RchiOBHm_Chr2g0108001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013450
Physical Location & Seq
Reverse (-)
19539558 .. 19541223
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48199

Sequence Viewer

Length: 609 bp
ATGAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGGTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTACCTCCTCAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGACATCATAGGGAAGTCATTGGAGATAGTGCATAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGATGAACAACCATCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAGTTAATGAGAAATCAAAGAAGTTTAAACAACAAATCCAATCCGTTGCTGTTGATGGGAATGAGATAGTGTCTGAAGCAAGAGATAGATGTCAGAGAGCATTGTCTAGGCTAGAAGCTAAAGAGGCAGCAGCAAAAGAAGCAGCCAAAAGAGAAGAGGAAAGAGTTGCACAACTCAAAAAAATTAGGGGAGAAAGATGGCTACCTTCTATTGCCAGACCAAGGCAATTCAAAGCCATTAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.47

Weight (kDa)

9.47

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 35, 48, 63, 65
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 453
AfiI CCNNNNNNNGG 2 cut(s) 166, 579
AgsI TTSAA 2 cut(s) 277, 589
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 57, 115, 178, 476
AluI AGCT 4 cut(s) 57, 115, 178, 476
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 7 cut(s) 6, 9, 12, 15, 485, 488, 500
ApoI RAATTY 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 351
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 7 cut(s) 18, 21, 24, 27, 497, 500, 512
BccI CCATC 4 cut(s) 20, 331, 407, 549
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 3 cut(s) 327, 465, 470
BfuAI ACCTGC 1 cut(s) 59
BlpI GCTNAGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 291, 351
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 291, 351
BmsI GCATC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 63, 289, 578
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 579
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 63, 289, 578
BseGI GGATG 2 cut(s) 190, 319
BseLI CCNNNNNNNGG 2 cut(s) 166, 579
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 4 cut(s) 67, 88, 111, 266
BseXI GCAGC 7 cut(s) 18, 21, 24, 27, 497, 500, 512
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 166, 579
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 58
BspACI CCGC 4 cut(s) 35, 48, 63, 65
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 63, 289, 578
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 507
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 190, 319
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 44, 71, 482, 497
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 349
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 18, 21, 24, 27, 497, 500, 512
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 190, 319
BveI ACCTGC 1 cut(s) 59
Cfr42I CCGCGG 1 cut(s) 66
CviAII CATG 1 cut(s) 308
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 1 cut(s) 311
FaiI YATR 3 cut(s) 194, 219, 309
FatI CATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 304
FokI GGATG 2 cut(s) 197, 326
FspBI CTAG 3 cut(s) 327, 465, 470
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 350
Hin1II CATG 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 433, 453
Hpy188III TCNNGA 3 cut(s) 125, 230, 327
HpyAV CCTTC 2 cut(s) 324, 573
HpyCH4V TGCA 2 cut(s) 217, 527
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 44, 71, 482, 497
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 304
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 54, 125, 243, 249, 276, 303, 363, 586
Lsp1109I GCAGC 7 cut(s) 18, 21, 24, 27, 497, 500, 512
LweI GCATC 1 cut(s) 22
MaeI CTAG 3 cut(s) 327, 465, 470
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 35, 338, 524
MluCI AATT 3 cut(s) 342, 540, 584
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 156
MseI TTAA 2 cut(s) 363, 384
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 291, 351
MssI GTTTAAAC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 44, 71, 482, 497
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 349
PleI GAGTC 1 cut(s) 122
PmeI GTTTAAAC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 312
SacII CCGCGG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 363, 384
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 291, 351
SetI ASST 7 cut(s) 59, 73, 117, 121, 180, 478, 565
SfaNI GCATC 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 342, 540, 584
SsiI CCGC 4 cut(s) 35, 48, 63, 65
SspMI CTAG 3 cut(s) 327, 465, 470
StyD4I CCNGG 2 cut(s) 289, 349
StyI CCWWGG 1 cut(s) 578
TaqII GACCGA 1 cut(s) 352
TasI AATT 3 cut(s) 342, 540, 584
TauI GCSGC 4 cut(s) 38, 50, 65, 68
Tru1I TTAA 2 cut(s) 363, 384
Tru9I TTAA 2 cut(s) 363, 384
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 7 cut(s) 6, 9, 12, 15, 485, 488, 500
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 391
XapI RAATTY 1 cut(s) 342
XbaI TCTAGA 1 cut(s) 326
XspI CTAG 3 cut(s) 327, 465, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.