AT3G49790

Protein PHLOEM PROTEIN 2-LIKE A10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016538
Physical Location & Seq
Reverse (-)
18467959 .. 18469962
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49790.1

Sequence Viewer

Length: 1101 bp
ATGGATAAGTTAGGGTTGAGCAAAAGGGGTTATTTTGATTTCGCTCTCAAGAACAAAAAATGGATATTATTAGCAGTAAGTGGTTACGGTGCTTTTAGGGTTTATCATTCTCCTTCAATTTCCCAGAAACGGAAACGAATCTCTAAGCTTTTCACTCTTCTTCTCAATCTCATCGAAGCTGCTTCTGATTCCGCTGAAACCGTTAGTGTTATCTCCAAAGATCTAACAGAGTTTCTCAGATCCGATTCAGATCAAATCCCAAATAGTTTGAAGCAGATTTCCAAAATCGCGAAATCAGATGAGCTTAATTCTTCTTTGATCCGATTCACTCAAGCTATGACCGTTGGATTGATCCGTGGAATTGATGATGGATCCGGGTCGGGTTTTACTGATCGGGTTATGGATAAGCTCTTTACGAAATCCGGGTCGGGTTTTGCTTCGGCGATTGTTGGTAGCTTTGCGAGGAACTTAGTCGTTGCGCTTTATTCCTCCGCCGGCGATGGATCGAATTCGAAATTGCTCGACGCGGTTTTCTCTGATGATGGGAGGAGATTGATCGGCGATTGCGTTCAGCGTTTCGTGAGTACTGCGGTTTCGGTTTATCTCGATAAGACGAGCGATGTTAACGTATTCGACGATTTATTCGCCGGTTTAACCAATCCGAAACATGAAGGAAAGGTTAAGCAAACGCTTGTAACGCTATGTAACAGCGCGGTTGAGACGTTTGTAAGAGCGTCGCGGAAACCGGTTCAATTGAACCGGTCATCGTCATGTCAAGATTCGTCTCAAACGCTGACCGTTGGATCAACGAAACAAGCGACGTGGATCGATCGGGTGTCGTCGTCGTTATCGGTACCGAGTAACCGGAAATATGTGGTGGATTTAACCGGGCGGGTAACGTTTGAGACGGTTAGATCGTTGTTAGAAGTGTTGATTGAGAGAGCAAATGGTAAAGTGGAGAGTTATGTGGAGAAAGTGAGAGAGAGAGGAAATGAGACAAGGAGATTTGTGAGAGTTAAAACATCACTTCTTCATAGTTTATGTTTGTCTCTCTGTTTACAGATTGTTGAAGCTCCATGGATGCTGACTCCAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

40.34

Weight (kDa)

9.59

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016538)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49790
fragaria_vesca FvH4_1g18080
malus_domestica MD02G1189000.v1.1
prunus_persica Prupe.6G217700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108551
rosa_laevigata RLG00000017678
rosa_multiflora Rmu_sc0007574.1_g000007
rosa_roxburghii Rroxscaffold_2G00135030
rosa_rugosa Rorug02G0154400
rosa_samantha Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana Rw2G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 853
AccII CGCG 4 cut(s) 290, 527, 713, 739
AciI CCGC 7 cut(s) 192, 492, 527, 590, 713, 739, 892
AclI AACGTT 1 cut(s) 899
AclWI GGATC 8 cut(s) 234, 313, 346, 366, 379, 511, 811, 833
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 2 cut(s) 586, 855
AfiI CCNNNNNNNGG 1 cut(s) 129
AgeI ACCGGT 2 cut(s) 745, 759
AgsI TTSAA 5 cut(s) 117, 271, 752, 757, 1070
AjiI CACGTC 1 cut(s) 822
AluBI AGCT 7 cut(s) 148, 179, 304, 335, 409, 456, 1073
AluI AGCT 7 cut(s) 148, 179, 304, 335, 409, 456, 1073
Alw26I GTCTC 5 cut(s) 713, 789, 899, 989, 1053
AlwI GGATC 8 cut(s) 234, 313, 346, 366, 379, 511, 811, 833
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 4 cut(s) 410, 442, 626, 658
AsiGI ACCGGT 2 cut(s) 745, 759
Asp718I GGTACC 1 cut(s) 853
AspLEI GCGC 2 cut(s) 481, 713
AsuC2I CCSGG 3 cut(s) 376, 424, 889
AsuII TTCGAA 1 cut(s) 512
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 853
BbvI GCAGC 1 cut(s) 166
BccI CCATC 3 cut(s) 362, 494, 536
BcnI CCSGG 3 cut(s) 376, 424, 889
BcoDI GTCTC 5 cut(s) 713, 789, 899, 989, 1053
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 376, 424, 889
BmgBI CACGTC 1 cut(s) 822
BmiI GGNNCC 2 cut(s) 373, 855
BmrFI CCNGG 3 cut(s) 376, 424, 889
BmsI GCATC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 2 cut(s) 32, 315
BpuMI CCSGG 3 cut(s) 376, 424, 889
Bsa29I ATCGAT 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 355, 1076
BsaWI WCCGGW 3 cut(s) 745, 759, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 4 cut(s) 494, 647, 745, 759
Bse8I GATNNNNATC 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 2 cut(s) 355, 1076
BseGI GGATG 1 cut(s) 1086
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 4 cut(s) 290, 527, 713, 739
Bsh1285I CGRYCG 1 cut(s) 832
BshNI GGYRCC 1 cut(s) 853
BshTI ACCGGT 2 cut(s) 745, 759
BshVI ATCGAT 1 cut(s) 828
BsiEI CGRYCG 1 cut(s) 832
BsiSI CCGG 8 cut(s) 375, 423, 495, 648, 746, 760, 865, 888
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 5 cut(s) 713, 789, 899, 989, 1053
BsmBI CGTCTC 3 cut(s) 713, 789, 899
Bsp119I TTCGAA 1 cut(s) 512
Bsp19I CCATGG 1 cut(s) 1076
Bsp68I TCGCGA 1 cut(s) 290
BspACI CCGC 7 cut(s) 192, 492, 527, 590, 713, 739, 892
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 828
BspFNI CGCG 4 cut(s) 290, 527, 713, 739
BspLI GGNNCC 2 cut(s) 373, 855
BspPI GGATC 8 cut(s) 234, 313, 346, 366, 379, 511, 811, 833
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 853
BsrFI RCCGGY 4 cut(s) 494, 647, 745, 759
BssAI RCCGGY 4 cut(s) 494, 647, 745, 759
BssECI CCNNGG 2 cut(s) 355, 1076
BssT1I CCWWGG 1 cut(s) 1076
Bst4CI ACNGT 5 cut(s) 89, 202, 343, 799, 910
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 3 cut(s) 144, 236, 469
BstDSI CCRYGG 2 cut(s) 355, 1076
BstF5I GGATG 1 cut(s) 1086
BstFNI CGCG 4 cut(s) 290, 527, 713, 739
BstHHI GCGC 2 cut(s) 481, 713
BstMAI GTCTC 5 cut(s) 713, 789, 899, 989, 1053
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstSCI CCNGG 3 cut(s) 374, 422, 887
BstUI CGCG 4 cut(s) 290, 527, 713, 739
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 3 cut(s) 220, 239, 371
BstYI RGATCY 3 cut(s) 220, 239, 371
Bsu15I ATCGAT 1 cut(s) 828
BsuTUI ATCGAT 1 cut(s) 828
BtgI CCRYGG 2 cut(s) 355, 1076
BtgZI GCGATG 2 cut(s) 513, 633
BtrI CACGTC 1 cut(s) 822
BtsCI GGATG 1 cut(s) 1086
BtuMI TCGCGA 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 496
CfoI GCGC 2 cut(s) 481, 713
Cfr10I RCCGGY 4 cut(s) 494, 647, 745, 759
ClaI ATCGAT 1 cut(s) 828
CseI GACGC 2 cut(s) 533, 723
Csp6I GTAC 2 cut(s) 585, 854
CspAI ACCGGT 2 cut(s) 745, 759
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 3 cut(s) 668, 771, 1077
CviJI RGCY 7 cut(s) 148, 179, 304, 335, 409, 456, 1073
CviKI_1 RGCY 7 cut(s) 148, 179, 304, 335, 409, 456, 1073
CviQI GTAC 2 cut(s) 585, 854
DdeI CTNAG 3 cut(s) 144, 236, 469
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 1076
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 1076
ErhI CCWWGG 1 cut(s) 1076
Esp3I CGTCTC 3 cut(s) 713, 789, 899
FaeI CATG 3 cut(s) 671, 774, 1080
FatI CATG 3 cut(s) 667, 770, 1076
FauI CCCGC 1 cut(s) 885
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 1093
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 2 cut(s) 480, 712
GluI GCNGC 1 cut(s) 180
HapII CCGG 8 cut(s) 375, 423, 495, 648, 746, 760, 865, 888
HgaI GACGC 2 cut(s) 533, 723
HhaI GCGC 2 cut(s) 481, 713
Hin1II CATG 3 cut(s) 671, 774, 1080
Hin6I GCGC 2 cut(s) 479, 711
HinP1I GCGC 2 cut(s) 479, 711
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 138, 188, 245, 324, 779, 1087
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 8 cut(s) 375, 423, 495, 648, 746, 760, 865, 888
Hpy166II GTNNAC 2 cut(s) 625, 1058
Hpy188I TCNGA 8 cut(s) 187, 239, 244, 250, 298, 323, 538, 663
Hpy188III TCNNGA 5 cut(s) 49, 289, 580, 605, 776
Hpy8I GTNNAC 2 cut(s) 625, 1058
Hpy99I CGWCG 6 cut(s) 527, 638, 739, 823, 844, 847
HpyAV CCTTC 2 cut(s) 123, 665
HpyCH4III ACNGT 5 cut(s) 89, 202, 343, 799, 910
HpyCH4IV ACGT 4 cut(s) 627, 722, 821, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 3 cut(s) 144, 236, 469
HpySE526I ACGT 4 cut(s) 627, 722, 821, 899
Hsp92II CATG 3 cut(s) 671, 774, 1080
HspAI GCGC 2 cut(s) 479, 711
KpnI GGTACC 1 cut(s) 857
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 625
LmnI GCTCC 1 cut(s) 1078
LpnPI CCDG 9 cut(s) 137, 388, 436, 508, 661, 759, 773, 878, 901
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 1071
MaeII ACGT 4 cut(s) 627, 722, 821, 899
MaeIII GTNAC 5 cut(s) 83, 694, 704, 860, 895
MboII GAAGA 4 cut(s) 149, 152, 303, 1022
MfeI CAATTG 1 cut(s) 752
MflI RGATCY 3 cut(s) 220, 239, 371
MluCI AATT 6 cut(s) 117, 307, 360, 508, 515, 752
MlyI GAGTC 1 cut(s) 1081
MmeI TCCRAC 2 cut(s) 325, 781
MnlI CCTC 4 cut(s) 456, 499, 540, 980
MreI CGCCGGCG 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 494
MseI TTAA 6 cut(s) 306, 624, 653, 681, 884, 1017
MslI CAYNNNNRTG 1 cut(s) 769
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 8 cut(s) 375, 423, 495, 648, 746, 760, 865, 888
MspR9I CCNGG 3 cut(s) 376, 424, 889
MunI CAATTG 1 cut(s) 752
MvnI CGCG 4 cut(s) 290, 527, 713, 739
MwoI GCNNNNNNNGC 1 cut(s) 697
NaeI GCCGGC 1 cut(s) 496
NciI CCSGG 3 cut(s) 376, 424, 889
NcoI CCATGG 1 cut(s) 1076
NgoMIV GCCGGC 1 cut(s) 494
NlaIII CATG 3 cut(s) 671, 774, 1080
NlaIV GGNNCC 2 cut(s) 373, 855
NruI TCGCGA 1 cut(s) 290
NspV TTCGAA 1 cut(s) 512
PcsI WCGNNNNNNNCGW 4 cut(s) 564, 633, 815, 914
PdiI GCCGGC 1 cut(s) 496
PfeI GAWTC 5 cut(s) 138, 188, 245, 324, 779
PinAI ACCGGT 2 cut(s) 745, 759
PkrI GCNGC 1 cut(s) 181
Ple19I CGATCG 1 cut(s) 832
PleI GAGTC 1 cut(s) 1081
PpsI GAGTC 1 cut(s) 1081
Psp1406I AACGTT 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 373, 855
PsuI RGATCY 3 cut(s) 220, 239, 371
PvuI CGATCG 1 cut(s) 832
RruI TCGCGA 1 cut(s) 290
RsaI GTAC 2 cut(s) 586, 855
RsaNI GTAC 2 cut(s) 585, 854
RseI CAYNNNNRTG 1 cut(s) 769
SaqAI TTAA 6 cut(s) 306, 624, 653, 681, 884, 1017
SatI GCNGC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 1 cut(s) 1081
ScrFI CCNGG 3 cut(s) 376, 424, 889
SfaNI GCATC 1 cut(s) 1071
SfuI TTCGAA 1 cut(s) 512
SgrAI CRCCGGYG 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 769
SmlI CTYRAG 2 cut(s) 47, 330
SmoI CTYRAG 2 cut(s) 47, 330
Sse9I AATT 6 cut(s) 117, 307, 360, 508, 515, 752
SsiI CCGC 7 cut(s) 192, 492, 527, 590, 713, 739, 892
StyD4I CCNGG 3 cut(s) 374, 422, 887
StyI CCWWGG 1 cut(s) 1076
TaaI ACNGT 5 cut(s) 89, 202, 343, 799, 910
TaiI ACGT 4 cut(s) 630, 725, 824, 902
TaqI TCGA 7 cut(s) 174, 506, 512, 522, 606, 633, 828
TasI AATT 6 cut(s) 117, 307, 360, 508, 515, 752
TatI WGTACW 1 cut(s) 584
TfiI GAWTC 5 cut(s) 138, 188, 245, 324, 779
Tru1I TTAA 6 cut(s) 306, 624, 653, 681, 884, 1017
Tru9I TTAA 6 cut(s) 306, 624, 653, 681, 884, 1017
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 684, 1022
TspGWI ACGGA 2 cut(s) 145, 344
XapI RAATTY 1 cut(s) 508
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.