Rorug02G0149400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013450
Physical Location & Seq
Forward (+)
13134005 .. 13140182
6178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0149400.1

Sequence Viewer

Length: 639 bp
ATGGTAGGCTCTGTTACTTTTGTTGATCCTGCTGTAATCTCTGCTCCATGGTGTGGGACAAGTTTTGTAAGATCCCGTAAGCTAGCAGACCGATTCAAAGGAGCACAAAGTGATCAGATGTTCTTTATCCCTTACAACTCCGGTGATCATTGGATGTTAACGATTGTCCATCCAGTGAAGGAGACGATCTATTTTGTTGACTCATTTTATCAGAGCATAATTGATAGTGAATGGAAACATGTTGTGAATGATGCAATTAATATATTCAATCGGCAAAGGAATAAGCAAGGACGTAAAACTCCACTATGGAAAGTCCTGATGGGTGCTCTAAAACAACCGACAAACAAAGAATGTGGCTATTACATCATGCGCTTTAAGAGGGACCTAATCCTTGAAGATATTCAAGGTGTACTAGCTAAGGCATTAATTTGGTCGAAGATGAGTACAGGGCTTCCTATAGATATCTCTTCATCAATGAAGGGCCAAAGTTATAATTCTTTCTGCAGACTGGATATAGATATTCATCGGAACATTCCTCATGTTCATATACATGAAAAACGGGAAAACAAGGATAGGTGGCATGGTGCTGAAATCCAAGTTGTTATTGAGGGAAATTGGACAACTTACCGTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.66

Weight (kDa)

9.42

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 41 - 130 1.2e-07 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 53
AclWI GGATC 2 cut(s) 20, 66
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 2 cut(s) 411, 445
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 4 cut(s) 97, 268, 395, 404
AluBI AGCT 2 cut(s) 82, 416
AluI AGCT 2 cut(s) 82, 416
Alw21I GWGCWC 2 cut(s) 106, 328
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 20, 66
AoxI GGCC 1 cut(s) 481
AseI ATTAAT 2 cut(s) 258, 425
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 382, 481
AsuHPI GGTGA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 106, 328
BccI CCATC 2 cut(s) 177, 313
BclI TGATCA 2 cut(s) 112, 145
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 83, 413
BfmI CTRYAG 2 cut(s) 456, 502
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 382, 481
BmiI GGNNCC 1 cut(s) 383
BmsI GCATC 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 173, 513
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 159, 169
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 53
BseNI ACTGG 2 cut(s) 173, 513
BshFI GGCC 1 cut(s) 483
BsiHKAI GWGCWC 2 cut(s) 106, 328
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 70, 395
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 70, 395
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 106, 328
Bsp143I GATC 5 cut(s) 25, 71, 112, 145, 186
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 1 cut(s) 506
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 20, 66
BsrI ACTGG 2 cut(s) 173, 513
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 5 cut(s) 25, 71, 112, 145, 186
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 159, 169
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 5 cut(s) 28, 74, 115, 148, 189
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 5 cut(s) 25, 71, 112, 145, 186
BstNSI RCATGY 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 456, 502
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 159, 169
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 2 cut(s) 382, 481
Csp6I GTAC 2 cut(s) 410, 444
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 6 cut(s) 48, 239, 367, 539, 551, 581
CviJI RGCY 6 cut(s) 9, 82, 357, 416, 451, 483
CviKI_1 RGCY 6 cut(s) 9, 82, 357, 416, 451, 483
CviQI GTAC 2 cut(s) 410, 444
DdeI CTNAG 1 cut(s) 417
DpnI GATC 5 cut(s) 27, 73, 114, 147, 188
DpnII GATC 5 cut(s) 25, 71, 112, 145, 186
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 47
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 382
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 6 cut(s) 51, 242, 370, 542, 554, 584
FaqI GGGAC 2 cut(s) 70, 395
FatI CATG 6 cut(s) 47, 238, 366, 538, 550, 580
FbaI TGATCA 2 cut(s) 112, 145
FokI GGATG 2 cut(s) 156, 166
FspBI CTAG 2 cut(s) 83, 413
GlaI GCGC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 483
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 372
Hin1II CATG 6 cut(s) 51, 242, 370, 542, 554, 584
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 2 cut(s) 159, 199
HindII GTYRAC 2 cut(s) 159, 199
HinfI GANTC 2 cut(s) 93, 200
HpaI GTTAAC 1 cut(s) 159
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 159, 199, 410
Hpy188I TCNGA 3 cut(s) 117, 213, 528
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 3 cut(s) 159, 199, 410
HpyAV CCTTC 2 cut(s) 172, 472
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 254, 504
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 6 cut(s) 51, 242, 370, 542, 554, 584
HspAI GCGC 1 cut(s) 370
Ksp22I TGATCA 2 cut(s) 112, 145
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 5 cut(s) 25, 71, 112, 145, 186
LmnI GCTCC 2 cut(s) 49, 101
LpnPI CCDG 6 cut(s) 42, 154, 186, 329, 432, 494
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 83, 413
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 13
MalI GATC 5 cut(s) 27, 73, 114, 147, 188
MboI GATC 5 cut(s) 25, 71, 112, 145, 186
MboII GAAGA 3 cut(s) 407, 448, 459
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 106, 328
MluCI AATT 5 cut(s) 219, 255, 426, 493, 613
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 372, 546, 601
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 4 cut(s) 158, 258, 375, 425
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 1 cut(s) 141
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 25, 71, 112, 145, 186
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 6 cut(s) 51, 242, 370, 542, 554, 584
NlaIV GGNNCC 1 cut(s) 383
NspI RCATGY 1 cut(s) 242
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 53
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 382
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 2 cut(s) 258, 425
PsiI TTATAA 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 382, 481
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 2 cut(s) 411, 445
RsaNI GTAC 2 cut(s) 410, 444
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 4 cut(s) 158, 258, 375, 425
Sau3AI GATC 5 cut(s) 25, 71, 112, 145, 186
Sau96I GGNCC 2 cut(s) 382, 481
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 2 cut(s) 106, 328
SetI ASST 6 cut(s) 84, 295, 387, 409, 418, 578
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 2 cut(s) 456, 502
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 5 cut(s) 219, 255, 426, 493, 613
SspMI CTAG 2 cut(s) 83, 413
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 434
TaqII GACCGA 1 cut(s) 105
TasI AATT 5 cut(s) 219, 255, 426, 493, 613
TatI WGTACW 2 cut(s) 409, 443
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 4 cut(s) 158, 258, 375, 425
Tru9I TTAA 4 cut(s) 158, 258, 375, 425
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 5 cut(s) 459, 491, 512, 533, 567
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 382
VspI ATTAAT 2 cut(s) 258, 425
XceI RCATGY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 83, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.