Rw2G013830

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012755
Physical Location & Seq
Reverse (-)
15017349 .. 15021251
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013830.1

Sequence Viewer

Length: 768 bp
ATGGCGGAATACATCTTGGGTTTCAGCAAGGAAAGTTTGATTATAAGGCCATCTCCGAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCCTAATGTTTGCAATGGTTTTCGGGGTTTACATATGCTCGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATTGGAAGGCCTTCTCATGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCGATGCCTGAAACTTTCAGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGAGCACCATGAAGAAATAGTAGAATACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTACGCAGAATGGTCTCTGTTCTTGCTAATTCTTATGATCGGTATGCTAAGCTATTGAATGGAACCCACAAGGCACATGTACATTCAGAAGAAGAGGTCTCTCACTGTCTCTATACATATTTGTATGCACGTATTCCTTCCTACCTTCCCCAACATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

255

Amino Acids

29.46

Weight (kDa)

9.41

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AciI CCGC 1 cut(s) 5
AcsI RAATTY 3 cut(s) 167, 222, 601
AfaI GTAC 2 cut(s) 426, 687
AfeI AGCGCT 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 420, 505, 562, 664
AluBI AGCT 1 cut(s) 658
AluI AGCT 1 cut(s) 658
Alw21I GWGCWC 3 cut(s) 277, 488, 537
Alw26I GTCTC 3 cut(s) 625, 709, 719
Alw44I GTGCAC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 2 cut(s) 47, 194
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 167, 222, 601
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 470
AsuII TTCGAA 3 cut(s) 171, 336, 595
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 3 cut(s) 277, 488, 537
BbvI GCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 58, 324
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 3 cut(s) 625, 709, 719
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 1 cut(s) 492
BlpI GCTNAGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 670
BmsI GCATC 4 cut(s) 186, 234, 300, 501
Bpu1102I GCTNAGC 1 cut(s) 654
Bpu14I TTCGAA 3 cut(s) 171, 336, 595
Bsa29I ATCGAT 1 cut(s) 308
BsaAI YACGTR 2 cut(s) 278, 737
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 2 cut(s) 625, 709
Bse1I ACTGG 2 cut(s) 461, 502
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 2 cut(s) 335, 516
BseJI GATNNNNATC 1 cut(s) 149
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 461, 502
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 503
BshFI GGCC 2 cut(s) 49, 196
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 277, 488, 537
BsmAI GTCTC 3 cut(s) 625, 709, 719
BsnI GGCC 2 cut(s) 49, 196
Bso31I GGTCTC 2 cut(s) 625, 709
Bsp119I TTCGAA 3 cut(s) 171, 336, 595
Bsp1286I GDGCHC 3 cut(s) 277, 488, 537
Bsp1407I TGTACA 2 cut(s) 424, 685
Bsp143I GATC 2 cut(s) 317, 643
Bsp1720I GCTNAGC 1 cut(s) 654
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 49, 196
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 308
BspHI TCATGA 2 cut(s) 202, 764
BspLI GGNNCC 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 493
BspT104I TTCGAA 3 cut(s) 171, 336, 595
BspTNI GGTCTC 2 cut(s) 625, 709
BsrDI GCAATG 1 cut(s) 108
BsrGI TGTACA 2 cut(s) 424, 685
BsrI ACTGG 2 cut(s) 461, 502
BssMI GATC 2 cut(s) 317, 643
Bst4CI ACNGT 2 cut(s) 160, 713
Bst6I CTCTTC 1 cut(s) 693
BstAUI TGTACA 2 cut(s) 424, 685
BstBAI YACGTR 2 cut(s) 278, 737
BstBI TTCGAA 3 cut(s) 171, 336, 595
BstDEI CTNAG 2 cut(s) 77, 654
BstF5I GGATG 2 cut(s) 335, 516
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 320, 646
BstMAI GTCTC 3 cut(s) 625, 709, 719
BstMBI GATC 2 cut(s) 317, 643
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 503
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 2 cut(s) 49, 196
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 2 cut(s) 335, 516
BtsIMutI CAGTG 1 cut(s) 709
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 2 cut(s) 202, 764
CfoI GCGC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 425, 686
CviAII CATG 4 cut(s) 203, 539, 683, 765
CviJI RGCY 6 cut(s) 49, 196, 266, 342, 501, 658
CviKI_1 RGCY 6 cut(s) 49, 196, 266, 342, 501, 658
CviQI GTAC 2 cut(s) 425, 686
DdeI CTNAG 2 cut(s) 77, 654
DpnI GATC 2 cut(s) 319, 645
DpnII GATC 2 cut(s) 317, 643
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 196
Eco31I GGTCTC 2 cut(s) 625, 709
Eco47III AGCGCT 1 cut(s) 469
FaeI CATG 4 cut(s) 206, 542, 686, 768
FatI CATG 4 cut(s) 202, 538, 682, 764
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 2 cut(s) 342, 523
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 469
GluI GCNGC 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 49, 196
HhaI GCGC 1 cut(s) 470
Hin1II CATG 4 cut(s) 206, 542, 686, 768
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 2 cut(s) 291, 430
Hpy166II GTNNAC 3 cut(s) 118, 275, 445
Hpy188I TCNGA 4 cut(s) 57, 78, 243, 694
Hpy188III TCNNGA 3 cut(s) 203, 434, 765
Hpy8I GTNNAC 3 cut(s) 118, 275, 445
HpyAV CCTTC 4 cut(s) 186, 207, 753, 761
HpyCH4III ACNGT 2 cut(s) 160, 713
HpyCH4IV ACGT 2 cut(s) 277, 736
HpyCH4V TGCA 7 cut(s) 101, 275, 299, 313, 491, 581, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 77, 654
HpySE526I ACGT 2 cut(s) 277, 736
Hsp92II CATG 4 cut(s) 206, 542, 686, 768
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 317, 643
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 8 cut(s) 247, 261, 297, 306, 442, 483, 506, 553
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 4 cut(s) 186, 234, 300, 501
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 277, 736
MaeIII GTNAC 2 cut(s) 160, 353
MalI GATC 2 cut(s) 319, 645
MboI GATC 2 cut(s) 317, 643
MboII GAAGA 6 cut(s) 70, 408, 554, 609, 707, 710
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 277, 488, 537
MluCI AATT 6 cut(s) 167, 222, 420, 448, 601, 634
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 2 cut(s) 396, 694
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 5 cut(s) 231, 347, 393, 516, 527
MslI CAYNNNNRTG 1 cut(s) 360
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeI CATATG 1 cut(s) 122
NdeII GATC 2 cut(s) 317, 643
NlaIII CATG 4 cut(s) 206, 542, 686, 768
NlaIV GGNNCC 1 cut(s) 670
NmuCI GTSAC 2 cut(s) 160, 353
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 3 cut(s) 171, 336, 595
PagI TCATGA 2 cut(s) 202, 764
PceI AGGCCT 1 cut(s) 196
PciI ACATGT 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 2 cut(s) 278, 737
PscI ACATGT 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 527
PsiI TTATAA 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 670
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 426, 687
RsaNI GTAC 2 cut(s) 425, 686
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 5 cut(s) 231, 347, 393, 516, 527
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 317, 643
SchI GAGTC 1 cut(s) 424
SduI GDGCHC 3 cut(s) 277, 488, 537
SetI ASST 5 cut(s) 280, 660, 705, 739, 753
SfaNI GCATC 4 cut(s) 186, 234, 300, 501
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 3 cut(s) 171, 336, 595
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 6 cut(s) 167, 222, 420, 448, 601, 634
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 1 cut(s) 5
SspI AATATT 2 cut(s) 412, 585
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 196
TaaI ACNGT 2 cut(s) 160, 713
TaiI ACGT 2 cut(s) 280, 739
TaqI TCGA 6 cut(s) 128, 153, 171, 308, 336, 595
TasI AATT 6 cut(s) 167, 222, 420, 448, 601, 634
TatI WGTACW 2 cut(s) 424, 685
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 5 cut(s) 231, 347, 393, 516, 527
Tru9I TTAA 5 cut(s) 231, 347, 393, 516, 527
TscAI CASTG 1 cut(s) 716
TseFI GTSAC 2 cut(s) 160, 353
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 160, 353
TspDTI ATGAA 3 cut(s) 219, 555, 753
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 3 cut(s) 167, 222, 601
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.