RLG00000017396

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012755
Physical Location & Seq
Reverse (-)
16086380 .. 16089548
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017396

Sequence Viewer

Length: 1026 bp
ATGGCGGAATACATCTTGGGTTTCAACAAGGAAAGTTTGATTATAAAGCCATCTCCCAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCTTAATGTTTGCAATGGTCTTTGGAGTTTACATCTGCTTGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATCGGAGGGCCTTCTCATGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCGATGCCTGAAACTTTCGGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGAGCACCATGAAGAAATAGTAGAATACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTGCGCAGAATGGTCTCTGTTCTTGCTAATTCTTATGATCGGTATGCTAAACTATTGAATGGAACCCACAAGGCACATGTGCATTCAGAAGAAGAGGCTGATACACTGTCAAAGTACAAGCCTACTATCAATTGCACGAAGTTGATTACCGATCTTAAAGAAATGGAGTCGACAGCTGCAAAGGCCATAGAATGCTTCAATAGCACCAGACACATGGTGTTGTACTATGAAGATATTGTCAAAAACCGCACTGTCTTAAAAGATGTTGAAGAGTTCCTGAGAATTCCTAAGAAGAGATTAAAAAGCCATCAGGTAAAAATACACAACGGACCATTGGCAGACCATATCAGAAACTGGGATGATGTCAAGAATACGCTAACAGGAACACCATATGAATATTTTCTCCACTCGGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

342

Amino Acids

39.41

Weight (kDa)

9.18

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 611
AccI GTMKAC 1 cut(s) 776
AciI CCGC 2 cut(s) 5, 853
AcsI RAATTY 4 cut(s) 167, 222, 601, 888
AdeI CACNNNGTG 1 cut(s) 823
AfaI GTAC 3 cut(s) 426, 722, 830
AfeI AGCGCT 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 7 cut(s) 25, 420, 505, 562, 664, 805, 875
AluBI AGCT 1 cut(s) 782
AluI AGCT 1 cut(s) 782
Alw21I GWGCWC 3 cut(s) 277, 488, 537
Alw26I GTCTC 1 cut(s) 625
Alw44I GTGCAC 1 cut(s) 273
AlwNI CAGNNNCTG 2 cut(s) 497, 960
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 2 cut(s) 194, 789
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 491, 782
ApoI RAATTY 4 cut(s) 167, 222, 601, 888
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 2 cut(s) 470, 612
AspS9I GGNCC 2 cut(s) 194, 935
AsuII TTCGAA 3 cut(s) 171, 336, 595
AvaII GGWCC 1 cut(s) 935
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 3 cut(s) 277, 488, 537
BbvI GCAGC 2 cut(s) 503, 769
BccI CCATC 3 cut(s) 58, 324, 921
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 2 cut(s) 492, 783
BlsI GCNGC 2 cut(s) 493, 784
Bme18I GGWCC 1 cut(s) 935
BmgT120I GGNCC 2 cut(s) 194, 935
BmiI GGNNCC 1 cut(s) 670
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 4 cut(s) 186, 234, 300, 501
BmuI ACTGGG 1 cut(s) 970
Bpu14I TTCGAA 3 cut(s) 171, 336, 595
Bsa29I ATCGAT 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 625
Bse1I ACTGG 3 cut(s) 461, 502, 965
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 3 cut(s) 335, 516, 970
BseJI GATNNNNATC 1 cut(s) 149
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 2 cut(s) 68, 875
BseNI ACTGG 3 cut(s) 461, 502, 965
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 503, 769
BshFI GGCC 2 cut(s) 196, 791
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 277, 488, 537
BsmAI GTCTC 1 cut(s) 625
BsmI GAATGC 2 cut(s) 688, 803
BsnI GGCC 2 cut(s) 196, 791
Bso31I GGTCTC 1 cut(s) 625
Bsp119I TTCGAA 3 cut(s) 171, 336, 595
Bsp1286I GDGCHC 3 cut(s) 277, 488, 537
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 317, 643, 757
BspACI CCGC 2 cut(s) 5, 853
BspANI GGCC 2 cut(s) 196, 791
BspCNI CTCAG 2 cut(s) 69, 876
BspDI ATCGAT 1 cut(s) 308
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 670
BspMAI CTGCAG 1 cut(s) 493
BspT104I TTCGAA 3 cut(s) 171, 336, 595
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 3 cut(s) 461, 502, 965
BssMI GATC 3 cut(s) 317, 643, 757
Bst4CI ACNGT 3 cut(s) 160, 714, 859
Bst6I CTCTTC 3 cut(s) 693, 870, 893
BstAUI TGTACA 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 3 cut(s) 171, 336, 595
BstDEI CTNAG 3 cut(s) 77, 884, 894
BstF5I GGATG 3 cut(s) 335, 516, 970
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 2 cut(s) 470, 612
BstKTI GATC 3 cut(s) 320, 646, 760
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 3 cut(s) 317, 643, 757
BstMWI GCNNNNNNNGC 3 cut(s) 272, 788, 807
BstNSI RCATGY 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 503, 769
BstXI CCANNNNNNTGG 1 cut(s) 820
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 2 cut(s) 196, 791
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 3 cut(s) 335, 516, 970
BtsIMutI CAGTG 2 cut(s) 710, 855
CaiI CAGNNNCTG 2 cut(s) 497, 960
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 470, 612
Cfr13I GGNCC 2 cut(s) 194, 935
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 3 cut(s) 425, 721, 829
CviAII CATG 4 cut(s) 203, 539, 683, 820
CviQI GTAC 3 cut(s) 425, 721, 829
DdeI CTNAG 3 cut(s) 77, 884, 894
DpnI GATC 3 cut(s) 319, 645, 759
DpnII GATC 3 cut(s) 317, 643, 757
DraIII CACNNNGTG 1 cut(s) 823
Eam1104I CTCTTC 3 cut(s) 693, 870, 893
EarI CTCTTC 3 cut(s) 693, 870, 893
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 935
Eco47III AGCGCT 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 888
FaeI CATG 4 cut(s) 206, 542, 686, 823
FatI CATG 4 cut(s) 202, 538, 682, 819
FauNDI CATATG 1 cut(s) 997
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 2 cut(s) 492, 783
FokI GGATG 3 cut(s) 342, 523, 977
Fsp4HI GCNGC 2 cut(s) 492, 783
FspBI CTAG 1 cut(s) 434
FspI TGCGCA 1 cut(s) 611
GlaI GCGC 2 cut(s) 469, 611
GluI GCNGC 2 cut(s) 492, 783
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 196, 791
HhaI GCGC 2 cut(s) 470, 612
Hin1II CATG 4 cut(s) 206, 542, 686, 823
Hin6I GCGC 2 cut(s) 468, 610
HinP1I GCGC 2 cut(s) 468, 610
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HinfI GANTC 3 cut(s) 291, 430, 773
Hpy166II GTNNAC 4 cut(s) 118, 275, 445, 777
Hpy188I TCNGA 6 cut(s) 78, 191, 243, 694, 956, 1018
Hpy188III TCNNGA 4 cut(s) 203, 434, 883, 973
Hpy8I GTNNAC 4 cut(s) 118, 275, 445, 777
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 3 cut(s) 160, 714, 859
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 9 cut(s) 101, 275, 299, 313, 491, 581, 688, 741, 785
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 788, 807
HpyF3I CTNAG 3 cut(s) 77, 884, 894
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 206, 542, 686, 823
HspAI GCGC 2 cut(s) 468, 610
Kzo9I GATC 3 cut(s) 317, 643, 757
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 2 cut(s) 503, 769
LweI GCATC 4 cut(s) 186, 234, 300, 501
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 160, 353
MalI GATC 3 cut(s) 319, 645, 759
MboI GATC 3 cut(s) 317, 643, 757
MboII GAAGA 8 cut(s) 408, 554, 609, 707, 710, 848, 887, 910
MfeI CAATTG 2 cut(s) 420, 736
MhlI GDGCHC 3 cut(s) 277, 488, 537
MluCI AATT 8 cut(s) 167, 222, 420, 448, 601, 634, 736, 888
MlyI GAGTC 2 cut(s) 424, 782
MnlI CCTC 3 cut(s) 185, 396, 694
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 9 cut(s) 92, 231, 347, 393, 516, 527, 762, 863, 905
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 782
MunI CAATTG 2 cut(s) 420, 736
Mva1269I GAATGC 2 cut(s) 688, 803
MwoI GCNNNNNNNGC 3 cut(s) 272, 788, 807
NdeI CATATG 1 cut(s) 997
NdeII GATC 3 cut(s) 317, 643, 757
NlaIII CATG 4 cut(s) 206, 542, 686, 823
NlaIV GGNNCC 1 cut(s) 670
NmuCI GTSAC 2 cut(s) 160, 353
NsbI TGCGCA 1 cut(s) 611
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 3 cut(s) 171, 336, 595
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 682
PctI GAATGC 2 cut(s) 688, 803
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 2 cut(s) 493, 784
PleI GAGTC 2 cut(s) 424, 781
PpsI GAGTC 2 cut(s) 424, 781
Ppu21I YACGTR 1 cut(s) 278
PscI ACATGT 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 527
PsiI TTATAA 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 670
PspPI GGNCC 2 cut(s) 194, 935
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 2 cut(s) 497, 960
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 3 cut(s) 426, 722, 830
RsaNI GTAC 3 cut(s) 425, 721, 829
RseI CAYNNNNRTG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 775
SaqAI TTAA 9 cut(s) 92, 231, 347, 393, 516, 527, 762, 863, 905
SatI GCNGC 2 cut(s) 492, 783
Sau3AI GATC 3 cut(s) 317, 643, 757
Sau96I GGNCC 2 cut(s) 194, 935
SchI GAGTC 2 cut(s) 424, 782
SduI GDGCHC 3 cut(s) 277, 488, 537
SetI ASST 3 cut(s) 280, 784, 921
SfaNI GCATC 4 cut(s) 186, 234, 300, 501
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 3 cut(s) 171, 336, 595
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 8 cut(s) 167, 222, 420, 448, 601, 634, 736, 888
SsiI CCGC 2 cut(s) 5, 853
SspI AATATT 3 cut(s) 412, 585, 1004
SspMI CTAG 1 cut(s) 434
TaaI ACNGT 3 cut(s) 160, 714, 859
TaiI ACGT 1 cut(s) 280
TaqI TCGA 6 cut(s) 153, 171, 308, 336, 595, 776
TasI AATT 8 cut(s) 167, 222, 420, 448, 601, 634, 736, 888
TatI WGTACW 3 cut(s) 424, 720, 828
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 9 cut(s) 92, 231, 347, 393, 516, 527, 762, 863, 905
Tru9I TTAA 9 cut(s) 92, 231, 347, 393, 516, 527, 762, 863, 905
TscAI CASTG 2 cut(s) 717, 862
TseFI GTSAC 2 cut(s) 160, 353
TseI GCWGC 2 cut(s) 491, 782
Tsp45I GTSAC 2 cut(s) 160, 353
TspDTI ATGAA 4 cut(s) 219, 555, 849, 1014
TspGWI ACGGA 2 cut(s) 379, 948
TspRI CASTG 2 cut(s) 717, 862
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 935
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 4 cut(s) 167, 222, 601, 888
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.