Rh2BG211500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013450
Physical Location & Seq
Reverse (-)
19845549 .. 19846659
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG211500.1

Sequence Viewer

Length: 618 bp
ATGAGCAGCAGCAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGTTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTCCTCAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGACATCATAGGGAAGTCATTGGAGATAGTGCACAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTCGATCATGTGGACGAACAACCGCCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAATTAATGAGAAATCAAAGAAGTTTAAACAACAAATCCAATCTGTTGCTGTTGATGGGAATGAGATGGTGTCTGAAGCAAGAGATAGATGTCAGAGAGCATTGTCTAGGCTAGAAGCTAAAGAGGCAGCAGCAAAAGAAGCAGCCAAAAGAGAAGAGGAAAGAGTTGCACAACTCAAAAAAATTAGGGGAGAAAGATGGCTACCTTCTATTGCCAGAGAAAGGAAATTCAAAGCCATTAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.84

Weight (kDa)

9.44

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 5 cut(s) 44, 57, 72, 74, 332
AcsI RAATTY 2 cut(s) 351, 593
AcuI CTGAAG 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 175, 588
AgsI TTSAA 2 cut(s) 286, 598
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 4 cut(s) 66, 124, 187, 485
AluI AGCT 4 cut(s) 66, 124, 187, 485
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 337
Alw44I GTGCAC 1 cut(s) 224
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 351, 593
AseI ATTAAT 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 4 cut(s) 29, 416, 427, 558
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 3 cut(s) 336, 474, 479
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 300, 360
BmrFI CCNGG 2 cut(s) 300, 360
BmsI GCATC 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 72, 298
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 588
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 72, 298
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 175, 588
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 4 cut(s) 76, 97, 120, 275
BseSI GKGCMC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 175, 588
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 313
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 5 cut(s) 44, 57, 72, 74, 332
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 72, 298
BssMI GATC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 9 cut(s) 12, 15, 18, 21, 24, 53, 80, 491, 506
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 298, 358
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 74
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 199
Cfr42I CCGCGG 1 cut(s) 75
CviAII CATG 1 cut(s) 317
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraI TTTAAA 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 1 cut(s) 320
FaiI YATR 2 cut(s) 203, 318
FatI CATG 1 cut(s) 316
FokI GGATG 1 cut(s) 206
FspBI CTAG 3 cut(s) 336, 474, 479
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 359
Hin1II CATG 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 226, 322
Hpy188I TCNGA 2 cut(s) 442, 462
Hpy188III TCNNGA 2 cut(s) 134, 239
Hpy8I GTNNAC 2 cut(s) 226, 322
HpyAV CCTTC 2 cut(s) 333, 582
HpyCH4V TGCA 2 cut(s) 226, 536
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 15, 18, 21, 24, 53, 80, 491, 506
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 320
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 7 cut(s) 134, 252, 258, 285, 312, 372, 595
LweI GCATC 1 cut(s) 31
MaeI CTAG 3 cut(s) 336, 474, 479
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 3 cut(s) 44, 347, 533
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 4 cut(s) 351, 369, 549, 593
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 2 cut(s) 372, 393
MspA1I CMGCKG 2 cut(s) 74, 124
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 300, 360
MssI GTTTAAAC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 9 cut(s) 12, 15, 18, 21, 24, 53, 80, 491, 506
NciI CCSGG 1 cut(s) 360
NdeII GATC 1 cut(s) 313
NlaIII CATG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 358
PleI GAGTC 1 cut(s) 131
PmeI GTTTAAAC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 124
SacII CCGCGG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 372, 393
Sau3AI GATC 1 cut(s) 313
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 300, 360
SduI GDGCHC 1 cut(s) 228
SetI ASST 5 cut(s) 68, 126, 189, 487, 574
SfaNI GCATC 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 4 cut(s) 351, 369, 549, 593
SsiI CCGC 5 cut(s) 44, 57, 72, 74, 332
SspMI CTAG 3 cut(s) 336, 474, 479
StyD4I CCNGG 2 cut(s) 298, 358
TaqI TCGA 1 cut(s) 312
TaqII GACCGA 1 cut(s) 361
TasI AATT 4 cut(s) 351, 369, 549, 593
TauI GCSGC 4 cut(s) 47, 59, 74, 77
Tru1I TTAA 2 cut(s) 372, 393
Tru9I TTAA 2 cut(s) 372, 393
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
VneI GTGCAC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 2 cut(s) 351, 593
XspI CTAG 3 cut(s) 336, 474, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.