Rroxscaffold_2G00135740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013450
Physical Location & Seq
Forward (+)
73292160 .. 73293261
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135740.1

Sequence Viewer

Length: 612 bp
ATGAGCAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAACTCAGCCGCGGCAGGTGCTTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTGCTCAAGATTCCGACCACACTAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGATATTATAGGGAAGTCATTGGAGATAGTGCACAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGATGAACAACCACCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAATTAATGAGAAATCAAAGAAGTTTAAACAACAAATCCAATCCGTTGCTGTTGATGGGAATGACGTAGTGTCTGAAGCAAGACATAGATGTCAGACAGCATTGTCTAGGCTAGAAGCTAAAGAGGCAGCAGCAAAAGAAGCAGCCAAAAGAGAAGAGGAAAGAGTTGCACGACTCAAAAAAGTTAGGGGAGAAAGATGGCTACCTTCTATTGCCAGAGAAAGGCAGTTCAAAGCCATTAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.56

Weight (kDa)

9.36

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
AasI GACNNNNNNGTC 2 cut(s) 450, 463
Acc36I ACCTGC 1 cut(s) 62
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 38, 51, 66, 68
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 169, 582
AgsI TTSAA 2 cut(s) 280, 592
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 118, 181, 479
AluI AGCT 3 cut(s) 118, 181, 479
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 331
Alw44I GTGCAC 1 cut(s) 218
AoxI GGCC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
ApoI RAATTY 1 cut(s) 345
AseI ATTAAT 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BccI CCATC 3 cut(s) 23, 410, 552
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 3 cut(s) 330, 468, 473
BfuAI ACCTGC 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 294, 354
BmeRI GACNNNNNGTC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 294, 354
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 66, 292
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 582
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 66, 292
BseGI GGATG 2 cut(s) 193, 322
BseLI CCNNNNNNNGG 2 cut(s) 169, 582
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 91, 269
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 169, 582
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 4 cut(s) 38, 51, 66, 68
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 68
BspMI ACCTGC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 66, 292
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 193, 322
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 292, 352
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 193, 322
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 123
Cfr42I CCGCGG 1 cut(s) 69
CviAII CATG 1 cut(s) 311
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 388
DrdI GACNNNNNNGTC 2 cut(s) 450, 463
DriI GACNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 2 cut(s) 450, 463
Eam1104I CTCTTC 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 1 cut(s) 314
FaiI YATR 3 cut(s) 197, 312, 447
FatI CATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 307
FokI GGATG 2 cut(s) 200, 329
FspBI CTAG 3 cut(s) 330, 468, 473
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 2 cut(s) 131, 534
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 136, 436, 456
Hpy188III TCNNGA 2 cut(s) 128, 233
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 327, 576
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 2 cut(s) 220, 530
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 307
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 9 cut(s) 57, 128, 135, 246, 252, 279, 306, 366, 589
Lsp1109I GCAGC 9 cut(s) 18, 21, 24, 27, 30, 105, 500, 503, 515
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 330, 468, 473
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 38, 341, 527
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 345, 363
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 16, 91, 107, 112, 247, 250, 478, 511
MseI TTAA 3 cut(s) 57, 366, 387
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 68, 118
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 294, 354
MssI GTTTAAAC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 7 cut(s) 12, 15, 18, 47, 74, 485, 500
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 352
PleI GAGTC 1 cut(s) 528
PmeI GTTTAAAC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 528
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 315
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 57, 366, 387
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 294, 354
SduI GDGCHC 1 cut(s) 222
SetI ASST 7 cut(s) 76, 120, 183, 331, 429, 481, 568
SfaNI GCATC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 345, 363
SsiI CCGC 4 cut(s) 38, 51, 66, 68
SspMI CTAG 3 cut(s) 330, 468, 473
StyD4I CCNGG 2 cut(s) 292, 352
TaiI ACGT 1 cut(s) 429
TaqII GACCGA 1 cut(s) 355
TasI AATT 2 cut(s) 345, 363
TauI GCSGC 4 cut(s) 41, 53, 68, 71
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 57, 366, 387
Tru9I TTAA 3 cut(s) 57, 366, 387
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 9 cut(s) 6, 9, 12, 15, 18, 118, 488, 491, 503
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 394
VneI GTGCAC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 345
XspI CTAG 3 cut(s) 330, 468, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.