Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016538

Physical Location & Seq

Genomic Coordinates Forward (+)

19917614 .. 19919771

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGACCTGGAATTGGCGAAAAAGGGTTTTGATTATGCCCGGAAAAGGAAGAAGTGGCTGTTTGTAATGGCTGCTTTGGGCTTCTCTGGTTATGGTGCTTATAGGGTTTATTACTTGCCTTCAGTGTGTCAAAAAAGAAAGAGGCTTTTGAAGCTTTTAGGGGCTTTAGTTTCTGTAGCTGAAGTAGTTTCAGACTCTGCTGAGTCGATTGGAGTTGTGTCTAAAGATTTGAAGGAGTTTCTGCAATCTGATTCTGATGAAATTCCGAATAGCTTGAAGCAAGTTTCGAAAATAGCTAGGTCGGATGAGTTTTCGGGGTCTGTTGTTAAGGTCACACAAGCTGTAACCTTGGGAGTATTGAGGGGTTATCAAGCACAAACCAAGAGTCAGAGTCATGGTGGTGATGGAGTTTCTAGTAATTCAGGCTTTATGGATCAAGTTATGGATAAGCTTTTTACCAAGGCAGGGTCTGGTTTTACTTCTGTTATTGTTGGAAGCTTTGCTAAGAATTTGGTATTAGCTTTCTTTTCGGACGAGCAGTCTGGTGGAGGATCAAATTCGAACAGTTTTCCAAGTAAGGATCAATTTGGCATGAAGATGAATGATGTTCCAAGATGGGTGGATGTGGCTTGTAACGAAAAGTGCAGAGACCTAATTGCTGATTGTATCCAGTTATTTGTAAGCACAGCTGTTGCGGTTTATCTTGACAAGACTATGGACATCAACACCTATGATGATATCTTCTCTGGGTTAACTAACCCCAAGCATGAAGTGAAAGTAAAAGATATGATGTTATCAGTCTGTAATGGTGCGGTTGAAACTCTTGTTAGATCATCTCATCAAGTGTTAACAAGTTCAAAATCCAATGTGAACCATCCGAATTTGAGTTCAGGTTCTCAATTGGCCATTGGTGATGGGAGAAAAGAGAGTGGGTGGATCGGTCAAGTATCCTCTACTTTGGCAGTTCCAAGCAATAGAAGGTTTGTTCTTGACTTGACTGGACGGGTTACATCTGAAACAGTTAGATCATCCTTGGATTTTTTGTTGGAGAGACTATTTGATGGGATGCGGAAACGTGTTAATTCTGCTCGTGTGGAAACTGTTGACAGGGGAGTTGAGGTTGTGAGATACGCTGTTGCAAAGTCTTCCGTTATCGCCACTATATGTCTATCTTTGTGTTTACACATAATTGATAGTCCATGGCTATTGGCACCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

44.24

Weight (kDa)

8.92

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49790
fragaria_vesca	FvH4_1g18080
malus_domestica	MD02G1189000.v1.1
prunus_persica	Prupe.6G217700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108551
rosa_laevigata	RLG00000017678
rosa_multiflora	Rmu_sc0007574.1_g000007
rosa_roxburghii	Rroxscaffold_2G00135030
rosa_rugosa	Rorug02G0154400
rosa_samantha	Rh2AG203300 Rh2BG216200 Rh2CG207200 Rh2DG210400
rosa_wichuraiana	Rw2G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1210
AciI	CCGC	3 cut(s)	695, 812, 1069
AclWI	GGATC	4 cut(s)	441, 559, 588, 944
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	4 cut(s)	261, 508, 556, 880
AcuI	CTGAAG	2 cut(s)	105, 201
AfiI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
AflIII	ACRYGT	1 cut(s)	1075
AgsI	TTSAA	5 cut(s)	151, 232, 277, 818, 858
AhdI	GACNNNNNGTC	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	9 cut(s)	154, 179, 273, 296, 341, 451, 498, 521, 689
AluI	AGCT	9 cut(s)	154, 179, 273, 296, 341, 451, 498, 521, 689
Alw26I	GTCTC	2 cut(s)	642, 1045
AlwI	GGATC	4 cut(s)	441, 559, 588, 944
AlwNI	CAGNNNCTG	2 cut(s)	197, 470
AoxI	GGCC	1 cut(s)	903
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	4 cut(s)	261, 508, 556, 880
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	413, 923
AsuII	TTCGAA	2 cut(s)	287, 560
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	1210
BauI	CACGAG	1 cut(s)	1089
BbsI	GAAGAC	1 cut(s)	1137
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	398, 609, 882, 908, 1055
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	2 cut(s)	677, 958
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	642, 1045
BfaI	CTAG	2 cut(s)	297, 414
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	2 cut(s)	677, 958
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	8, 40
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	1212
BmrFI	CCNGG	2 cut(s)	8, 40
BmsI	GCATC	1 cut(s)	1056
BpiI	GAAGAC	1 cut(s)	1137
Bpu14I	TTCGAA	2 cut(s)	287, 560
BpuMI	CCSGG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	4 cut(s)	348, 459, 1032, 1199
BsaXI	ACNNNNNCTCC	2 cut(s)	1104, 1134
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 45, 465
Bse118I	RCCGGY	1 cut(s)	1213
Bse1I	ACTGG	2 cut(s)	670, 1003
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	348, 459, 1032, 1199
BseGI	GGATG	5 cut(s)	310, 628, 874, 1028, 1071
BseLI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	670, 1003
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	905
BshNI	GGYRCC	1 cut(s)	1210
BsiSI	CCGG	2 cut(s)	40, 1214
BslI	CCNNNNNNNGG	3 cut(s)	13, 45, 465
BsmAI	GTCTC	2 cut(s)	642, 1045
BsnI	GGCC	1 cut(s)	905
Bso31I	GGTCTC	1 cut(s)	642
Bsp119I	TTCGAA	2 cut(s)	287, 560
Bsp143I	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
Bsp19I	CCATGG	1 cut(s)	1199
BspACI	CCGC	3 cut(s)	695, 812, 1069
BspANI	GGCC	1 cut(s)	905
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	1212
BspPI	GGATC	4 cut(s)	441, 559, 588, 944
BspT104I	TTCGAA	2 cut(s)	287, 560
BspT107I	GGYRCC	1 cut(s)	1210
BspTNI	GGTCTC	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	1213
BsrI	ACTGG	2 cut(s)	670, 1003
BssAI	RCCGGY	1 cut(s)	1213
BssECI	CCNNGG	4 cut(s)	348, 459, 1032, 1199
BssMI	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
BssSI	CACGAG	1 cut(s)	1089
BssT1I	CCWWGG	4 cut(s)	348, 459, 1032, 1199
Bst2BI	CACGAG	1 cut(s)	1089
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	3 cut(s)	566, 1021, 1102
BstBI	TTCGAA	2 cut(s)	287, 560
BstDEI	CTNAG	3 cut(s)	201, 504, 1218
BstDSI	CCRYGG	1 cut(s)	1199
BstF5I	GGATG	5 cut(s)	310, 628, 874, 1028, 1071
BstKTI	GATC	6 cut(s)	436, 554, 583, 833, 939, 1028
BstMAI	GTCTC	2 cut(s)	642, 1045
BstMBI	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 38
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	1137
BsuI	GTATCC	2 cut(s)	677, 958
BsuRI	GGCC	1 cut(s)	905
BtgI	CCRYGG	1 cut(s)	1199
BtsCI	GGATG	5 cut(s)	310, 628, 874, 1028, 1071
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	2 cut(s)	197, 470
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	4 cut(s)	395, 592, 767, 1200
DdeI	CTNAG	3 cut(s)	201, 504, 1218
DpnI	GATC	6 cut(s)	435, 553, 582, 832, 938, 1027
DpnII	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
DriI	GACNNNNNGTC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	903
Eam1105I	GACNNNNNGTC	1 cut(s)	538
Eco130I	CCWWGG	4 cut(s)	348, 459, 1032, 1199
Eco31I	GGTCTC	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	105, 201
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	4 cut(s)	348, 459, 1032, 1199
ErhI	CCWWGG	4 cut(s)	348, 459, 1032, 1199
FaeI	CATG	4 cut(s)	398, 595, 770, 1203
FatI	CATG	4 cut(s)	394, 591, 766, 1199
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	5 cut(s)	317, 635, 861, 1015, 1078
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	297, 414
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	905
HapII	CCGG	2 cut(s)	40, 1214
Hin1II	CATG	4 cut(s)	398, 595, 770, 1203
HincII	GTYRAC	3 cut(s)	753, 849, 1105
HindII	GTYRAC	3 cut(s)	753, 849, 1105
HindIII	AAGCTT	3 cut(s)	152, 449, 496
HinfI	GANTC	5 cut(s)	194, 203, 251, 385, 391
HpaI	GTTAAC	2 cut(s)	753, 849
HpaII	CCGG	2 cut(s)	40, 1214
HphI	GGTGA	2 cut(s)	413, 923
Hpy166II	GTNNAC	5 cut(s)	753, 849, 871, 1105, 1181
Hpy188I	TCNGA	9 cut(s)	193, 250, 256, 267, 304, 390, 532, 879, 1015
Hpy188III	TCNNGA	2 cut(s)	704, 989
Hpy8I	GTNNAC	5 cut(s)	753, 849, 871, 1105, 1181
HpyAV	CCTTC	3 cut(s)	129, 226, 972
HpyCH4III	ACNGT	3 cut(s)	566, 1021, 1102
HpyCH4IV	ACGT	1 cut(s)	1075
HpyCH4V	TGCA	3 cut(s)	244, 645, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	201, 504, 1218
HpySE526I	ACGT	1 cut(s)	1075
Hsp92II	CATG	4 cut(s)	398, 595, 770, 1203
KspAI	GTTAAC	2 cut(s)	753, 849
Kzo9I	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	1056
MaeI	CTAG	2 cut(s)	297, 414
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	4 cut(s)	331, 343, 632, 1006
MalI	GATC	6 cut(s)	435, 553, 582, 832, 938, 1027
MboI	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
MboII	GAAGA	4 cut(s)	61, 607, 733, 1137
MfeI	CAATTG	1 cut(s)	899
MlsI	TGGCCA	1 cut(s)	905
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	4 cut(s)	188, 212, 394, 400
MmeI	TCCRAC	3 cut(s)	282, 472, 1026
MnlI	CCTC	5 cut(s)	135, 354, 542, 961, 1111
Mox20I	TGGCCA	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	4 cut(s)	327, 752, 848, 1080
MslI	CAYNNNNRTG	2 cut(s)	399, 596
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	2 cut(s)	40, 1214
MspR9I	CCNGG	2 cut(s)	8, 40
MunI	CAATTG	1 cut(s)	899
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	1199
NdeII	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
NlaIII	CATG	4 cut(s)	398, 595, 770, 1203
NlaIV	GGNNCC	1 cut(s)	1212
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	2 cut(s)	287, 560
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	4 cut(s)	188, 211, 393, 399
PpsI	GAGTC	4 cut(s)	188, 211, 393, 399
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	1212
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	197, 470
PvuII	CAGCTG	1 cut(s)	689
RseI	CAYNNNNRTG	2 cut(s)	399, 596
SaqAI	TTAA	4 cut(s)	327, 752, 848, 1080
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	6 cut(s)	433, 551, 580, 830, 936, 1025
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	188, 212, 394, 400
ScrFI	CCNGG	2 cut(s)	8, 40
SfaNI	GCATC	1 cut(s)	1056
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	2 cut(s)	287, 560
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	399, 596
SsiI	CCGC	3 cut(s)	695, 812, 1069
SspMI	CTAG	2 cut(s)	297, 414
StyD4I	CCNGG	2 cut(s)	6, 38
StyI	CCWWGG	4 cut(s)	348, 459, 1032, 1199
TaaI	ACNGT	3 cut(s)	566, 1021, 1102
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	3 cut(s)	206, 287, 560
TaqII	GACCGA	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	327, 752, 848, 1080
Tru9I	TTAA	4 cut(s)	327, 752, 848, 1080
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	273, 608, 614, 783
TspGWI	ACGGA	1 cut(s)	1138
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	4 cut(s)	261, 508, 556, 880
XspI	CTAG	2 cut(s)	297, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.