RLG00000017632

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013450
Physical Location & Seq
Reverse (-)
19319081 .. 19320198
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017632

Sequence Viewer

Length: 612 bp
ATGAGCAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGGTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTCCTAAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGATATTATAGGGAAGTCATTGGAGATAGTGCATAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGTTGAACAACCACCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAATTAATGAGAAATCAAAGAAGTTTAAACAACAAATCCAATCCGTTGCTGTTGATGGGAATGACATAGTGTCTGAAGCAAGAGATAGATGTCAGAGAGCATTGTCTAGGCTAGAAGCTAAAGAGGCAGCAGCAAAAGAAGCAGCCAAAAGAGAGGAGGAAAGAGTTGCACAACTCAAAAAAATTAGGGGAGAAAGATGGCTACCTTCTATTGCCAGAGAAAGGCAGTTCAAAGCCATTAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

9.54

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 38, 51, 66, 68
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 169, 582
AgsI TTSAA 3 cut(s) 280, 320, 592
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 60, 118, 181, 479
AluI AGCT 4 cut(s) 60, 118, 181, 479
Alw26I GTCTC 1 cut(s) 331
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
ApoI RAATTY 1 cut(s) 345
AseI ATTAAT 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 354
BanI GGYRCC 1 cut(s) 74
BbvI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BccI CCATC 3 cut(s) 23, 410, 552
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 3 cut(s) 330, 468, 473
BfuAI ACCTGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 294, 354
BmeRI GACNNNNNGTC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 294, 354
BmsI GCATC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 66, 292
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 582
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 66, 292
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 169, 582
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 4 cut(s) 70, 91, 269, 530
BseXI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 169, 582
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 4 cut(s) 38, 51, 66, 68
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 66, 292
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 292, 352
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 69
CviAII CATG 1 cut(s) 311
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 388
DriI GACNNNNNGTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 1 cut(s) 314
FaiI YATR 4 cut(s) 197, 222, 312, 428
FatI CATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 307
FokI GGATG 1 cut(s) 200
FspBI CTAG 3 cut(s) 330, 468, 473
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 436, 456
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 327, 576
HpyCH4V TGCA 2 cut(s) 220, 530
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 307
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 57, 128, 246, 252, 279, 306, 366, 589
Lsp1109I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 330, 468, 473
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 38, 341
MluCI AATT 3 cut(s) 345, 363, 543
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 2 cut(s) 366, 387
MspA1I CMGCKG 2 cut(s) 68, 118
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 294, 354
MssI GTTTAAAC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 352
PleI GAGTC 1 cut(s) 125
PmeI GTTTAAAC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 118
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 366, 387
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 294, 354
SetI ASST 7 cut(s) 62, 76, 120, 183, 331, 481, 568
SfaNI GCATC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
Sse9I AATT 3 cut(s) 345, 363, 543
SsiI CCGC 4 cut(s) 38, 51, 66, 68
SspMI CTAG 3 cut(s) 330, 468, 473
StyD4I CCNGG 2 cut(s) 292, 352
TaqII GACCGA 1 cut(s) 355
TasI AATT 3 cut(s) 345, 363, 543
TauI GCSGC 4 cut(s) 41, 53, 68, 71
Tru1I TTAA 2 cut(s) 366, 387
Tru9I TTAA 2 cut(s) 366, 387
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
Tsp45I GTSAC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 394
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 345
XspI CTAG 3 cut(s) 330, 468, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.