Rw2G015760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013450
Physical Location & Seq
Reverse (-)
18383602 .. 18385012
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015760.1

Sequence Viewer

Length: 435 bp
ATGAGCAGCAGCAGCAGCGAGGAAGATGGAGATGCGGCGTGGAAAGCCGCCATTAGCTCAGCCGCGGCAGGTGCCTCCTCTTACATCAACGGCCTCTCCTCCAAACCAAACCAGCTGCCTCCTCAAGACTCCAACCACACCAAACTCCCCAAGCACTACCAAATCAAGGCACAAAAGCTTTTGGATGACATCATAGGGAAGTCTTTGGAGATAGTGCACAACTCTATTCCTGAACCAGATGTGACTAATGAGGAGGAAGTTGGTATTCGCTTGTTCAAAAATGCTCCCCCAGGAATAGTTTTTGATCATGTGGATGAACAACCACCTAGAAGGAGACCGAGAATTCTTCCGGGAAAAGAAATTAATGAGAAATCAAAGAAGGTCTGTTTGTTTATCGATAAACTCCTGATTGCATCCTATTGGTTTGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.92

Weight (kDa)

6.42

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49890 AT3G49890
fragaria_vesca FvH4_1g17670 FvH4_1g17670 FvH4_1g17670
malus_domestica MD15G1297100.v1.1
prunus_persica Prupe.6G221000_v2.0.a1 Prupe.6G221000_v2.0.a1
pyrus_communis pycom15g26010
rosa_chinensis RchiOBHm_Chr2g0108001
rosa_laevigata RLG00000017632
rosa_roxburghii Rroxscaffold_2G00135740
rosa_rugosa Rorug02G0149400
rosa_samantha Rh2AG198600 Rh2BG211500 Rh2CG203200 Rh2DG206200
rosa_wichuraiana Rw2G015760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 35, 48, 63, 65
AcsI RAATTY 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 57, 115, 178
AluI AGCT 3 cut(s) 57, 115, 178
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 215
AoxI GGCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 5 cut(s) 6, 9, 12, 15, 115
ApoI RAATTY 1 cut(s) 342
AseI ATTAAT 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 18, 21, 24, 27, 102
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 9 cut(s) 7, 10, 13, 16, 36, 48, 63, 66, 116
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 9 cut(s) 8, 11, 14, 17, 37, 49, 64, 67, 117
Bme1390I CCNGG 2 cut(s) 291, 351
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 291, 351
BmsI GCATC 2 cut(s) 22, 422
Bpu1102I GCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 63, 289
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 63, 289
BseGI GGATG 3 cut(s) 190, 319, 413
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 4 cut(s) 67, 88, 111, 266
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 5 cut(s) 18, 21, 24, 27, 102
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 58
BspACI CCGC 4 cut(s) 35, 48, 63, 65
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 63, 289
BssMI GATC 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 190, 319, 413
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 12, 15, 44, 71
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 349
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 5 cut(s) 18, 21, 24, 27, 102
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 190, 319, 413
BveI ACCTGC 1 cut(s) 59
Cfr42I CCGCGG 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 396
CviAII CATG 1 cut(s) 308
CviJI RGCY 6 cut(s) 47, 57, 62, 93, 115, 178
CviKI_1 RGCY 6 cut(s) 47, 57, 62, 93, 115, 178
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 311
FaiI YATR 2 cut(s) 194, 309
FatI CATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 9 cut(s) 7, 10, 13, 16, 36, 48, 63, 66, 116
FokI GGATG 3 cut(s) 197, 326, 400
Fsp4HI GCNGC 9 cut(s) 7, 10, 13, 16, 36, 48, 63, 66, 116
FspBI CTAG 1 cut(s) 327
GluI GCNGC 9 cut(s) 7, 10, 13, 16, 36, 48, 63, 66, 116
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 350
Hin1II CATG 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 125, 230, 406
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 324, 373
HpyCH4V TGCA 2 cut(s) 217, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 15, 44, 71
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 304
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 8 cut(s) 54, 125, 243, 249, 276, 303, 363, 419
Lsp1109I GCAGC 5 cut(s) 18, 21, 24, 27, 102
LweI GCATC 2 cut(s) 22, 422
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 35, 338
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 342, 360
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 9 cut(s) 13, 85, 88, 104, 109, 129, 132, 244, 247
MseI TTAA 2 cut(s) 363, 433
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 65, 115
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 291, 351
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 12, 15, 44, 71
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 9 cut(s) 8, 11, 14, 17, 37, 49, 64, 67, 117
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 312
SacII CCGCGG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 363, 433
SatI GCNGC 9 cut(s) 7, 10, 13, 16, 36, 48, 63, 66, 116
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 291, 351
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 59, 73, 117, 180, 328, 384
SfaNI GCATC 2 cut(s) 22, 422
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 2 cut(s) 342, 360
SsiI CCGC 4 cut(s) 35, 48, 63, 65
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 289, 349
TaqI TCGA 1 cut(s) 396
TaqII GACCGA 1 cut(s) 352
TasI AATT 2 cut(s) 342, 360
TauI GCSGC 4 cut(s) 38, 50, 65, 68
Tru1I TTAA 2 cut(s) 363, 433
Tru9I TTAA 2 cut(s) 363, 433
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 5 cut(s) 6, 9, 12, 15, 115
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 330
VneI GTGCAC 1 cut(s) 215
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 1 cut(s) 342
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.