Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016538

Physical Location & Seq

Genomic Coordinates Forward (+)

10508585 .. 10510816

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGATGGACCTGGAGGTAGCGAAAAAGGGTTTTGATTATGCCCAGAAAAGGAAGAAGTGGCTTTTTGTAATGGCTGCTTTGGGCTTCTCTGGTTATGGAGCTTACAGGGTTTATCACTTGCCTTCTGTTTCTCGAAAAAGAAAGAGGCTTTTGAAGCTTTTAGGAGCTTTAGTTTCTGTAGCTGAAGTAGTTTCGGACTCTGCTGAGTCGATTGGAGTTGTGTCTAAAGATTTAAAGGACTTTCTTCAATCTGATTTTGATGAAATTCCAAATGGTTTGAAGCAAGTTTCGAAGATTTGTAGGTCGGATGAGTTTTCGGGGTCTGTTGTTAAGGTCACACAAGCTGTAACATTGGGAGTTTTGAGGGGTTATCAAGCACAGGCTAAGAGTCAGAGTATTGGTGGTGATGGAGTTTCTAGTAATACAGGCTTTATGGATCAAGTTATGGATAAGCTGTTTACCAAGGCAGGGACTGGTTTTGTATCTGTTGTTGTTGGGAGCTTTGCTAAGAATCTGGTGTTAGCTTTCTTTTCGGATGAGCAGTCTGGTGCAGGATCAAATTCGACTGGTTCTCCAAGGAAGGATCAATTTGGTATGAAGATGAATGATGTTCCAAGATGGGTGGATGTGGCTTGTAGCGAAAAGTGCAGAGACCTGATTGCTGATTGTATCCAGCTATTTGTGAGCACAGCTGTTGCGGTTTATCTTGACAAGACTATGCACATCAACACGTATGATGATATCTTCTCTGGGTTAACCAACCCCAAGCATGAAGCGAAAGTAAAAGATATGATGTTATCAGTCTGTAATGGCGCGGTTGAAACTCTGGTTAGATCATCTCATCAAGTGTTGACAAGTTCGAAATCCAATGTGAACCATCCGAATTTGAGTTCAAGTTCTCATTTGGCTTTTGATGATGGGAGAAAAGACAGTGGGTGGATCGGTCAAGTATCCTCTACTCTGGCAGTTCCAAGCAATAGAAGGTTTGTTCTTGACTTGACCGGACGGGTTACATCTGAAACAGTTAGATCTTCCTTGGAGTTCTTGATGGAGAGACTATTTGATGGGATGCGGAGACGTGTTAATTCTGCTCGTGTGGAAACTGTGGACAAGGGTGTTGAGGTTGTGAGATATGCTGTTGCAAAGTCTTCCGTTATTGCCACTATATGTCTATCTTTGTGTTTACACATAATTGATAGTCCATGGCTGTTGGCTCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

44.42

Weight (kDa)

9.02

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49790
fragaria_vesca	FvH4_1g18080
malus_domestica	MD02G1189000.v1.1
prunus_persica	Prupe.6G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108551
rosa_laevigata	RLG00000017678
rosa_multiflora	Rmu_sc0007574.1_g000007
rosa_roxburghii	Rroxscaffold_2G00135030
rosa_rugosa	Rorug02G0154400
rosa_samantha	Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana	Rw2G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	815
AciI	CCGC	3 cut(s)	698, 815, 1072
AclWI	GGATC	4 cut(s)	444, 562, 591, 947
AcsI	RAATTY	3 cut(s)	264, 559, 883
AcuI	CTGAAG	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	48, 468
AflIII	ACRYGT	2 cut(s)	729, 1078
AgsI	TTSAA	5 cut(s)	154, 248, 280, 821, 894
AjiI	CACGTC	1 cut(s)	1079
AjnI	CCWGG	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	689
Alw26I	GTCTC	3 cut(s)	645, 1048, 1069
AlwI	GGATC	4 cut(s)	444, 562, 591, 947
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	3 cut(s)	264, 559, 883
AspLEI	GCGC	1 cut(s)	815
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	416
AsuII	TTCGAA	2 cut(s)	290, 860
AvaII	GGWCC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	1092
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	6 cut(s)	401, 612, 885, 911, 1042, 1058
BciT130I	CCWGG	1 cut(s)	11
BciVI	GTATCC	2 cut(s)	680, 961
BcoDI	GTCTC	3 cut(s)	645, 1048, 1069
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	2 cut(s)	680, 961
BglII	AGATCT	1 cut(s)	1028
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	7
BmgBI	CACGTC	1 cut(s)	1079
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	1215
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	1059
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	1 cut(s)	32
Bpu14I	TTCGAA	2 cut(s)	290, 860
BsaAI	YACGTR	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	4 cut(s)	462, 575, 1035, 1202
BsaWI	WCCGGW	1 cut(s)	1001
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 556, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 468
Bse1I	ACTGG	2 cut(s)	478, 571
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	4 cut(s)	462, 575, 1035, 1202
BseGI	GGATG	5 cut(s)	313, 541, 631, 877, 1074
BseLI	CCNNNNNNNGG	2 cut(s)	48, 468
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	478, 571
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	2 cut(s)	570, 667
Bsh1236I	CGCG	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	2 cut(s)	1002, 1217
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	48, 468
BsmAI	GTCTC	3 cut(s)	645, 1048, 1069
BsmBI	CGTCTC	1 cut(s)	1069
BsmFI	GGGAC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	645
Bsp119I	TTCGAA	2 cut(s)	290, 860
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
Bsp19I	CCATGG	1 cut(s)	1202
BspACI	CCGC	3 cut(s)	698, 815, 1072
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	815
BspLI	GGNNCC	1 cut(s)	1215
BspPI	GGATC	4 cut(s)	444, 562, 591, 947
BspT104I	TTCGAA	2 cut(s)	290, 860
BspTNI	GGTCTC	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	478, 571
BssECI	CCNNGG	4 cut(s)	462, 575, 1035, 1202
BssMI	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
BssSI	CACGAG	1 cut(s)	1092
BssT1I	CCWWGG	4 cut(s)	462, 575, 1035, 1202
Bst2BI	CACGAG	1 cut(s)	1092
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	932, 1024, 1105
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	2 cut(s)	290, 860
BstDEI	CTNAG	4 cut(s)	204, 384, 507, 1221
BstDSI	CCRYGG	1 cut(s)	1202
BstF5I	GGATG	5 cut(s)	313, 541, 631, 877, 1074
BstFNI	CGCG	1 cut(s)	815
BstHHI	GCGC	1 cut(s)	815
BstKTI	GATC	6 cut(s)	439, 557, 586, 836, 942, 1031
BstMAI	GTCTC	3 cut(s)	645, 1048, 1069
BstMBI	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 645
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	1028
BstYI	RGATCY	1 cut(s)	1028
BsuI	GTATCC	2 cut(s)	680, 961
BtgI	CCRYGG	1 cut(s)	1202
BtrI	CACGTC	1 cut(s)	1079
BtsCI	GGATG	5 cut(s)	313, 541, 631, 877, 1074
BtsIMutI	CAGTG	1 cut(s)	937
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	815
Cfr13I	GGNCC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	2 cut(s)	770, 1203
DdeI	CTNAG	4 cut(s)	204, 384, 507, 1221
DpnI	GATC	6 cut(s)	438, 556, 585, 835, 941, 1030
DpnII	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
DraI	TTTAAA	1 cut(s)	234
Eco130I	CCWWGG	4 cut(s)	462, 575, 1035, 1202
Eco31I	GGTCTC	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	4 cut(s)	462, 575, 1035, 1202
ErhI	CCWWGG	4 cut(s)	462, 575, 1035, 1202
Esp3I	CGTCTC	1 cut(s)	1069
FaeI	CATG	2 cut(s)	773, 1206
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	769, 1202
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	5 cut(s)	320, 548, 638, 864, 1081
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	814
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	32
HapII	CCGG	2 cut(s)	1002, 1217
HhaI	GCGC	1 cut(s)	815
Hin1II	CATG	2 cut(s)	773, 1206
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HincII	GTYRAC	2 cut(s)	756, 852
HindII	GTYRAC	2 cut(s)	756, 852
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	197, 206, 388, 511
HpaI	GTTAAC	1 cut(s)	756
HpaII	CCGG	2 cut(s)	1002, 1217
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	6 cut(s)	459, 756, 852, 874, 1108, 1184
Hpy188I	TCNGA	7 cut(s)	196, 253, 307, 393, 535, 882, 1018
Hpy188III	TCNNGA	4 cut(s)	132, 707, 992, 1045
Hpy8I	GTNNAC	6 cut(s)	459, 756, 852, 874, 1108, 1184
HpyAV	CCTTC	3 cut(s)	132, 574, 975
HpyCH4III	ACNGT	3 cut(s)	932, 1024, 1105
HpyCH4IV	ACGT	2 cut(s)	731, 1078
HpyCH4V	TGCA	4 cut(s)	551, 648, 721, 1142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 645
HpyF3I	CTNAG	4 cut(s)	204, 384, 507, 1221
HpySE526I	ACGT	2 cut(s)	731, 1078
Hsp92II	CATG	2 cut(s)	773, 1206
HspAI	GCGC	1 cut(s)	813
KspAI	GTTAAC	1 cut(s)	756
Kzo9I	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
LmnI	GCTCC	4 cut(s)	98, 164, 498, 1219
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	1059
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	2 cut(s)	731, 1078
MaeIII	GTNAC	3 cut(s)	334, 346, 1009
MalI	GATC	6 cut(s)	438, 556, 585, 835, 941, 1030
MboI	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
MboII	GAAGA	7 cut(s)	64, 236, 304, 610, 736, 1023, 1140
MflI	RGATCY	1 cut(s)	1028
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	6 cut(s)	264, 559, 587, 883, 1084, 1191
MlyI	GAGTC	3 cut(s)	191, 215, 397
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	7, 138, 357, 964, 1114
MseI	TTAA	4 cut(s)	233, 330, 755, 1083
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	2 cut(s)	1002, 1217
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	2 cut(s)	154, 645
NcoI	CCATGG	1 cut(s)	1202
NdeII	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
NlaIII	CATG	2 cut(s)	773, 1206
NlaIV	GGNNCC	1 cut(s)	1215
NmuCI	GTSAC	1 cut(s)	334
NspV	TTCGAA	2 cut(s)	290, 860
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	3 cut(s)	191, 214, 396
PpsI	GAGTC	3 cut(s)	191, 214, 396
Ppu21I	YACGTR	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	1215
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	692
SaqAI	TTAA	4 cut(s)	233, 330, 755, 1083
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	3 cut(s)	191, 215, 397
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	689
SfaNI	GCATC	1 cut(s)	1059
SfcI	CTRYAG	1 cut(s)	177
SfuI	TTCGAA	2 cut(s)	290, 860
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	6 cut(s)	264, 559, 587, 883, 1084, 1191
SsiI	CCGC	3 cut(s)	698, 815, 1072
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	4 cut(s)	462, 575, 1035, 1202
TaaI	ACNGT	3 cut(s)	932, 1024, 1105
TaiI	ACGT	2 cut(s)	734, 1081
TaqI	TCGA	5 cut(s)	133, 209, 290, 563, 860
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	6 cut(s)	264, 559, 587, 883, 1084, 1191
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	4 cut(s)	233, 330, 755, 1083
Tru9I	TTAA	4 cut(s)	233, 330, 755, 1083
TscAI	CASTG	1 cut(s)	937
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	276, 611, 617, 786
TspGWI	ACGGA	1 cut(s)	1141
TspRI	CASTG	1 cut(s)	937
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	3 cut(s)	264, 559, 883
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.