Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016538

Physical Location & Seq

Genomic Coordinates Forward (+)

19053852 .. 19055071

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGACCTGGAATTGGCCAAAAAGGGTTTTGATTTTGCCCGGAAAAGGAACAAGTGGCTGTTTGTAATGGCTGCTTTGGGCTTCTCTGGTTATGGTGCTTATAGGGTTTATTACTTGCCTTCAGTGTGTCAAAAAAGAAAGAGGCTTTTGAAGCTTTTAGGGGCTTTAGTTTCTGTAGCTGAAGTAGTTTCAGACTCTGCTGAGTCGATTGGAGTTGTGTCTAAAGATTTGAAGGAGTTTTTGCAATCTGATTCTGATGAAATTCCGAATAGCTTGAAGCAAGTTTCGAAAATAGCTAGGTCAGATGAGTTTTCGGGGTCTGTTGTTAAGGTCACACAAGCTGTAACATTGGGTGTTTTGAGGGGTTATCAAGCACAAGCCAAGAGTCAGGGTCATGGTGATGATGGAGTTTCTGATAATTCAGGCTTTATGGATCAAGTTATGGATAAGCTTTTTACCAAGGCAGGGTCTGGTTTTGCATCTGTTGTTGTTGGAAGCTTTGCTAAGAATTTGGATCAATTTGGCATGAAGATGAATGATGTTCCAAGATGGGTGGATGTGGCTTGTAGCGAAAAGTGCAGAGACCTAATTGCTGATTGTATCCAGTTATTTGTAAGCACAGCTGTTGCGGTTTATCTTGACAAGACTATGGACATCAACACCTATGATGATATCTTCTCTGGGTTAACTAACCCCAAGCATGAAGCGAAAGTAAAAGATATGATGTTAGCAGTCTGTAATGGTGCGGTTGAAACTCTTGTTAGATCATCTCATCAAGTGTTAACAAGTTCAAAATCCAATGTGAACCATCCGAATTTGAGTTCAGGTTCTCAATTGGCCATTGATGATGGGAGAAAAGAGAGTGGGTGGATCGGTCAAGTATCCTCTACTTTGGCAGTTCCAAGCAATAGAAGGTTTGTTCTTGACTTGACTGGACGGGTTACATCTGAAACAGTTAGATCATCCTTGGATTTTTTGTTGGAGAGACTATTTGATGGGATGCAGAAACGTGTTAATTCTGCTCGTGTGGAAACTGTTGACAGGGGAGTTGAGGTTGTGAGATATGCTGTTGCAAAGTCTTCTGTTATCGCCACTATATGTCTATCTTTGTGTTTACACATAATTGATAGTCCATGGCTATTGGCACCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

41.91

Weight (kDa)

8.36

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49790
fragaria_vesca	FvH4_1g18080
malus_domestica	MD02G1189000.v1.1
prunus_persica	Prupe.6G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108551
rosa_laevigata	RLG00000017678
rosa_multiflora	Rmu_sc0007574.1_g000007
rosa_roxburghii	Rroxscaffold_2G00135030
rosa_rugosa	Rorug02G0154400
rosa_samantha	Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana	Rw2G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1144
AciI	CCGC	2 cut(s)	629, 746
AclWI	GGATC	3 cut(s)	441, 522, 878
AcoI	YGGCCR	2 cut(s)	15, 837
AcsI	RAATTY	3 cut(s)	261, 508, 814
AcuI	CTGAAG	2 cut(s)	105, 201
AfiI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
AflIII	ACRYGT	1 cut(s)	1009
AgsI	TTSAA	5 cut(s)	151, 232, 277, 752, 792
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	8 cut(s)	154, 179, 273, 296, 341, 451, 498, 623
AluI	AGCT	8 cut(s)	154, 179, 273, 296, 341, 451, 498, 623
Alw26I	GTCTC	2 cut(s)	576, 979
AlwI	GGATC	3 cut(s)	441, 522, 878
AlwNI	CAGNNNCTG	2 cut(s)	197, 470
AoxI	GGCC	2 cut(s)	15, 837
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	3 cut(s)	261, 508, 814
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	2 cut(s)	17, 839
BanI	GGYRCC	1 cut(s)	1144
BauI	CACGAG	1 cut(s)	1023
BbsI	GAAGAC	1 cut(s)	1071
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	398, 543, 816, 842, 989
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	2 cut(s)	611, 892
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	576, 979
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	2 cut(s)	611, 892
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	8, 40
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	1146
BmrFI	CCNGG	2 cut(s)	8, 40
BmsI	GCATC	2 cut(s)	488, 990
BpiI	GAAGAC	1 cut(s)	1071
Bpu14I	TTCGAA	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	459, 966, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	1038, 1068
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 45, 465
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	2 cut(s)	604, 937
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	459, 966, 1133
BseGI	GGATG	4 cut(s)	562, 808, 962, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	604, 937
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	17, 839
BshNI	GGYRCC	1 cut(s)	1144
BsiSI	CCGG	2 cut(s)	40, 1148
BslI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BsmAI	GTCTC	2 cut(s)	576, 979
BsnI	GGCC	2 cut(s)	17, 839
Bso31I	GGTCTC	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	433, 514, 764, 870, 959
Bsp19I	CCATGG	1 cut(s)	1133
BspACI	CCGC	2 cut(s)	629, 746
BspANI	GGCC	2 cut(s)	17, 839
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	1146
BspPI	GGATC	3 cut(s)	441, 522, 878
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	1144
BspTNI	GGTCTC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	2 cut(s)	604, 937
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	3 cut(s)	459, 966, 1133
BssMI	GATC	5 cut(s)	433, 514, 764, 870, 959
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	3 cut(s)	459, 966, 1133
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	955, 1036
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	201, 504, 1152
BstDSI	CCRYGG	1 cut(s)	1133
BstF5I	GGATG	4 cut(s)	562, 808, 962, 1005
BstKTI	GATC	5 cut(s)	436, 517, 767, 873, 962
BstMAI	GTCTC	2 cut(s)	576, 979
BstMBI	GATC	5 cut(s)	433, 514, 764, 870, 959
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 576
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 38
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	1071
BsuI	GTATCC	2 cut(s)	611, 892
BsuRI	GGCC	2 cut(s)	17, 839
BtgI	CCRYGG	1 cut(s)	1133
BtsCI	GGATG	4 cut(s)	562, 808, 962, 1005
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	2 cut(s)	197, 470
Cfr10I	RCCGGY	1 cut(s)	1147
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	534, 569
CviAII	CATG	4 cut(s)	395, 526, 701, 1134
DdeI	CTNAG	3 cut(s)	201, 504, 1152
DpnI	GATC	5 cut(s)	435, 516, 766, 872, 961
DpnII	GATC	5 cut(s)	433, 514, 764, 870, 959
EaeI	YGGCCR	2 cut(s)	15, 837
Eco130I	CCWWGG	3 cut(s)	459, 966, 1133
Eco31I	GGTCTC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	105, 201
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	3 cut(s)	459, 966, 1133
ErhI	CCWWGG	3 cut(s)	459, 966, 1133
FaeI	CATG	4 cut(s)	398, 529, 704, 1137
FatI	CATG	4 cut(s)	394, 525, 700, 1133
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	4 cut(s)	569, 795, 949, 1012
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	17, 839
HapII	CCGG	2 cut(s)	40, 1148
Hin1II	CATG	4 cut(s)	398, 529, 704, 1137
HincII	GTYRAC	3 cut(s)	687, 783, 1039
HindII	GTYRAC	3 cut(s)	687, 783, 1039
HindIII	AAGCTT	3 cut(s)	152, 449, 496
HinfI	GANTC	4 cut(s)	194, 203, 251, 385
HpaI	GTTAAC	2 cut(s)	687, 783
HpaII	CCGG	2 cut(s)	40, 1148
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	5 cut(s)	687, 783, 805, 1039, 1115
Hpy188I	TCNGA	8 cut(s)	193, 250, 256, 267, 304, 415, 813, 949
Hpy188III	TCNNGA	2 cut(s)	638, 923
Hpy8I	GTNNAC	5 cut(s)	687, 783, 805, 1039, 1115
HpyAV	CCTTC	3 cut(s)	129, 226, 906
HpyCH4III	ACNGT	2 cut(s)	955, 1036
HpyCH4IV	ACGT	1 cut(s)	1009
HpyCH4V	TGCA	5 cut(s)	244, 479, 579, 1003, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 576
HpyF3I	CTNAG	3 cut(s)	201, 504, 1152
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	4 cut(s)	398, 529, 704, 1137
KspAI	GTTAAC	2 cut(s)	687, 783
Kzo9I	GATC	5 cut(s)	433, 514, 764, 870, 959
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	488, 990
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	3 cut(s)	331, 343, 940
MalI	GATC	5 cut(s)	435, 516, 766, 872, 961
MboI	GATC	5 cut(s)	433, 514, 764, 870, 959
MboII	GAAGA	3 cut(s)	541, 667, 1071
MfeI	CAATTG	1 cut(s)	833
MlsI	TGGCCA	2 cut(s)	17, 839
MluNI	TGGCCA	2 cut(s)	17, 839
MlyI	GAGTC	3 cut(s)	188, 212, 394
MmeI	TCCRAC	2 cut(s)	472, 960
MnlI	CCTC	4 cut(s)	135, 354, 895, 1045
Mox20I	TGGCCA	2 cut(s)	17, 839
MscI	TGGCCA	2 cut(s)	17, 839
MseI	TTAA	4 cut(s)	327, 686, 782, 1014
MslI	CAYNNNNRTG	2 cut(s)	399, 530
Msp20I	TGGCCA	2 cut(s)	17, 839
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	40, 1148
MspR9I	CCNGG	2 cut(s)	8, 40
MunI	CAATTG	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	151, 576
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	1133
NdeII	GATC	5 cut(s)	433, 514, 764, 870, 959
NlaIII	CATG	4 cut(s)	398, 529, 704, 1137
NlaIV	GGNNCC	1 cut(s)	1146
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	3 cut(s)	188, 211, 393
PpsI	GAGTC	3 cut(s)	188, 211, 393
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	1146
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	197, 470
PvuII	CAGCTG	1 cut(s)	623
RseI	CAYNNNNRTG	2 cut(s)	399, 530
SaqAI	TTAA	4 cut(s)	327, 686, 782, 1014
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	433, 514, 764, 870, 959
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	188, 212, 394
ScrFI	CCNGG	2 cut(s)	8, 40
SfaNI	GCATC	2 cut(s)	488, 990
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	399, 530
SsiI	CCGC	2 cut(s)	629, 746
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	6, 38
StyI	CCWWGG	3 cut(s)	459, 966, 1133
TaaI	ACNGT	2 cut(s)	955, 1036
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	2 cut(s)	206, 287
TaqII	GACCGA	1 cut(s)	863
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	327, 686, 782, 1014
Tru9I	TTAA	4 cut(s)	327, 686, 782, 1014
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	273, 542, 548, 717
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	261, 508, 814
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.