Prupe.6G217700_v2.0.a1

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016538
Physical Location & Seq
Reverse (-)
22454316 .. 22456930
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G217700.1

Sequence Viewer

Length: 1347 bp
ATGGACCATCAATTGGCGAAAAAGGGTTTTGATTATGCCCGGAAAAGGAAGAAATGGCTCTTTGTAGCTGCCGCTTTAGGCTTCTCTGGTTATGGCGTGTACAGGGTTTATAACTTGCCTTCAGTATCCCAAAAAAGAAAAAGAATTTCAAAGCTTTTAGGAGCTTTAGTTTCTATAGCTGAAGTAGTTTCAGACTCTGCTGAGTCAATTGGAGTTGTCTCTAAGGATTTGAGGGACTTTCTGAAATCTGATTCTGACAAAATTCCAAATAGCTTAAAGCAAGTTTCCAAAATCACAAGGTCGGGTGAGTTTTCAGAATCTGTTGTTAAGCTCACACAGGCTGTGACTTTGGGAGTTTTGCTGGGTTATCGATCGGAGGCAAGGAATGATGGTGACAATGGAATTTCTAGTAATTCAAGCTTTACAGACCAGGTTATGGACAAGCTTTTTACCAACGCCGGGTCTGGTTTTGTTTCAGTTGTTGTTGGAAGCTTCGCTAGGAATTTGGTATTAGCTTTTTATTCAGATGAGAAGTCTGGTGGAGGATCTAATTCAAACAATTCCCCAAGTATGGACCATTTTGTTTCAGAAACAAATTCTGTTCCAACATGGGTGGATGTGGTTTGTGACAAAAAGTGCAGAGACCTCATTGGTGATTGTATCCAGTTATTTGTAAGCACAGCTGTTGCTGTTTATCTTGACAAGACTGTGAATATCAACACCTATGATGACATCTTCTCTGGGTTAACTAACCCCAAGCATGAAACAAAAGTGAGAGACATGTTGTCATCTGTATGTAATGGCGCGGTGGAAACTCTTATCAGAACATCTCACCAAGTGTTGGCAAATTCAACTTCAAAGGCCAATCCTTCAAATTTGAATTCGAGTTCCTATCTGGCAATTGATGAAAGCCGAACTCCAGCTCGAGATGAGGGCTTCAGCGAAAAGGCATTATCGATGCATTCAAAGGCAACAAATGTGGATGATGAGACGAAAGACAGTGGTTGGGTTGGAAAAGTGTCCTCTACTTTGGCAGTGCCAAGCAATAGGAGGTTTGTTCTTGATGTGACTGGGAGGGTTGCATCTGAAACCGTCAGATCATTCTTGGAGTTTTCGTCGGAGAAACTATTTGATGGGATGAAAGGATATGCTAATTCTGTTCGTGAGGAAACTGTGGACAAGGGTTTTGGGATAGTGAGATATGCTAATTCTGTTCGTGAGGAAACTGTGGACAAGGGTTTTGGGATAGTGAGATATGCTGTTGGAAAGTCCTCTGTCATTGCTACTGTATGGCTATCGTTGTGTTTACACATAATGGACAGCCCATGGGCTTTGGTGCCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

48.78

Weight (kDa)

8.4

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016538)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49790
fragaria_vesca FvH4_1g18080
malus_domestica MD02G1189000.v1.1
prunus_persica Prupe.6G217700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108551
rosa_laevigata RLG00000017678
rosa_multiflora Rmu_sc0007574.1_g000007
rosa_roxburghii Rroxscaffold_2G00135030
rosa_rugosa Rorug02G0154400
rosa_samantha Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana Rw2G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 1336
AccB7I CCANNNNNTGG 3 cut(s) 13, 436, 841
AccII CGCG 1 cut(s) 806
AciI CCGC 2 cut(s) 72, 806
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 8 cut(s) 144, 261, 402, 502, 595, 847, 874, 880
AcuI CTGAAG 3 cut(s) 105, 201, 922
AdeI CACNNNGTG 1 cut(s) 838
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 6 cut(s) 13, 45, 436, 459, 571, 841
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 8 cut(s) 150, 417, 555, 852, 858, 873, 880, 966
AhdI GACNNNNNGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 429
Alw26I GTCTC 4 cut(s) 223, 636, 771, 983
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 2 cut(s) 197, 320
Ama87I CYCGRG 1 cut(s) 924
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 8 cut(s) 144, 261, 402, 502, 595, 847, 874, 880
ArsI GACNNNNNNTTYG 4 cut(s) 1169, 1201, 1223, 1255
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 2 cut(s) 4, 574
AsuC2I CCSGG 2 cut(s) 40, 460
AsuHPI GGTGA 4 cut(s) 317, 404, 665, 824
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 2 cut(s) 4, 574
BanI GGYRCC 1 cut(s) 1336
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 15, 383, 1127
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 2 cut(s) 136, 671
BcnI CCSGG 2 cut(s) 40, 460
BcoDI GTCTC 4 cut(s) 223, 636, 771, 983
BfaI CTAG 2 cut(s) 408, 498
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 2 cut(s) 136, 671
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme1390I CCNGG 3 cut(s) 40, 431, 460
Bme18I GGWCC 2 cut(s) 4, 574
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 2 cut(s) 4, 574
BmiI GGNNCC 1 cut(s) 1338
BmrFI CCNGG 3 cut(s) 40, 431, 460
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 2 cut(s) 948, 1091
BmuI ACTGGG 1 cut(s) 1080
BpmI CTGGAG 1 cut(s) 903
BpuMI CCSGG 2 cut(s) 40, 460
Bsa29I ATCGAT 2 cut(s) 370, 956
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 1325
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 1100, 1130
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 45, 436, 459, 571, 841
Bse1I ACTGG 2 cut(s) 664, 1075
Bse3DI GCAATG 1 cut(s) 1278
BseBI CCWGG 1 cut(s) 431
BseCI ATCGAT 2 cut(s) 370, 956
BseDI CCNNGG 1 cut(s) 1325
BseGI GGATG 3 cut(s) 622, 988, 1143
BseLI CCNNNNNNNGG 6 cut(s) 13, 45, 436, 459, 571, 841
BseMI GCAATG 1 cut(s) 1278
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 664, 1075
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 806
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 863
BshNI GGYRCC 1 cut(s) 1336
BshVI ATCGAT 2 cut(s) 370, 956
BsiEI CGRYCG 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 2 cut(s) 40, 459
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 6 cut(s) 13, 45, 436, 459, 571, 841
BsmAI GTCTC 4 cut(s) 223, 636, 771, 983
BsmBI CGTCTC 1 cut(s) 983
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 1 cut(s) 863
Bso31I GGTCTC 1 cut(s) 636
BsoBI CYCGRG 1 cut(s) 924
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 3 cut(s) 371, 545, 1097
Bsp19I CCATGG 1 cut(s) 1325
BspACI CCGC 2 cut(s) 72, 806
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 1 cut(s) 193
BspDI ATCGAT 2 cut(s) 370, 956
BspFNI CGCG 1 cut(s) 806
BspLI GGNNCC 1 cut(s) 1338
BspPI GGATC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 1336
BspTNI GGTCTC 1 cut(s) 636
BsrDI GCAATG 1 cut(s) 1278
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 664, 1075
BssECI CCNNGG 1 cut(s) 1325
BssMI GATC 3 cut(s) 371, 545, 1097
BssT1I CCWWGG 1 cut(s) 1325
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 6 cut(s) 709, 1001, 1093, 1174, 1228, 1288
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 1341
BstDEI CTNAG 3 cut(s) 201, 222, 1344
BstDSI CCRYGG 1 cut(s) 1325
BstF5I GGATG 3 cut(s) 622, 988, 1143
BstFNI CGCG 1 cut(s) 806
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 3 cut(s) 374, 548, 1100
BstMAI GTCTC 4 cut(s) 223, 636, 771, 983
BstMBI GATC 3 cut(s) 371, 545, 1097
BstMCI CGRYCG 1 cut(s) 374
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 3 cut(s) 38, 429, 458
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
Bsu15I ATCGAT 2 cut(s) 370, 956
BsuI GTATCC 2 cut(s) 136, 671
BsuRI GGCC 1 cut(s) 863
BsuTUI ATCGAT 2 cut(s) 370, 956
BtgI CCRYGG 1 cut(s) 1325
BtsCI GGATG 3 cut(s) 622, 988, 1143
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 2 cut(s) 1006, 1041
Cac8I GCNNGC 1 cut(s) 1341
CaiI CAGNNNCTG 2 cut(s) 197, 320
CfoI GCGC 1 cut(s) 806
Cfr13I GGNCC 2 cut(s) 4, 574
ClaI ATCGAT 2 cut(s) 370, 956
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 100
CspCI CAANNNNNGTGG 4 cut(s) 594, 629, 960, 995
CviAII CATG 4 cut(s) 609, 761, 781, 1326
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 201, 222, 1344
DpnI GATC 3 cut(s) 373, 547, 1099
DpnII GATC 3 cut(s) 371, 545, 1097
DraIII CACNNNGTG 1 cut(s) 838
DriI GACNNNNNGTC 1 cut(s) 784
Eam1105I GACNNNNNGTC 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 1325
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 4, 574
Eco57I CTGAAG 3 cut(s) 105, 201, 922
Eco88I CYCGRG 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 1325
EcoT22I ATGCAT 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 1325
Esp3I CGTCTC 1 cut(s) 983
FaeI CATG 4 cut(s) 612, 764, 784, 1329
FaqI GGGAC 1 cut(s) 248
FatI CATG 4 cut(s) 608, 760, 780, 1325
Fnu4HI GCNGC 2 cut(s) 69, 72
FokI GGATG 3 cut(s) 629, 995, 1150
Fsp4HI GCNGC 2 cut(s) 69, 72
FspBI CTAG 2 cut(s) 408, 498
GlaI GCGC 1 cut(s) 805
GluI GCNGC 2 cut(s) 69, 72
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 1 cut(s) 863
HapII CCGG 2 cut(s) 40, 459
HhaI GCGC 1 cut(s) 806
Hin1II CATG 4 cut(s) 612, 764, 784, 1329
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HindIII AAGCTT 4 cut(s) 152, 418, 443, 490
HinfI GANTC 4 cut(s) 194, 203, 251, 317
HpaI GTTAAC 1 cut(s) 747
HpaII CCGG 2 cut(s) 40, 459
HphI GGTGA 4 cut(s) 317, 404, 665, 824
Hpy166II GTNNAC 5 cut(s) 100, 747, 1177, 1231, 1307
Hpy188III TCNNGA 5 cut(s) 698, 926, 1061, 1163, 1217
Hpy8I GTNNAC 5 cut(s) 100, 747, 1177, 1231, 1307
Hpy99I CGWCG 1 cut(s) 1120
HpyAV CCTTC 2 cut(s) 129, 879
HpyCH4III ACNGT 6 cut(s) 709, 1001, 1093, 1174, 1228, 1288
HpyCH4V TGCA 3 cut(s) 639, 961, 1082
HpyF3I CTNAG 3 cut(s) 201, 222, 1344
Hsp92II CATG 4 cut(s) 612, 764, 784, 1329
HspAI GCGC 1 cut(s) 804
KspAI GTTAAC 1 cut(s) 747
Kzo9I GATC 3 cut(s) 371, 545, 1097
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 948, 1091
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 2 cut(s) 408, 498
MaeIII GTNAC 4 cut(s) 343, 392, 626, 1066
MalI GATC 3 cut(s) 373, 547, 1099
MboI GATC 3 cut(s) 371, 545, 1097
MboII GAAGA 2 cut(s) 61, 727
MfeI CAATTG 3 cut(s) 11, 207, 900
MflI RGATCY 1 cut(s) 545
MlyI GAGTC 2 cut(s) 188, 212
MmeI TCCRAC 5 cut(s) 466, 629, 991, 1098, 1243
Mph1103I ATGCAT 1 cut(s) 963
MseI TTAA 3 cut(s) 275, 327, 746
MslI CAYNNNNRTG 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 40, 459
MspR9I CCNGG 3 cut(s) 40, 431, 460
MunI CAATTG 3 cut(s) 11, 207, 900
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 1 cut(s) 806
NciI CCSGG 2 cut(s) 40, 460
NcoI CCATGG 1 cut(s) 1325
NdeII GATC 3 cut(s) 371, 545, 1097
NlaIII CATG 4 cut(s) 612, 764, 784, 1329
NlaIV GGNNCC 1 cut(s) 1338
NmuCI GTSAC 4 cut(s) 343, 392, 626, 1066
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 1 cut(s) 784
PaeR7I CTCGAG 1 cut(s) 924
PciI ACATGT 1 cut(s) 780
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 2 cut(s) 251, 317
PflMI CCANNNNNTGG 3 cut(s) 13, 436, 841
PkrI GCNGC 2 cut(s) 70, 73
Ple19I CGATCG 1 cut(s) 374
PleI GAGTC 2 cut(s) 188, 211
PpsI GAGTC 2 cut(s) 188, 211
PscI ACATGT 1 cut(s) 780
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 1338
PspPI GGNCC 2 cut(s) 4, 574
PstNI CAGNNNCTG 2 cut(s) 197, 320
PsuI RGATCY 1 cut(s) 545
PvuI CGATCG 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 793
SaqAI TTAA 3 cut(s) 275, 327, 746
SatI GCNGC 2 cut(s) 69, 72
Sau3AI GATC 3 cut(s) 371, 545, 1097
Sau96I GGNCC 2 cut(s) 4, 574
SchI GAGTC 2 cut(s) 188, 212
ScrFI CCNGG 3 cut(s) 40, 431, 460
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 2 cut(s) 948, 1091
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 924
SinI GGWCC 2 cut(s) 4, 574
SlaI CTCGAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 793
SmlI CTYRAG 1 cut(s) 924
SmoI CTYRAG 1 cut(s) 924
SsiI CCGC 2 cut(s) 72, 806
SspMI CTAG 2 cut(s) 408, 498
StyD4I CCNGG 3 cut(s) 38, 429, 458
StyI CCWWGG 1 cut(s) 1325
TaaI ACNGT 6 cut(s) 709, 1001, 1093, 1174, 1228, 1288
TaqI TCGA 4 cut(s) 370, 884, 925, 956
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 251, 317
Tru1I TTAA 3 cut(s) 275, 327, 746
Tru9I TTAA 3 cut(s) 275, 327, 746
TscAI CASTG 2 cut(s) 1006, 1041
TseFI GTSAC 4 cut(s) 343, 392, 626, 1066
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 4 cut(s) 343, 392, 626, 1066
TspDTI ATGAA 3 cut(s) 777, 921, 1154
TspRI CASTG 2 cut(s) 1006, 1041
Van91I CCANNNNNTGG 3 cut(s) 13, 436, 841
VpaK11BI GGWCC 2 cut(s) 4, 574
XapI RAATTY 8 cut(s) 144, 261, 402, 502, 595, 847, 874, 880
XceI RCATGY 1 cut(s) 784
XhoI CTCGAG 1 cut(s) 924
XspI CTAG 2 cut(s) 408, 498
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.