, 619
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PciSI GCTCTTC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 129
Pfl23II CGTACG 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 2 cut(s) 34, 61
PleI GAGTC 4 cut(s) 60, 196, 442, 648
PpsI GAGTC 4 cut(s) 60, 196, 442, 648
PpuMI RGGWCCY 1 cut(s) 486
PscI ACATGT 1 cut(s) 663
PshAI GACNNNNGTC 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 449, 489
PspGI CCWGG 2 cut(s) 449, 489
PspLI CGTACG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 488, 536
PspPI GGNCC 5 cut(s) 322, 327, 332, 447, 486
PspPPI RGGWCCY 1 cut(s) 486
RsaI GTAC 3 cut(s) 70, 376, 567
RsaNI GTAC 3 cut(s) 69, 375, 566
RseI CAYNNNNRTG 2 cut(s) 673, 679
Rsr2I CGGWCCG 1 cut(s) 327
RsrII CGGWCCG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 33, 60
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 5 cut(s) 322, 327, 332, 447, 486
SchI GAGTC 4 cut(s) 61, 197, 443, 648
ScrFI CCNGG 9 cut(s) 156, 157, 168, 169, 321, 431, 451, 491, 518
SduI GDGCHC 1 cut(s) 600
SetI ASST 5 cut(s) 37, 64, 293, 483, 495
SfaNI GCATC 3 cut(s) 241, 444, 594
SfiI GGCCNNNNNGGCC 1 cut(s) 330
SgrAI CRCCGGYG 1 cut(s) 391
SinI GGWCC 3 cut(s) 327, 447, 486
SmaI CCCGGG 2 cut(s) 157, 169
SmiMI CAYNNNNRTG 2 cut(s) 673, 679
Sse9I AATT 3 cut(s) 42, 507, 636
SsiI CCGC 5 cut(s) 108, 403, 409, 415, 445
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 9 cut(s) 154, 155, 166, 167, 319, 429, 449, 489, 516
TaaI ACNGT 2 cut(s) 379, 691
TaqI TCGA 3 cut(s) 150, 368, 425
TasI AATT 3 cut(s) 42, 507, 636
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseI GCWGC 2 cut(s) 32, 59
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 587
TspMI CCCGGG 2 cut(s) 155, 167
Van91I CCANNNNNTGG 1 cut(s) 640
VpaK11BI GGWCC 3 cut(s) 327, 447, 486
XapI RAATTY 2 cut(s) 42, 636
XceI RCATGY 1 cut(s) 667
XmaI CCCGGG 2 cut(s) 155, 167
XmiI GTMKAC 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.