Rh2AG198600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013450
Physical Location & Seq
Reverse (-)
20043086 .. 20047873
4788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG198600.1

Sequence Viewer

Length: 438 bp
ATGAGCAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGGTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTCCTCAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGACATCATAGGGAAGTCATTGGAGATAGTGCACAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGATGAACAACCACCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAATTAATGAGAAATCAAAGAAGGTCTGTTTGTTTATCGATAAACTCCTGATTGCATCCTATTGGTTTGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.0

Weight (kDa)

6.42

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 38, 51, 66, 68
AcsI RAATTY 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 60, 118, 181
AluI AGCT 3 cut(s) 60, 118, 181
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 331
Alw44I GTGCAC 1 cut(s) 218
AoxI GGCC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 6 cut(s) 6, 9, 12, 15, 18, 118
ApoI RAATTY 1 cut(s) 345
AseI ATTAAT 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 6 cut(s) 18, 21, 24, 27, 30, 105
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 62
BlpI GCTNAGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 294, 354
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 294, 354
BmsI GCATC 2 cut(s) 25, 425
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 66, 292
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 66, 292
BseGI GGATG 3 cut(s) 193, 322, 416
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 4 cut(s) 70, 91, 114, 269
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 6 cut(s) 18, 21, 24, 27, 30, 105
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 4 cut(s) 38, 51, 66, 68
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 66, 292
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 193, 322, 416
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 47, 74
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 292, 352
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 6 cut(s) 18, 21, 24, 27, 30, 105
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 193, 322, 416
BveI ACCTGC 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 399
CviAII CATG 1 cut(s) 311
CviJI RGCY 6 cut(s) 50, 60, 65, 96, 118, 181
CviKI_1 RGCY 6 cut(s) 50, 60, 65, 96, 118, 181
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 1 cut(s) 314
FaiI YATR 2 cut(s) 197, 312
FatI CATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 307
FokI GGATG 3 cut(s) 200, 329, 403
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 128, 233, 409
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 327, 376
HpyCH4V TGCA 2 cut(s) 220, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 47, 74
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 307
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 8 cut(s) 57, 128, 246, 252, 279, 306, 366, 422
Lsp1109I GCAGC 6 cut(s) 18, 21, 24, 27, 30, 105
LweI GCATC 2 cut(s) 25, 425
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 38, 341
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 345, 363
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 9 cut(s) 16, 88, 91, 107, 112, 132, 135, 247, 250
MseI TTAA 2 cut(s) 366, 436
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 68, 118
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 294, 354
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 47, 74
NciI CCSGG 1 cut(s) 354
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 352
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 315
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 366, 436
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 294, 354
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 62, 76, 120, 183, 331, 387
SfaNI GCATC 2 cut(s) 25, 425
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 345, 363
SsiI CCGC 4 cut(s) 38, 51, 66, 68
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 292, 352
TaqI TCGA 1 cut(s) 399
TaqII GACCGA 1 cut(s) 355
TasI AATT 2 cut(s) 345, 363
TauI GCSGC 4 cut(s) 41, 53, 68, 71
Tru1I TTAA 2 cut(s) 366, 436
Tru9I TTAA 2 cut(s) 366, 436
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 6 cut(s) 6, 9, 12, 15, 18, 118
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 333
VneI GTGCAC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 345
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.