AT3G49890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013450
Physical Location & Seq
Forward (+)
18499164 .. 18500722
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49890.1

Sequence Viewer

Length: 663 bp
ATGGCTAAACGGGAGTTAAGTGGAGGAGATAGCAGCAGCGAAGATGAAGATCCCAAGTGGAGAGCTGCAATCAATTCGATAGCCACCACCACCGTTTACGGCGCCTCCGCCACGAAACCCGCAGCTACTCAGTCACATAACTATGGAGATTTTCGTCTCAAACCTAAAAAACTAACACATGGGCAAATCAAGGTGAAGAATCTTTTGAATGAAATGGTGGAGAAGACTTTAGACTTTGTTGAAGATCCTGTCAATATTCCTGAGGATAAACCCGAGAATGACTGTGGAGTTCGGTTATTTAAGCGGTGTGCTACTGGCATTGTATTTGATCATGTAGATGAGATTAGAGGACCTAAAAAGAAGCCTAATTTACGCCCTGACAAAGGAGTTGAAGGAAGCTCTAAAGAGTTTAAGAAACGAGTAAAATCAATTGCTGTTGATGGTTCGGATATTTTAACTGCTGCTGTGGAAGCGGCGAAGAAAGCCTCGGCTAGATTAGATGCGAAAGAAGTGGCAGCGAAAGATAAAGCTAAGAAAGAGGAAGAGAGAATCGCAGAGTTGAAGAAAGTAAGAGGAGAAAAATGGTTACCTTCTATTGAAAGGGCAATGAAAAAGGAAATGAAGCGTATCAAACATACCGCATGGAAGTCTGCAATGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.47

Weight (kDa)

9.55

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 5 cut(s) 108, 120, 304, 473, 639
AclWI GGATC 2 cut(s) 44, 239
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 5 cut(s) 208, 242, 392, 562, 599
AluBI AGCT 4 cut(s) 65, 125, 399, 530
AluI AGCT 4 cut(s) 65, 125, 399, 530
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 44, 239
Ama87I CYCGRG 1 cut(s) 272
ApeKI GCWGC 6 cut(s) 33, 36, 65, 122, 461, 515
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 261
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 230
BbvI GCAGC 6 cut(s) 45, 48, 52, 134, 448, 527
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 7 cut(s) 34, 37, 66, 123, 462, 474, 516
BlsI GCNGC 7 cut(s) 35, 38, 67, 124, 463, 475, 517
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 319
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 612, 660
Bse8I GATNNNNATC 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 486
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 2 cut(s) 612, 660
BseMII CTCAG 2 cut(s) 143, 252
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 39, 588
BseXI GCAGC 6 cut(s) 45, 48, 52, 134, 448, 527
BshNI GGYRCC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 3 cut(s) 49, 244, 328
BspACI CCGC 5 cut(s) 108, 120, 304, 473, 639
BspCNI CTCAG 2 cut(s) 142, 253
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 44, 239
BspT107I GGYRCC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 612, 660
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 3 cut(s) 49, 244, 328
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 94, 284
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 129, 261, 531
BstEII GGTNACC 1 cut(s) 585
BstENI CCTNNNNNAGG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 52, 247, 331
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 49, 244, 328
BstMWI GCNNNNNNNGC 2 cut(s) 470, 482
BstPI GGTNACC 1 cut(s) 585
BstV1I GCAGC 6 cut(s) 45, 48, 52, 134, 448, 527
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 2 cut(s) 49, 244
BstYI RGATCY 2 cut(s) 49, 244
Bsu36I CCTNAGG 1 cut(s) 261
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 3 cut(s) 179, 332, 642
CviJI RGCY 9 cut(s) 5, 65, 83, 125, 364, 399, 485, 491, 530
CviKI_1 RGCY 9 cut(s) 5, 65, 83, 125, 364, 399, 485, 491, 530
DdeI CTNAG 3 cut(s) 129, 261, 531
DinI GGCGCC 1 cut(s) 103
DpnI GATC 3 cut(s) 51, 246, 330
DpnII GATC 3 cut(s) 49, 244, 328
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 350
Eco81I CCTNAGG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 272
Eco91I GGTNACC 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 585
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 3 cut(s) 182, 335, 645
FaiI YATR 6 cut(s) 138, 144, 180, 333, 636, 643
FatI CATG 3 cut(s) 178, 331, 641
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 7 cut(s) 34, 37, 66, 123, 462, 474, 516
Fsp4HI GCNGC 7 cut(s) 34, 37, 66, 123, 462, 474, 516
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 103
GluI GCNGC 7 cut(s) 34, 37, 66, 123, 462, 474, 516
HaeII RGCGCY 1 cut(s) 105
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 182, 335, 645
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 2 cut(s) 199, 549
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 260, 660
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 386, 600
HpyCH4III ACNGT 2 cut(s) 94, 284
HpyCH4V TGCA 2 cut(s) 68, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 482
HpyF3I CTNAG 3 cut(s) 129, 261, 531
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 182, 335, 645
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 49, 244, 328
LpnPI CCDG 4 cut(s) 261, 273, 300, 390
Lsp1109I GCAGC 6 cut(s) 45, 48, 52, 134, 448, 527
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 132, 585
MalI GATC 3 cut(s) 51, 246, 330
MboI GATC 3 cut(s) 49, 244, 328
MboII GAAGA 8 cut(s) 53, 59, 208, 235, 254, 490, 554, 574
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 49, 244
MluCI AATT 3 cut(s) 73, 367, 429
Mly113I GGCGCC 1 cut(s) 102
MnlI CCTC 7 cut(s) 17, 115, 256, 341, 496, 532, 566
MseI TTAA 4 cut(s) 17, 300, 411, 455
MslI CAYNNNNRTG 2 cut(s) 141, 336
MunI CAATTG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 470, 482
NarI GGCGCC 1 cut(s) 102
NdeII GATC 3 cut(s) 49, 244, 328
NlaIII CATG 3 cut(s) 182, 335, 645
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 199, 549
PkrI GCNGC 7 cut(s) 35, 38, 67, 124, 463, 475, 517
PluTI GGCGCC 1 cut(s) 105
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 2 cut(s) 49, 244
RseI CAYNNNNRTG 2 cut(s) 141, 336
SaqAI TTAA 4 cut(s) 17, 300, 411, 455
SatI GCNGC 7 cut(s) 34, 37, 66, 123, 462, 474, 516
Sau3AI GATC 3 cut(s) 49, 244, 328
Sau96I GGNCC 1 cut(s) 350
SetI ASST 8 cut(s) 67, 127, 166, 195, 355, 401, 532, 592
SfaNI GCATC 1 cut(s) 490
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 2 cut(s) 141, 336
Sse9I AATT 3 cut(s) 73, 367, 429
SsiI CCGC 5 cut(s) 108, 120, 304, 473, 639
SspDI GGCGCC 1 cut(s) 101
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 94, 284
TaqI TCGA 1 cut(s) 77
TasI AATT 3 cut(s) 73, 367, 429
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 199, 549
Tru1I TTAA 4 cut(s) 17, 300, 411, 455
Tru9I TTAA 4 cut(s) 17, 300, 411, 455
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 6 cut(s) 33, 36, 65, 122, 461, 515
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 4 cut(s) 60, 225, 623, 635
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 381
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.