RchiOBHm_Chr2g0105051

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012755
Physical Location & Seq
Reverse (-)
16355685 .. 16359854
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47929

Sequence Viewer

Length: 1029 bp
ATGGCGGAATTCATCTTGGGTTTCAACAAGGAAAGTTTGATTATAAAGCCATCTCCCAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCTTAATGTTTGCAATGGTTTTTGGAGTCTACATCTGCTCGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATTGGAAGGCCTTCTCATGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCAATGCCTGAAACTTTCAGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGTGGGATTAATGGAGCACCATGAAGAGATAGTAGAATACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTGCGCAGAATGGTCTCTGTTCTTGCCAATTCTTATGATCGGTATGCTAAGCTATTGAATGGAACCCACAAGGCACATGTACATTCAGAAGAAGAGGCTGATACACTATCAAAGTACAAGCCTACTATCAATTGCACGAAGTTGATTACTGATCTTAAAGAAATGGAGTCGACAGCTGCAAAGGCCATAGAATGCTTCAATAGCACCAGACACATGGTGTTGTATTATGAAGATATTGTCAAAAACCGCACTGTCTTAAAAGATGTTGAAGAGTTCCTGAGACTTCCTAAGAAGAGATTAAAAAGCCATCAGGTAAAAATACACAACGGACCATTGGCAGACCATATCAGAAACTGGGATGATGTCAAGAATACGCTAACAGGAACACCATATGAATATTTTCTCCATTCGGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

342

Amino Acids

39.59

Weight (kDa)

9.26

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 614
AccI GTMKAC 2 cut(s) 117, 779
AciI CCGC 2 cut(s) 5, 856
AcsI RAATTY 4 cut(s) 8, 167, 222, 604
AdeI CACNNNGTG 1 cut(s) 826
AfaI GTAC 3 cut(s) 426, 690, 725
AfeI AGCGCT 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 685
AgsI TTSAA 7 cut(s) 25, 420, 505, 565, 667, 808, 878
AluBI AGCT 2 cut(s) 661, 785
AluI AGCT 2 cut(s) 661, 785
Alw21I GWGCWC 3 cut(s) 277, 488, 540
Alw26I GTCTC 2 cut(s) 628, 883
Alw44I GTGCAC 1 cut(s) 273
AlwNI CAGNNNCTG 2 cut(s) 497, 963
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 2 cut(s) 194, 792
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 491, 785
ApoI RAATTY 4 cut(s) 8, 167, 222, 604
AseI ATTAAT 1 cut(s) 530
Asp700I GAANNNNTTC 2 cut(s) 196, 1008
AspLEI GCGC 2 cut(s) 470, 615
AspS9I GGNCC 1 cut(s) 938
AsuII TTCGAA 3 cut(s) 171, 336, 598
AvaII GGWCC 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 3 cut(s) 277, 488, 540
BbvI GCAGC 2 cut(s) 503, 772
BccI CCATC 3 cut(s) 58, 324, 924
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 2 cut(s) 628, 883
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 2 cut(s) 492, 786
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 2 cut(s) 493, 787
Bme18I GGWCC 1 cut(s) 938
BmgT120I GGNCC 1 cut(s) 938
BmiI GGNNCC 1 cut(s) 673
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 3 cut(s) 186, 300, 501
BmuI ACTGGG 1 cut(s) 973
Bpu1102I GCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 3 cut(s) 171, 336, 598
Bsa29I ATCGAT 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 628
Bse1I ACTGG 3 cut(s) 461, 502, 968
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 3 cut(s) 335, 516, 973
BseJI GATNNNNATC 1 cut(s) 149
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 68, 878
BseNI ACTGG 3 cut(s) 461, 502, 968
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 503, 772
BshFI GGCC 2 cut(s) 196, 794
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 277, 488, 540
BsmAI GTCTC 2 cut(s) 628, 883
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 2 cut(s) 196, 794
Bso31I GGTCTC 1 cut(s) 628
Bsp119I TTCGAA 3 cut(s) 171, 336, 598
Bsp1286I GDGCHC 3 cut(s) 277, 488, 540
Bsp1407I TGTACA 2 cut(s) 424, 688
Bsp143I GATC 3 cut(s) 317, 646, 760
Bsp1720I GCTNAGC 1 cut(s) 657
BspACI CCGC 2 cut(s) 5, 856
BspANI GGCC 2 cut(s) 196, 794
BspCNI CTCAG 2 cut(s) 69, 879
BspDI ATCGAT 1 cut(s) 308
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 673
BspMAI CTGCAG 1 cut(s) 493
BspT104I TTCGAA 3 cut(s) 171, 336, 598
BspTNI GGTCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 108
BsrGI TGTACA 2 cut(s) 424, 688
BsrI ACTGG 3 cut(s) 461, 502, 968
BssMI GATC 3 cut(s) 317, 646, 760
Bst4CI ACNGT 2 cut(s) 160, 862
Bst6I CTCTTC 4 cut(s) 540, 696, 873, 896
BstAUI TGTACA 2 cut(s) 424, 688
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 3 cut(s) 171, 336, 598
BstDEI CTNAG 4 cut(s) 77, 657, 887, 897
BstF5I GGATG 3 cut(s) 335, 516, 973
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 2 cut(s) 470, 615
BstKTI GATC 3 cut(s) 320, 649, 763
BstMAI GTCTC 2 cut(s) 628, 883
BstMBI GATC 3 cut(s) 317, 646, 760
BstMWI GCNNNNNNNGC 3 cut(s) 272, 791, 810
BstNSI RCATGY 1 cut(s) 689
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 503, 772
BstXI CCANNNNNNTGG 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 2 cut(s) 196, 794
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 3 cut(s) 335, 516, 973
BtsIMutI CAGTG 1 cut(s) 858
CaiI CAGNNNCTG 2 cut(s) 497, 963
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 470, 615
Cfr13I GGNCC 1 cut(s) 938
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 3 cut(s) 425, 689, 724
CviAII CATG 4 cut(s) 203, 542, 686, 823
CviQI GTAC 3 cut(s) 425, 689, 724
DdeI CTNAG 4 cut(s) 77, 657, 887, 897
DpnI GATC 3 cut(s) 319, 648, 762
DpnII GATC 3 cut(s) 317, 646, 760
DraIII CACNNNGTG 1 cut(s) 826
Eam1104I CTCTTC 4 cut(s) 540, 696, 873, 896
EarI CTCTTC 4 cut(s) 540, 696, 873, 896
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 938
Eco47III AGCGCT 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 8
FaeI CATG 4 cut(s) 206, 545, 689, 826
FatI CATG 4 cut(s) 202, 541, 685, 822
FauNDI CATATG 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 117, 779
Fnu4HI GCNGC 2 cut(s) 492, 786
FokI GGATG 3 cut(s) 342, 523, 980
Fsp4HI GCNGC 2 cut(s) 492, 786
FspBI CTAG 1 cut(s) 434
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 2 cut(s) 469, 614
GluI GCNGC 2 cut(s) 492, 786
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 196, 794
HhaI GCGC 2 cut(s) 470, 615
Hin1II CATG 4 cut(s) 206, 545, 689, 826
Hin6I GCGC 2 cut(s) 468, 613
HinP1I GCGC 2 cut(s) 468, 613
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HinfI GANTC 4 cut(s) 114, 291, 430, 776
Hpy166II GTNNAC 4 cut(s) 118, 275, 445, 780
Hpy188I TCNGA 4 cut(s) 78, 697, 959, 1021
Hpy188III TCNNGA 4 cut(s) 203, 434, 886, 976
Hpy8I GTNNAC 4 cut(s) 118, 275, 445, 780
HpyAV CCTTC 2 cut(s) 186, 207
HpyCH4III ACNGT 2 cut(s) 160, 862
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 8 cut(s) 101, 275, 299, 313, 491, 584, 744, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 791, 810
HpyF3I CTNAG 4 cut(s) 77, 657, 887, 897
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 206, 545, 689, 826
HspAI GCGC 2 cut(s) 468, 613
Kzo9I GATC 3 cut(s) 317, 646, 760
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 2 cut(s) 503, 772
LweI GCATC 3 cut(s) 186, 300, 501
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 160, 353
MalI GATC 3 cut(s) 319, 648, 762
MboI GATC 3 cut(s) 317, 646, 760
MboII GAAGA 8 cut(s) 408, 557, 612, 710, 713, 851, 890, 913
MfeI CAATTG 2 cut(s) 420, 739
MhlI GDGCHC 3 cut(s) 277, 488, 540
MluCI AATT 8 cut(s) 8, 167, 222, 420, 448, 604, 637, 739
MlyI GAGTC 3 cut(s) 123, 424, 785
MnlI CCTC 2 cut(s) 396, 697
MroXI GAANNNNTTC 2 cut(s) 196, 1008
MseI TTAA 9 cut(s) 92, 231, 347, 393, 516, 530, 765, 866, 908
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 785
MunI CAATTG 2 cut(s) 420, 739
Mva1269I GAATGC 1 cut(s) 806
MwoI GCNNNNNNNGC 3 cut(s) 272, 791, 810
NdeI CATATG 1 cut(s) 1000
NdeII GATC 3 cut(s) 317, 646, 760
NlaIII CATG 4 cut(s) 206, 545, 689, 826
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 2 cut(s) 160, 353
NsbI TGCGCA 1 cut(s) 614
NspI RCATGY 1 cut(s) 689
NspV TTCGAA 3 cut(s) 171, 336, 598
PagI TCATGA 1 cut(s) 202
PceI AGGCCT 1 cut(s) 196
PciI ACATGT 1 cut(s) 685
PctI GAATGC 1 cut(s) 806
PdmI GAANNNNTTC 2 cut(s) 196, 1008
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 2 cut(s) 493, 787
PleI GAGTC 3 cut(s) 122, 424, 784
PpsI GAGTC 3 cut(s) 122, 424, 784
Ppu21I YACGTR 1 cut(s) 278
PscI ACATGT 1 cut(s) 685
PshBI ATTAAT 1 cut(s) 530
PsiI TTATAA 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 673
PspPI GGNCC 1 cut(s) 938
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 2 cut(s) 497, 963
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 3 cut(s) 426, 690, 725
RsaNI GTAC 3 cut(s) 425, 689, 724
RseI CAYNNNNRTG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 778
SaqAI TTAA 9 cut(s) 92, 231, 347, 393, 516, 530, 765, 866, 908
SatI GCNGC 2 cut(s) 492, 786
Sau3AI GATC 3 cut(s) 317, 646, 760
Sau96I GGNCC 1 cut(s) 938
SchI GAGTC 3 cut(s) 123, 424, 785
SduI GDGCHC 3 cut(s) 277, 488, 540
SetI ASST 5 cut(s) 280, 525, 663, 787, 924
SfaNI GCATC 3 cut(s) 186, 300, 501
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 3 cut(s) 171, 336, 598
SinI GGWCC 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 8 cut(s) 8, 167, 222, 420, 448, 604, 637, 739
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 5, 856
SspI AATATT 3 cut(s) 412, 588, 1007
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 196
TaaI ACNGT 2 cut(s) 160, 862
TaiI ACGT 1 cut(s) 280
TaqI TCGA 7 cut(s) 128, 153, 171, 308, 336, 598, 779
TasI AATT 8 cut(s) 8, 167, 222, 420, 448, 604, 637, 739
TatI WGTACW 3 cut(s) 424, 688, 723
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 9 cut(s) 92, 231, 347, 393, 516, 530, 765, 866, 908
Tru9I TTAA 9 cut(s) 92, 231, 347, 393, 516, 530, 765, 866, 908
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 160, 353
TseI GCWGC 2 cut(s) 491, 785
Tsp45I GTSAC 2 cut(s) 160, 353
TspDTI ATGAA 4 cut(s) 219, 558, 852, 1017
TspGWI ACGGA 2 cut(s) 379, 951
TspRI CASTG 1 cut(s) 865
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 938
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 4 cut(s) 8, 167, 222, 604
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 1 cut(s) 689
XmiI GTMKAC 2 cut(s) 117, 779
XmnI GAANNNNTTC 2 cut(s) 196, 1008
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.