Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012755

Physical Location & Seq

Genomic Coordinates Reverse (-)

8956413 .. 8960054

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGGAATACATCTGGGTTTTCAACAAGGAAAGTTTGATTATAAAGCCGGCTCCCAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCTTAATGTTTGCAATGGTCTTTGGAGTTTACATCTGCTCGATATGTCTAAAGCAGATAAGTGTTGAAACTATGACTAAATTTGAAAGCATCAAGGTCATCGGAAGGCCTCCTCATGAAACCAAACAATTAGAAATACCATTCAAGCATTATCCAATTCCTGAAACTTTTAACAGGGCTGAATGTGCACATAATCCTGTAAGATTCTTCGCAATCCTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGCTCTAATGGAGAGATATTTTCAGTTAAGGATAGGAGGTCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTGGACTGGTTCAGTAGTGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGACCACCATGAAGAAATAGTAGAGTACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGGAGAAATTTATTGCGCAGAATAGTCTCGGTTCTTGCTAATTCTTATGATCGGTATGCTAAGCTATTGAATGGAACCCACAAGTCACATGTACATTCAGAAAAAGAGGCTGATACATTGTCAAAGTACAAGCCTATGATCAATTGCACGAAGTTGATAACCGATCTAAAAGAAATGGAGTTGACAGCTGCAAAGGCCATAGAGTACTTCAATAGTACTAGACACATGGTGTTGTATTACGAAGATATTGTCAGAAACCGCACTGTCTTAAAAGATGTTGAAGAGTTCCTCAGAATTCCTAAGAAGAGATTAAAAAGCCATCAGGTAAAAATACACAATGGACCATTGGCAGACCATATCAGAAACTGGGATGATGTCAAGACGACACTTACAGGAACACCATATGAAGATTTTCTCCATGCGGACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

342

Amino Acids

39.71

Weight (kDa)

9.29

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50620 AT3G50620 AT3G50620
fragaria_vesca	FvH4_1g15770
malus_domestica	MD02G1169500.v1.1
prunus_persica	Prupe.7G135700_v2.0.a1
pyrus_communis	pycom02g13640
rosa_chinensis	RchiOBHm_Chr2g0105051
rosa_laevigata	RLG00000017396
rosa_multiflora	Rmu_sc0001537.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138520
rosa_rugosa	Rorug02G0125700 Rorug02G0125800
rosa_samantha	Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana	Rw2G013830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	611
AciI	CCGC	3 cut(s)	5, 853, 1016
AcsI	RAATTY	3 cut(s)	167, 601, 888
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	6 cut(s)	426, 557, 687, 722, 800, 811
AflIII	ACRYGT	1 cut(s)	682
AluBI	AGCT	3 cut(s)	369, 658, 782
AluI	AGCT	3 cut(s)	369, 658, 782
Alw21I	GWGCWC	2 cut(s)	277, 488
Alw26I	GTCTC	1 cut(s)	625
Alw44I	GTGCAC	1 cut(s)	273
AlwNI	CAGNNNCTG	2 cut(s)	497, 960
AoxI	GGCC	2 cut(s)	194, 789
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	491, 782
ApoI	RAATTY	3 cut(s)	167, 601, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	828, 860
AseI	ATTAAT	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	532, 935
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	532, 935
BaeGI	GKGCMC	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	277, 488
BbvI	GCAGC	2 cut(s)	503, 769
BccI	CCATC	2 cut(s)	324, 921
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BclI	TGATCA	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	434, 813
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	2 cut(s)	492, 783
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	2 cut(s)	493, 784
BmcAI	AGTACT	3 cut(s)	557, 800, 811
Bme18I	GGWCC	2 cut(s)	532, 935
BmgT120I	GGNCC	2 cut(s)	532, 935
BmiI	GGNNCC	2 cut(s)	54, 670
BmrI	ACTGGG	1 cut(s)	970
BmsI	GCATC	3 cut(s)	186, 300, 501
BmuI	ACTGGG	1 cut(s)	970
Bpu1102I	GCTNAGC	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	461, 502, 965
Bse3DI	GCAATG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	308
BseGI	GGATG	3 cut(s)	335, 516, 970
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	68, 898
BseNI	ACTGG	3 cut(s)	461, 502, 965
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	503, 769
BshFI	GGCC	2 cut(s)	196, 791
BshVI	ATCGAT	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	277, 488
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	196, 791
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	277, 488
Bsp1407I	TGTACA	2 cut(s)	424, 685
Bsp143I	GATC	4 cut(s)	317, 643, 732, 757
Bsp1720I	GCTNAGC	1 cut(s)	654
BspACI	CCGC	3 cut(s)	5, 853, 1016
BspANI	GGCC	2 cut(s)	196, 791
BspCNI	CTCAG	2 cut(s)	69, 897
BspDI	ATCGAT	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	54, 670
BspMAI	CTGCAG	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	2 cut(s)	424, 685
BsrI	ACTGG	3 cut(s)	461, 502, 965
BssAI	RCCGGY	1 cut(s)	49
BssMI	GATC	4 cut(s)	317, 643, 732, 757
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	2 cut(s)	870, 893
BstAUI	TGTACA	2 cut(s)	424, 685
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	77, 654, 884, 894
BstF5I	GGATG	3 cut(s)	335, 516, 970
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	4 cut(s)	320, 646, 735, 760
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	4 cut(s)	317, 643, 732, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 788
BstNSI	RCATGY	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	503, 769
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	196, 791
BsuTUI	ATCGAT	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	335, 516, 970
BtsIMutI	CAGTG	1 cut(s)	855
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	2 cut(s)	497, 960
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	532, 935
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	6 cut(s)	425, 556, 686, 721, 799, 810
CviAII	CATG	5 cut(s)	203, 539, 683, 820, 1013
CviQI	GTAC	6 cut(s)	425, 556, 686, 721, 799, 810
DdeI	CTNAG	4 cut(s)	77, 654, 884, 894
DpnI	GATC	4 cut(s)	319, 645, 734, 759
DpnII	GATC	4 cut(s)	317, 643, 732, 757
DraIII	CACNNNGTG	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	870, 893
EarI	CTCTTC	2 cut(s)	870, 893
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	532, 935
EcoRI	GAATTC	1 cut(s)	888
FaeI	CATG	5 cut(s)	206, 542, 686, 823, 1016
FatI	CATG	5 cut(s)	202, 538, 682, 819, 1012
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	492, 783
FokI	GGATG	3 cut(s)	342, 523, 977
Fsp4HI	GCNGC	2 cut(s)	492, 783
FspBI	CTAG	2 cut(s)	434, 813
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	2 cut(s)	492, 783
HaeIII	GGCC	2 cut(s)	196, 791
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	5 cut(s)	206, 542, 686, 823, 1016
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	2 cut(s)	291, 430
HpaII	CCGG	1 cut(s)	50
Hpy166II	GTNNAC	4 cut(s)	118, 275, 445, 777
Hpy188I	TCNGA	7 cut(s)	78, 191, 597, 694, 848, 887, 956
Hpy188III	TCNNGA	4 cut(s)	203, 248, 434, 973
Hpy8I	GTNNAC	4 cut(s)	118, 275, 445, 777
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4V	TGCA	7 cut(s)	101, 275, 313, 491, 581, 741, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 788
HpyF3I	CTNAG	4 cut(s)	77, 654, 884, 894
Hsp92II	CATG	5 cut(s)	206, 542, 686, 823, 1016
HspAI	GCGC	1 cut(s)	610
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	317, 643, 732, 757
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	2 cut(s)	503, 769
LweI	GCATC	3 cut(s)	186, 300, 501
MaeI	CTAG	2 cut(s)	434, 813
MaeIII	GTNAC	2 cut(s)	353, 678
MalI	GATC	4 cut(s)	319, 645, 734, 759
MboI	GATC	4 cut(s)	317, 643, 732, 757
MboII	GAAGA	7 cut(s)	286, 408, 554, 848, 887, 910, 1013
MfeI	CAATTG	2 cut(s)	420, 736
MhlI	GDGCHC	2 cut(s)	277, 488
MluCI	AATT	9 cut(s)	167, 215, 243, 420, 448, 601, 634, 736, 888
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	207, 210, 396, 694, 893
MroNI	GCCGGC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	8 cut(s)	92, 258, 347, 393, 516, 527, 863, 905
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	1 cut(s)	50
MunI	CAATTG	2 cut(s)	420, 736
MwoI	GCNNNNNNNGC	2 cut(s)	272, 788
NaeI	GCCGGC	1 cut(s)	51
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	317, 643, 732, 757
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	5 cut(s)	206, 542, 686, 823, 1016
NlaIV	GGNNCC	2 cut(s)	54, 670
NmuCI	GTSAC	2 cut(s)	353, 678
NsbI	TGCGCA	1 cut(s)	611
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	336
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	196
PciI	ACATGT	1 cut(s)	682
PdiI	GCCGGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	493, 784
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PscI	ACATGT	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	54, 670
PspPI	GGNCC	2 cut(s)	532, 935
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	497, 960
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	6 cut(s)	426, 557, 687, 722, 800, 811
RsaNI	GTAC	6 cut(s)	425, 556, 686, 721, 799, 810
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	8 cut(s)	92, 258, 347, 393, 516, 527, 863, 905
SatI	GCNGC	2 cut(s)	492, 783
Sau3AI	GATC	4 cut(s)	317, 643, 732, 757
Sau96I	GGNCC	2 cut(s)	532, 935
ScaI	AGTACT	3 cut(s)	557, 800, 811
SchI	GAGTC	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	277, 488
SetI	ASST	6 cut(s)	186, 371, 407, 660, 784, 921
SfaNI	GCATC	3 cut(s)	186, 300, 501
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	532, 935
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	9 cut(s)	167, 215, 243, 420, 448, 601, 634, 736, 888
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	3 cut(s)	5, 853, 1016
SspI	AATATT	2 cut(s)	412, 585
SspMI	CTAG	2 cut(s)	434, 813
StuI	AGGCCT	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	128, 308, 336
TasI	AATT	9 cut(s)	167, 215, 243, 420, 448, 601, 634, 736, 888
TatI	WGTACW	6 cut(s)	424, 555, 685, 720, 798, 809
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	8 cut(s)	92, 258, 347, 393, 516, 527, 863, 905
Tru9I	TTAA	8 cut(s)	92, 258, 347, 393, 516, 527, 863, 905
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	2 cut(s)	353, 678
TseI	GCWGC	2 cut(s)	491, 782
Tsp45I	GTSAC	2 cut(s)	353, 678
TspDTI	ATGAA	3 cut(s)	219, 555, 1014
TspRI	CASTG	1 cut(s)	862
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	532, 935
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	3 cut(s)	167, 601, 888
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	2 cut(s)	434, 813
ZrmI	AGTACT	3 cut(s)	557, 800, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.