AT3G50620

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012755
Physical Location & Seq
Reverse (-)
18784660 .. 18786952
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50620.1

Sequence Viewer

Length: 1023 bp
ATGGCGGAGTATATCTGTTTATTCGGCAAGGACAGTGCAGCGATTGTTATAAAGCAACCAAAGAAATCACCATTATTCTTAAGGATGATTGTTTTAGTGTTTGCTATGGTTTGTGGTCTCTACATTTGCGCTGTTTGCTTAAAACAGTTAAGTAATGTCAGCTTCCAAACCTCCCAACTTGTCCAAACTAGTCCTATTGATTCTCACTCGCTACGCTTTGTTACTCGGATTCATTATCCAAAGCCTCAGACTTTTAATAGAGCTGAATGTGGACATAATCCGGTGAGGTACTTTGCGATATTGTCGATGCAGAGATCAGGAAGCGGTTGGTTCGAAACATTGTTGAATAGTCATAACAATGTGAGTTCTAATGGAGAGATTTTCTCTGTTTTGGATCGAAGGAAAAACATTTCTTCAATCATTCAGACTCTTGATAGAGTTTATAATCTTGATTGGTTTACGAGTGCTTCAAAGAACGAATGTTCTGCTGCTATTGGTTTCAAATGGATGCTTAACCAGGGTTTGTTGGAGAACCATAAAGACATAGTAGAGTACTTTAACCGAAGAGGCGTCTCTGCGATATTTCTGTTTAGAAGGAATCCTTTAAGAAGAATGGTTTCTGTGTTGGCAAATTCTTATGACCGTTATGCTAAGCTTTTGAATGGAACTCATAAGTCTCATGTTCATTCTCCTGCAGAGGCAGATGCACTTTCTAGATATAAGCCGGTAATCAACTCGACATCGTTGATCCACGATTTACAAGAAACAGAGAATTCAGCTGCAAAGGCTTTAGAATATTTCAATACCACTCGTCATATTGTTGTCTTCTACGAAGATCTCATAACAAATCAAACGACATTGAAACAAGTTCAAGAGTTTTTGAACATTCCAGTGAAGGATTTGTCAAGCAGACAGGTGAAAATACATAGAGGAGATTTGTCAGATCATATAAAGAATTGGGAAGATATAAACAAGACTTTGAATGGGACTGAGTACGAGAAATTTCTACGAGCTGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

340

Amino Acids

39.07

Weight (kDa)

9.26

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 50, 444
AciI CCGC 2 cut(s) 5, 324
AclWI GGATC 2 cut(s) 402, 742
AcsI RAATTY 3 cut(s) 631, 772, 1001
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 3 cut(s) 290, 554, 995
AflII CTTAAG 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 5 cut(s) 162, 263, 655, 779, 1013
AluI AGCT 5 cut(s) 162, 263, 655, 779, 1013
Alw26I GTCTC 3 cut(s) 122, 577, 681
AlwI GGATC 2 cut(s) 402, 742
ApeKI GCWGC 3 cut(s) 38, 488, 779
ApoI RAATTY 3 cut(s) 631, 772, 1001
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 60, 295, 928
AsuII TTCGAA 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 817
BbvI GCAGC 3 cut(s) 50, 475, 766
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 518
BcoDI GTCTC 3 cut(s) 122, 577, 681
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 2 cut(s) 189, 714
BfmI CTRYAG 1 cut(s) 693
BfrI CTTAAG 1 cut(s) 79
BglII AGATCT 1 cut(s) 835
BisI GCNGC 3 cut(s) 39, 489, 780
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 3 cut(s) 40, 490, 781
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 1 cut(s) 518
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 297, 498, 694
BpiI GAAGAC 1 cut(s) 817
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu1102I GCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 517
BsaWI WCCGGW 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 1 cut(s) 890
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 2 cut(s) 90, 513
BseMII CTCAG 2 cut(s) 260, 981
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 1 cut(s) 945
BseXI GCAGC 3 cut(s) 50, 475, 766
BsgI GTGCAG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 281, 725
BslFI GGGAC 1 cut(s) 1000
BsmAI GTCTC 3 cut(s) 122, 577, 681
BsmBI CGTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 1000
Bso31I GGTCTC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 333
Bsp143I GATC 5 cut(s) 314, 394, 747, 835, 943
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 2 cut(s) 5, 324
BspCNI CTCAG 2 cut(s) 259, 982
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 2 cut(s) 402, 742
BspT104I TTCGAA 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 1 cut(s) 890
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 5 cut(s) 314, 394, 747, 835, 943
BssNI GRCGYC 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 35, 147, 644
Bst6I CTCTTC 1 cut(s) 559
BstACI GRCGYC 1 cut(s) 570
BstAFI CTTAAG 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 246, 651, 990
BstF5I GGATG 2 cut(s) 90, 513
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 5 cut(s) 317, 397, 750, 838, 946
BstMAI GTCTC 3 cut(s) 122, 577, 681
BstMBI GATC 5 cut(s) 314, 394, 747, 835, 943
BstMWI GCNNNNNNNGC 2 cut(s) 135, 785
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 50, 475, 766
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BtsCI GGATG 2 cut(s) 90, 513
BtsIMutI CAGTG 2 cut(s) 40, 897
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 724
CseI GACGC 1 cut(s) 559
Csp6I GTAC 3 cut(s) 289, 553, 994
CviAII CATG 1 cut(s) 680
CviJI RGCY 8 cut(s) 162, 244, 263, 655, 724, 779, 788, 1013
CviKI_1 RGCY 8 cut(s) 162, 244, 263, 655, 724, 779, 788, 1013
CviQI GTAC 3 cut(s) 289, 553, 994
DdeI CTNAG 3 cut(s) 246, 651, 990
DpnI GATC 5 cut(s) 316, 396, 749, 837, 945
DpnII GATC 5 cut(s) 314, 394, 747, 835, 943
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 577
FaeI CATG 1 cut(s) 683
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 1 cut(s) 1000
FatI CATG 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 39, 489, 780
FokI GGATG 2 cut(s) 97, 520
Fsp4HI GCNGC 3 cut(s) 39, 489, 780
FspBI CTAG 2 cut(s) 189, 714
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 39, 489, 780
HapII CCGG 2 cut(s) 281, 725
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 1 cut(s) 683
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 4 cut(s) 200, 229, 427, 598
HpaII CCGG 2 cut(s) 281, 725
HphI GGTGA 3 cut(s) 60, 295, 928
Hpy166II GTNNAC 2 cut(s) 272, 459
Hpy188I TCNGA 4 cut(s) 228, 249, 426, 943
Hpy188III TCNNGA 5 cut(s) 318, 431, 449, 714, 872
Hpy8I GTNNAC 2 cut(s) 272, 459
HpyAV CCTTC 3 cut(s) 393, 588, 889
HpyCH4III ACNGT 3 cut(s) 35, 147, 644
HpyCH4V TGCA 5 cut(s) 38, 310, 695, 707, 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 785
HpyF3I CTNAG 3 cut(s) 246, 651, 990
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 1 cut(s) 683
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 5 cut(s) 314, 394, 747, 835, 943
LpnPI CCDG 8 cut(s) 294, 303, 503, 530, 705, 738, 899, 903
Lsp1109I GCAGC 3 cut(s) 50, 475, 766
LweI GCATC 3 cut(s) 297, 498, 694
MaeI CTAG 2 cut(s) 189, 714
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 316, 396, 749, 837, 945
MboI GATC 5 cut(s) 314, 394, 747, 835, 943
MboII GAAGA 6 cut(s) 405, 576, 621, 817, 845, 974
MflI RGATCY 1 cut(s) 835
MluCI AATT 4 cut(s) 631, 772, 955, 1001
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 6 cut(s) 181, 255, 279, 560, 691, 923
MroXI GAANNNNTTC 1 cut(s) 616
MseI TTAA 7 cut(s) 80, 140, 149, 255, 513, 558, 605
MslI CAYNNNNRTG 2 cut(s) 357, 890
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 2 cut(s) 281, 725
MspR9I CCNGG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 2 cut(s) 135, 785
NdeII GATC 5 cut(s) 314, 394, 747, 835, 943
NlaIII CATG 1 cut(s) 683
NspV TTCGAA 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 3 cut(s) 200, 229, 598
PkrI GCNGC 3 cut(s) 40, 490, 781
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PsiI TTATAA 2 cut(s) 50, 444
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 3 cut(s) 290, 554, 995
RsaNI GTAC 3 cut(s) 289, 553, 994
RseI CAYNNNNRTG 2 cut(s) 357, 890
SaqAI TTAA 7 cut(s) 80, 140, 149, 255, 513, 558, 605
SatI GCNGC 3 cut(s) 39, 489, 780
Sau3AI GATC 5 cut(s) 314, 394, 747, 835, 943
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 518
SetI ASST 8 cut(s) 164, 173, 265, 290, 657, 781, 918, 1015
SfaNI GCATC 3 cut(s) 297, 498, 694
SfcI CTRYAG 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 357, 890
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 4 cut(s) 631, 772, 955, 1001
SsiI CCGC 2 cut(s) 5, 324
SspI AATATT 1 cut(s) 797
SspMI CTAG 2 cut(s) 189, 714
StyD4I CCNGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 35, 147, 644
TaqI TCGA 4 cut(s) 305, 333, 397, 737
TasI AATT 4 cut(s) 631, 772, 955, 1001
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 3 cut(s) 200, 229, 598
Tru1I TTAA 7 cut(s) 80, 140, 149, 255, 513, 558, 605
Tru9I TTAA 7 cut(s) 80, 140, 149, 255, 513, 558, 605
TscAI CASTG 2 cut(s) 40, 897
TseI GCWGC 3 cut(s) 38, 488, 779
TspDTI ATGAA 2 cut(s) 221, 674
TspRI CASTG 2 cut(s) 40, 897
Vha464I CTTAAG 1 cut(s) 79
XapI RAATTY 3 cut(s) 631, 772, 1001
XbaI TCTAGA 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 2 cut(s) 189, 714
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.