Rroxscaffold_2G00138520

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012755
Physical Location & Seq
Forward (+)
76684077 .. 76688037
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138520.1

Sequence Viewer

Length: 663 bp
ATGGCGGAATACATCTTGGGTTTCAACAAGGAAAGTTTGATTATAAAGCCATCTCCCAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCTTAATGTTTGCAATGGTCTTTGGAGTTTACATCTGCTCGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATCGGAAGGCCTTCTCTTGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCGATGCCTGAAACTTTCAGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGAGCACCATGAAGAGATAGTAGAATACTTCAATCGCAGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTGCGCAGAATGGTCTCTGTTCTTGCTAATTCTTATGATCGGTATGCTAAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

220

Amino Acids

25.47

Weight (kDa)

8.54

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
Acc16I TGCGCA 1 cut(s) 610
AciI CCGC 1 cut(s) 5
AcsI RAATTY 3 cut(s) 167, 222, 600
AfaI GTAC 1 cut(s) 426
AfeI AGCGCT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 25, 206, 420, 505, 562
AluBI AGCT 1 cut(s) 657
AluI AGCT 1 cut(s) 657
Alw21I GWGCWC 3 cut(s) 277, 488, 537
Alw26I GTCTC 1 cut(s) 624
Alw44I GTGCAC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 1 cut(s) 194
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 167, 222, 600
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 2 cut(s) 470, 611
AsuII TTCGAA 3 cut(s) 171, 336, 594
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 3 cut(s) 277, 488, 537
BbvI GCAGC 1 cut(s) 503
BccI CCATC 2 cut(s) 58, 324
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 471
BisI GCNGC 1 cut(s) 492
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 1 cut(s) 493
BmsI GCATC 4 cut(s) 186, 234, 300, 501
Bpu1102I GCTNAGC 1 cut(s) 653
Bpu14I TTCGAA 3 cut(s) 171, 336, 594
Bsa29I ATCGAT 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 624
Bse1I ACTGG 2 cut(s) 461, 502
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 2 cut(s) 335, 516
BseJI GATNNNNATC 1 cut(s) 149
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 461, 502
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 503
BshFI GGCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 277, 488, 537
BsmAI GTCTC 1 cut(s) 624
BsnI GGCC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 624
Bsp119I TTCGAA 3 cut(s) 171, 336, 594
Bsp1286I GDGCHC 3 cut(s) 277, 488, 537
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 317, 642
Bsp1720I GCTNAGC 1 cut(s) 653
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 493
BspT104I TTCGAA 3 cut(s) 171, 336, 594
BspTNI GGTCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 2 cut(s) 461, 502
BssMI GATC 2 cut(s) 317, 642
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 3 cut(s) 171, 336, 594
BstDEI CTNAG 2 cut(s) 77, 653
BstF5I GGATG 2 cut(s) 335, 516
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 2 cut(s) 470, 611
BstKTI GATC 2 cut(s) 320, 645
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 2 cut(s) 317, 642
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 503
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 2 cut(s) 335, 516
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 2 cut(s) 470, 611
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 1 cut(s) 425
CviAII CATG 1 cut(s) 539
CviJI RGCY 6 cut(s) 49, 196, 266, 342, 501, 657
CviKI_1 RGCY 6 cut(s) 49, 196, 266, 342, 501, 657
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 77, 653
DpnI GATC 2 cut(s) 319, 644
DpnII GATC 2 cut(s) 317, 642
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 624
Eco47III AGCGCT 1 cut(s) 469
FaeI CATG 1 cut(s) 542
FaiI YATR 5 cut(s) 44, 133, 540, 641, 650
FatI CATG 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 2 cut(s) 342, 523
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 1 cut(s) 434
FspI TGCGCA 1 cut(s) 610
GlaI GCGC 2 cut(s) 469, 610
GluI GCNGC 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 1 cut(s) 196
HhaI GCGC 2 cut(s) 470, 611
Hin1II CATG 1 cut(s) 542
Hin6I GCGC 2 cut(s) 468, 609
HinP1I GCGC 2 cut(s) 468, 609
HinfI GANTC 2 cut(s) 291, 430
Hpy166II GTNNAC 3 cut(s) 118, 275, 445
Hpy188I TCNGA 3 cut(s) 78, 191, 243
Hpy188III TCNNGA 2 cut(s) 203, 434
Hpy8I GTNNAC 3 cut(s) 118, 275, 445
HpyAV CCTTC 2 cut(s) 186, 207
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 6 cut(s) 101, 275, 299, 313, 491, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 77, 653
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 542
HspAI GCGC 2 cut(s) 468, 609
Kzo9I GATC 2 cut(s) 317, 642
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 8 cut(s) 247, 261, 297, 306, 442, 483, 506, 553
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 4 cut(s) 186, 234, 300, 501
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 160, 353
MalI GATC 2 cut(s) 319, 644
MboI GATC 2 cut(s) 317, 642
MboII GAAGA 3 cut(s) 408, 554, 608
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 277, 488, 537
MluCI AATT 6 cut(s) 167, 222, 420, 448, 600, 633
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 6 cut(s) 92, 231, 347, 393, 516, 527
MslI CAYNNNNRTG 1 cut(s) 360
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 317, 642
NlaIII CATG 1 cut(s) 542
NmuCI GTSAC 2 cut(s) 160, 353
NsbI TGCGCA 1 cut(s) 610
NspV TTCGAA 3 cut(s) 171, 336, 594
PceI AGGCCT 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 278
PshBI ATTAAT 1 cut(s) 527
PsiI TTATAA 1 cut(s) 44
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 6 cut(s) 92, 231, 347, 393, 516, 527
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 317, 642
SchI GAGTC 1 cut(s) 424
SduI GDGCHC 3 cut(s) 277, 488, 537
SetI ASST 2 cut(s) 280, 659
SfaNI GCATC 4 cut(s) 186, 234, 300, 501
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 3 cut(s) 171, 336, 594
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 6 cut(s) 167, 222, 420, 448, 600, 633
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 1 cut(s) 5
SspI AATATT 2 cut(s) 412, 584
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 196
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 280
TaqI TCGA 6 cut(s) 128, 153, 171, 308, 336, 594
TasI AATT 6 cut(s) 167, 222, 420, 448, 600, 633
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 6 cut(s) 92, 231, 347, 393, 516, 527
Tru9I TTAA 6 cut(s) 92, 231, 347, 393, 516, 527
TseFI GTSAC 2 cut(s) 160, 353
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 160, 353
TspDTI ATGAA 1 cut(s) 555
TspGWI ACGGA 1 cut(s) 379
VneI GTGCAC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 3 cut(s) 167, 222, 600
XbaI TCTAGA 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.