pycom02g13640

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012755
Physical Location & Seq
Reverse (-)
10212664 .. 10216389
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13640.6

Sequence Viewer

Length: 1017 bp
ATGGCTGAAGACATCTGCTTCCTCACCAAGGAAAGTTTGATCATAAAGCCTCCCAAGAAATCTCCTTTGTTATGGAGGATGACAGTCCTAGTGTTTGCGACTGTCTTCGGCGTTTATATCTGCTCAATATGTCTAAAGCAGATAAGCATCCAAACCATGACTAGATTTCAAAGCATCAAAAACATCGAAGGGCCTTTGCACAATAACAAACTACTAGAAAATTCTTATAGGCATTACCCGATGCCCAAAACTTTTAGCAGGGCCGAATGTGCATGCAATCCTGTAAGGTTCTTTGCAATCTTGTCGATGCAGAGATCGGGGAGTGGGTGGTTTGAGAGCTTGTTAAATAGTCATAAAAATGTTAGTTCTAATGGGGAGATATTCTCGGTTAGGAATAGGAGGGAAAGTATATCTTCAATTGTGCAGACTCTGGATAAAGTTTACAGTTTGGACTGGTACAGTAGTGCTTCGAAGAATGAGTGCTCTGCTGCAACTGGCTTCAAGTGGATGCTTAATCAAGGTTTAATGGAGCACCACAGTGAAATTGTACAATACTTCAATCGTAGGGGGGTCTCTGCAATATTTCTCTTTCGAAGAAATTTGTTGCGCAGATTGGTTTCGGTTCTTGCTAATTCCTATGATCGATATGCTAAGCTATTGAATGGAACCCACAAGTCACATGTACATTCAGAACAAGAGGCTGATACACTAGCAAAGTACAAGCCTACTATCAATTGTACAAACTTGATTACTGATCTTAAGGAAATGGAGATGGCAACTGCAAAAGCTTTGGAGTACTTTAATAGCACCAGGCACATGATTGTGTACTACGAAGATATTAATCGCAGTAAACTTAAAGTTGTTCAAGAGTTTCTCGGCCTGCCACGAATGAAATTGACCAGCCGTCAGGTAAAGATACATAACGGATCATTGTCTGACCATATCAAGAACTGGGAGGATGTGCAGAAGACGCTTCTGGGAACACCTTATGAAGAATTTCTCCGTTTGGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

339

Amino Acids

39.13

Weight (kDa)

9.47

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 608
AclWI GGATC 1 cut(s) 934
AcsI RAATTY 3 cut(s) 220, 598, 995
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 7 cut(s) 458, 549, 684, 719, 739, 797, 827
AfiI CCNNNNNNNGG 1 cut(s) 28
AflII CTTAAG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 6 cut(s) 170, 417, 502, 559, 661, 866
AhdI GACNNNNNGTC 1 cut(s) 903
AjnI CCWGG 1 cut(s) 809
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 3 cut(s) 339, 655, 788
AluI AGCT 3 cut(s) 339, 655, 788
Alw21I GWGCWC 2 cut(s) 485, 534
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 1 cut(s) 934
AlwNI CAGNNNCTG 1 cut(s) 430
AoxI GGCC 3 cut(s) 191, 261, 877
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 3 cut(s) 220, 598, 995
AseI ATTAAT 1 cut(s) 840
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 191, 261
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 2 cut(s) 470, 592
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BbsI GAAGAC 3 cut(s) 15, 97, 974
Bbv12I GWGCWC 2 cut(s) 485, 534
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 766
BceAI ACGGC 1 cut(s) 888
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 4 cut(s) 89, 162, 215, 710
BfrI CTTAAG 1 cut(s) 758
BisI GCNGC 1 cut(s) 489
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 490
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 1 cut(s) 811
BmeRI GACNNNNNGTC 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 191, 261
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 5 cut(s) 156, 183, 231, 297, 498
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 3 cut(s) 15, 97, 974
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu1102I GCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 2 cut(s) 470, 592
Bsa29I ATCGAT 1 cut(s) 643
BsaBI GATNNNNATC 2 cut(s) 146, 840
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 458, 499, 956
Bse8I GATNNNNATC 2 cut(s) 146, 840
BseBI CCWGG 1 cut(s) 811
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 4 cut(s) 84, 147, 513, 964
BseJI GATNNNNATC 2 cut(s) 146, 840
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 458, 499, 956
BseXI GCAGC 1 cut(s) 475
BsgI GTGCAG 2 cut(s) 443, 983
BshFI GGCC 3 cut(s) 193, 263, 879
BshVI ATCGAT 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 485, 534
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 577
BsnI GGCC 3 cut(s) 193, 263, 879
Bso31I GGTCTC 1 cut(s) 577
Bsp119I TTCGAA 2 cut(s) 470, 592
Bsp1286I GDGCHC 2 cut(s) 485, 534
Bsp1407I TGTACA 3 cut(s) 547, 682, 737
Bsp143I GATC 5 cut(s) 39, 314, 640, 754, 926
Bsp1720I GCTNAGC 1 cut(s) 651
BspANI GGCC 3 cut(s) 193, 263, 879
BspDI ATCGAT 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 667
BspPI GGATC 1 cut(s) 934
BspT104I TTCGAA 2 cut(s) 470, 592
BspTI CTTAAG 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 577
BsrGI TGTACA 3 cut(s) 547, 682, 737
BsrI ACTGG 3 cut(s) 458, 499, 956
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 39, 314, 640, 754, 926
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 5 cut(s) 85, 103, 446, 461, 539
BstAFI CTTAAG 1 cut(s) 758
BstAUI TGTACA 3 cut(s) 547, 682, 737
BstBI TTCGAA 2 cut(s) 470, 592
BstC8I GCNNGC 2 cut(s) 274, 881
BstDEI CTNAG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 4 cut(s) 84, 147, 513, 964
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 5 cut(s) 42, 317, 643, 757, 929
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 5 cut(s) 39, 314, 640, 754, 926
BstMWI GCNNNNNNNGC 2 cut(s) 269, 970
BstNI CCWGG 1 cut(s) 811
BstNSI RCATGY 2 cut(s) 276, 683
BstSCI CCNGG 1 cut(s) 809
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 3 cut(s) 15, 97, 974
Bsu15I ATCGAT 1 cut(s) 643
BsuRI GGCC 3 cut(s) 193, 263, 879
BsuTUI ATCGAT 1 cut(s) 643
BtsCI GGATG 4 cut(s) 84, 147, 513, 964
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 274, 881
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 191, 261
ClaI ATCGAT 1 cut(s) 643
CseI GACGC 1 cut(s) 979
Csp6I GTAC 7 cut(s) 457, 548, 683, 718, 738, 796, 826
CviAII CATG 4 cut(s) 157, 273, 680, 817
CviQI GTAC 7 cut(s) 457, 548, 683, 718, 738, 796, 826
DdeI CTNAG 1 cut(s) 651
DpnI GATC 5 cut(s) 41, 316, 642, 756, 928
DpnII GATC 5 cut(s) 39, 314, 640, 754, 926
DriI GACNNNNNGTC 1 cut(s) 903
Eam1105I GACNNNNNGTC 1 cut(s) 903
Eco130I CCWWGG 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 4 cut(s) 160, 276, 683, 820
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FatI CATG 4 cut(s) 156, 272, 679, 816
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 4 cut(s) 91, 134, 520, 971
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 4 cut(s) 89, 162, 215, 710
FspI TGCGCA 1 cut(s) 608
GlaI GCGC 1 cut(s) 608
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 3 cut(s) 193, 263, 879
HgaI GACGC 1 cut(s) 979
HhaI GCGC 1 cut(s) 609
Hin1II CATG 4 cut(s) 160, 276, 683, 820
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 1 cut(s) 427
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 442, 826, 851
Hpy188I TCNGA 2 cut(s) 691, 937
Hpy188III TCNNGA 3 cut(s) 431, 866, 946
Hpy8I GTNNAC 3 cut(s) 442, 826, 851
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 5 cut(s) 85, 103, 446, 461, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 970
HpyF3I CTNAG 1 cut(s) 651
Hsp92II CATG 4 cut(s) 160, 276, 683, 820
HspAI GCGC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 5 cut(s) 39, 314, 640, 754, 926
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 5 cut(s) 156, 183, 231, 297, 498
MaeI CTAG 4 cut(s) 89, 162, 215, 710
MaeIII GTNAC 1 cut(s) 675
MalI GATC 5 cut(s) 41, 316, 642, 756, 928
MboI GATC 5 cut(s) 39, 314, 640, 754, 926
MboII GAAGA 8 cut(s) 20, 97, 405, 484, 606, 845, 979, 1004
MfeI CAATTG 2 cut(s) 417, 733
MhlI GDGCHC 2 cut(s) 485, 534
MluCI AATT 8 cut(s) 220, 417, 543, 598, 631, 733, 893, 995
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 6 cut(s) 32, 60, 69, 393, 691, 949
MroXI GAANNNNTTC 1 cut(s) 996
MseI TTAA 8 cut(s) 344, 513, 524, 759, 801, 840, 855, 1015
MslI CAYNNNNRTG 3 cut(s) 357, 537, 821
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 811
MunI CAATTG 2 cut(s) 417, 733
MvaI CCWGG 1 cut(s) 811
MwoI GCNNNNNNNGC 2 cut(s) 269, 970
NdeII GATC 5 cut(s) 39, 314, 640, 754, 926
NlaIII CATG 4 cut(s) 160, 276, 683, 820
NlaIV GGNNCC 1 cut(s) 667
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 1 cut(s) 675
NsbI TGCGCA 1 cut(s) 608
NspI RCATGY 2 cut(s) 276, 683
NspV TTCGAA 2 cut(s) 470, 592
OliI CACNNNNGTG 1 cut(s) 537
PaeI GCATGC 1 cut(s) 276
PciI ACATGT 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 996
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PscI ACATGT 1 cut(s) 679
PshBI ATTAAT 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 809
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 1 cut(s) 667
PspPI GGNCC 2 cut(s) 191, 261
PstNI CAGNNNCTG 1 cut(s) 430
RsaI GTAC 7 cut(s) 458, 549, 684, 719, 739, 797, 827
RsaNI GTAC 7 cut(s) 457, 548, 683, 718, 738, 796, 826
RseI CAYNNNNRTG 3 cut(s) 357, 537, 821
SaqAI TTAA 8 cut(s) 344, 513, 524, 759, 801, 840, 855, 1015
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 5 cut(s) 39, 314, 640, 754, 926
Sau96I GGNCC 2 cut(s) 191, 261
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 2 cut(s) 485, 534
SetI ASST 7 cut(s) 290, 341, 523, 657, 790, 912, 988
SfaNI GCATC 5 cut(s) 156, 183, 231, 297, 498
SfuI TTCGAA 2 cut(s) 470, 592
SmiMI CAYNNNNRTG 3 cut(s) 357, 537, 821
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SphI GCATGC 1 cut(s) 276
Sse9I AATT 8 cut(s) 220, 417, 543, 598, 631, 733, 893, 995
SspI AATATT 1 cut(s) 582
SspMI CTAG 4 cut(s) 89, 162, 215, 710
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 5 cut(s) 85, 103, 446, 461, 539
TaqI TCGA 5 cut(s) 186, 305, 470, 592, 643
TasI AATT 8 cut(s) 220, 417, 543, 598, 631, 733, 893, 995
TatI WGTACW 6 cut(s) 547, 682, 717, 737, 795, 825
Tru1I TTAA 8 cut(s) 344, 513, 524, 759, 801, 840, 855, 1015
Tru9I TTAA 8 cut(s) 344, 513, 524, 759, 801, 840, 855, 1015
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 675
TspDTI ATGAA 2 cut(s) 905, 1005
TspGWI ACGGA 2 cut(s) 939, 992
TspRI CASTG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 758
VspI ATTAAT 1 cut(s) 840
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 3 cut(s) 220, 598, 995
XceI RCATGY 2 cut(s) 276, 683
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 4 cut(s) 89, 162, 215, 710
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.