Rorug02G0154400

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016538
Physical Location & Seq
Reverse (-)
13712079 .. 13714765
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0154400.1

Sequence Viewer

Length: 429 bp
ATGTGGAGGGAAGCATATAAAAGACTGAGGCGGTCATATCCCAAACGACGTAGTTTTGGCTATTTTTTTTTTATGGATTTTAGAGTAGAGGAAGAAGGGAGAGAAGAAGAAGAGGAAAACCATCGGTCCGGGCCTTACTCGAAGTCGGAGCTAGGAGAGTTACTCGAAGTCGGTGCTAGGAGAGCTAGGCCCAAATCCGGAGAAGAAGGCGAGCTCTTCTCCGATGATAATGACTTTGCAAGTCTAGAGGAGTTCCAGGAAGAGTTAAAGGATATTAACCGAGAAGAGCAGATCTCCAGGCTTCACAAAATGCTTGCTCCTCATCTTCTTGGAAGAGGATTGCATTTGCAACTACACCATGGTATTGCGGAAGATATTGAGAAAATGGGGCTTGAATTCAAGTATGAGGATAAGCACAAGAACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

17.02

Weight (kDa)

5.57

Isoelectric Point (pI)

79.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016538)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49790
fragaria_vesca FvH4_1g18080
malus_domestica MD02G1189000.v1.1
prunus_persica Prupe.6G217700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0108551
rosa_laevigata RLG00000017678
rosa_multiflora Rmu_sc0007574.1_g000007
rosa_roxburghii Rroxscaffold_2G00135030
rosa_rugosa Rorug02G0154400
rosa_samantha Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana Rw2G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 2 cut(s) 31, 368
AcsI RAATTY 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 395, 400
AjnI CCWGG 2 cut(s) 255, 296
AluBI AGCT 3 cut(s) 151, 185, 214
AluI AGCT 3 cut(s) 151, 185, 214
Alw21I GWGCWC 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 131, 188
ApoI RAATTY 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 126, 131, 189
AsuC2I CCSGG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 2 cut(s) 257, 298
BcnI CCSGG 1 cut(s) 130
BfaI CTAG 4 cut(s) 152, 177, 186, 245
BglII AGATCT 1 cut(s) 291
Bme1390I CCNGG 3 cut(s) 130, 257, 298
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 126, 131, 189
BmrFI CCNGG 3 cut(s) 130, 257, 298
BplI GAGNNNNNCTC 6 cut(s) 147, 179, 203, 235, 278, 310
BpmI CTGGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 2 cut(s) 257, 298
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 263, 309
BshFI GGCC 2 cut(s) 133, 190
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 129, 198
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 2 cut(s) 133, 190
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 358
BspACI CCGC 2 cut(s) 31, 368
BspANI GGCC 2 cut(s) 133, 190
BspCNI CTCAG 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 197
BspQI GCTCTTC 2 cut(s) 221, 279
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 257, 298
Bst6I CTCTTC 5 cut(s) 105, 221, 255, 279, 328
BstC8I GCNNGC 2 cut(s) 212, 315
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 358
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 257, 298
BstSCI CCNGG 3 cut(s) 128, 255, 296
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 2 cut(s) 133, 190
BtgI CCRYGG 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 212, 315
Cfr13I GGNCC 3 cut(s) 126, 131, 189
CpoI CGGWCCG 1 cut(s) 126
CspI CGGWCCG 1 cut(s) 126
CviAII CATG 1 cut(s) 359
CviJI RGCY 8 cut(s) 60, 133, 151, 185, 190, 214, 301, 391
CviKI_1 RGCY 8 cut(s) 60, 133, 151, 185, 190, 214, 301, 391
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eam1104I CTCTTC 5 cut(s) 105, 221, 255, 279, 328
EarI CTCTTC 5 cut(s) 105, 221, 255, 279, 328
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 255, 296
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 16, 18, 37, 74, 360, 405
FatI CATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 4 cut(s) 152, 177, 186, 245
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 2 cut(s) 133, 190
HapII CCGG 2 cut(s) 129, 198
Hin1II CATG 1 cut(s) 362
HpaII CCGG 2 cut(s) 129, 198
Hpy188I TCNGA 2 cut(s) 148, 223
Hpy188III TCNNGA 2 cut(s) 198, 245
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 89, 200
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 239, 343, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 1 cut(s) 291
LguI GCTCTTC 2 cut(s) 221, 279
LmnI GCTCC 2 cut(s) 148, 322
LpnPI CCDG 6 cut(s) 142, 211, 242, 269, 283, 310
MaeI CTAG 4 cut(s) 152, 177, 186, 245
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 159
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 7 cut(s) 21, 82, 106, 241, 329, 330, 400
MroI TCCGGA 1 cut(s) 197
MseI TTAA 2 cut(s) 266, 276
MspI CCGG 2 cut(s) 129, 198
MspR9I CCNGG 3 cut(s) 130, 257, 298
MvaI CCWGG 2 cut(s) 257, 298
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 358
NdeII GATC 1 cut(s) 291
NlaIII CATG 1 cut(s) 362
PciSI GCTCTTC 2 cut(s) 221, 279
PfoI TCCNGGA 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 255, 296
PspGI CCWGG 2 cut(s) 255, 296
PspPI GGNCC 3 cut(s) 126, 131, 189
PsuI RGATCY 1 cut(s) 291
Rsr2I CGGWCCG 1 cut(s) 126
RsrII CGGWCCG 1 cut(s) 126
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 221, 279
SaqAI TTAA 2 cut(s) 266, 276
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 3 cut(s) 126, 131, 189
ScrFI CCNGG 3 cut(s) 130, 257, 298
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 52, 153, 187, 216
SinI GGWCC 1 cut(s) 126
Sse9I AATT 1 cut(s) 395
SsiI CCGC 2 cut(s) 31, 368
SspMI CTAG 4 cut(s) 152, 177, 186, 245
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 128, 255, 296
StyI CCWWGG 1 cut(s) 358
TaiI ACGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 140, 165
TaqII GACCGA 1 cut(s) 114
TasI AATT 1 cut(s) 395
Tru1I TTAA 2 cut(s) 266, 276
Tru9I TTAA 2 cut(s) 266, 276
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 244
XspI CTAG 4 cut(s) 152, 177, 186, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.