Rh2AG176400

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012755
Physical Location & Seq
Reverse (-)
16806166 .. 16810089
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG176400.1

Sequence Viewer

Length: 855 bp
ATGATAGTCTTAATGTTTGCAATGGTTTTTGGAGTTTACATCTGCTCGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATTGGAAGGCCTTCTCATGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCAATGCCTGAAACTTTCAGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCTTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGAGCACCATGAAGAGATAGTAGAATACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTGCGCAGAATGGTCTCTGTTCTTGCTAATTCTTATGATCGGTATGCTAAGCTATTGAATGGAACCCACAAGGCACATGTACATTCAGAAGAAGAGGCTGATACACTGTCAAAGTACAAGCCTACTATCAATTGCACGAAGTTGATTACCGATCTTAAAGAAATGGAGTCGACAGCTGCAAAGGCCATAGAATGCTTCAATAGCACCAGACACATGGTGTTGTATTATGAAGATATTGTCAAAAACCGCACTGTAAGGATCTCACTGGGTTATCTTTTAATCCTTAAGAGCTATTTATTCTTAAAAAAATCTTTACCATTTTTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

284

Amino Acids

32.83

Weight (kDa)

9.35

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012755)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50620 AT3G50620 AT3G50620
fragaria_vesca FvH4_1g15770
malus_domestica MD02G1169500.v1.1
prunus_persica Prupe.7G135700_v2.0.a1
pyrus_communis pycom02g13640
rosa_chinensis RchiOBHm_Chr2g0105051
rosa_laevigata RLG00000017396
rosa_multiflora Rmu_sc0001537.1_g000001
rosa_roxburghii Rroxscaffold_2G00138520
rosa_rugosa Rorug02G0125700 Rorug02G0125800
rosa_samantha Rh2AG176400 Rh2BG184300 Rh2CG180900 Rh2DG182400
rosa_wichuraiana Rw2G013830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 530
AccI GTMKAC 1 cut(s) 695
AciI CCGC 1 cut(s) 772
AclWI GGATC 1 cut(s) 791
AcsI RAATTY 3 cut(s) 86, 141, 520
AdeI CACNNNGTG 1 cut(s) 742
AfaI GTAC 3 cut(s) 345, 606, 641
AfeI AGCGCT 1 cut(s) 388
AflII CTTAAG 1 cut(s) 809
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 5 cut(s) 339, 424, 481, 583, 724
AluBI AGCT 4 cut(s) 261, 577, 701, 816
AluI AGCT 4 cut(s) 261, 577, 701, 816
Alw21I GWGCWC 3 cut(s) 196, 407, 456
Alw26I GTCTC 1 cut(s) 544
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 416
Aor51HI AGCGCT 1 cut(s) 388
AoxI GGCC 2 cut(s) 113, 708
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 410, 701
ApoI RAATTY 3 cut(s) 86, 141, 520
AseI ATTAAT 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 389, 531
AsuII TTCGAA 3 cut(s) 90, 255, 514
BaeGI GKGCMC 1 cut(s) 196
Bbv12I GWGCWC 3 cut(s) 196, 407, 456
BbvI GCAGC 2 cut(s) 422, 688
BccI CCATC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 809
BisI GCNGC 2 cut(s) 411, 702
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 2 cut(s) 412, 703
BmiI GGNNCC 1 cut(s) 589
BmrI ACTGGG 1 cut(s) 800
BmsI GCATC 3 cut(s) 105, 219, 420
BmuI ACTGGG 1 cut(s) 800
Bpu1102I GCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 3 cut(s) 90, 255, 514
Bsa29I ATCGAT 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 380, 421, 795
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 227
BseGI GGATG 2 cut(s) 254, 435
BseJI GATNNNNATC 1 cut(s) 68
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 3 cut(s) 380, 421, 795
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 2 cut(s) 422, 688
BshFI GGCC 2 cut(s) 115, 710
BshVI ATCGAT 1 cut(s) 227
BsiHKAI GWGCWC 3 cut(s) 196, 407, 456
BsmAI GTCTC 1 cut(s) 544
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 115, 710
Bso31I GGTCTC 1 cut(s) 544
Bsp119I TTCGAA 3 cut(s) 90, 255, 514
Bsp1286I GDGCHC 3 cut(s) 196, 407, 456
Bsp1407I TGTACA 2 cut(s) 343, 604
Bsp143I GATC 4 cut(s) 236, 562, 676, 783
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 1 cut(s) 772
BspANI GGCC 2 cut(s) 115, 710
BspDI ATCGAT 1 cut(s) 227
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 791
BspT104I TTCGAA 3 cut(s) 90, 255, 514
BspTI CTTAAG 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 2 cut(s) 343, 604
BsrI ACTGG 3 cut(s) 380, 421, 795
BssMI GATC 4 cut(s) 236, 562, 676, 783
Bst4CI ACNGT 3 cut(s) 79, 633, 778
Bst6I CTCTTC 2 cut(s) 456, 612
BstAFI CTTAAG 1 cut(s) 809
BstAUI TGTACA 2 cut(s) 343, 604
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 3 cut(s) 90, 255, 514
BstDEI CTNAG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 254, 435
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 2 cut(s) 389, 531
BstKTI GATC 4 cut(s) 239, 565, 679, 786
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 4 cut(s) 236, 562, 676, 783
BstMWI GCNNNNNNNGC 3 cut(s) 191, 707, 726
BstNSI RCATGY 1 cut(s) 605
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 422, 688
BstX2I RGATCY 1 cut(s) 783
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 783
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 2 cut(s) 115, 710
BsuTUI ATCGAT 1 cut(s) 227
BtsCI GGATG 2 cut(s) 254, 435
BtsIMutI CAGTG 3 cut(s) 629, 774, 788
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 121
CfoI GCGC 2 cut(s) 389, 531
ClaI ATCGAT 1 cut(s) 227
Csp6I GTAC 3 cut(s) 344, 605, 640
CviAII CATG 4 cut(s) 122, 458, 602, 739
CviQI GTAC 3 cut(s) 344, 605, 640
DdeI CTNAG 1 cut(s) 573
DpnI GATC 4 cut(s) 238, 564, 678, 785
DpnII GATC 4 cut(s) 236, 562, 676, 783
DraIII CACNNNGTG 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 456, 612
EarI CTCTTC 2 cut(s) 456, 612
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 544
Eco47III AGCGCT 1 cut(s) 388
FaeI CATG 4 cut(s) 125, 461, 605, 742
FaiI YATR 9 cut(s) 52, 123, 459, 561, 570, 603, 713, 740, 753
FatI CATG 4 cut(s) 121, 457, 601, 738
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 2 cut(s) 411, 702
FokI GGATG 2 cut(s) 261, 442
Fsp4HI GCNGC 2 cut(s) 411, 702
FspBI CTAG 1 cut(s) 353
FspI TGCGCA 1 cut(s) 530
GlaI GCGC 2 cut(s) 388, 530
GluI GCNGC 2 cut(s) 411, 702
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 2 cut(s) 115, 710
HhaI GCGC 2 cut(s) 389, 531
Hin1II CATG 4 cut(s) 125, 461, 605, 742
Hin6I GCGC 2 cut(s) 387, 529
HinP1I GCGC 2 cut(s) 387, 529
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 3 cut(s) 210, 349, 692
Hpy166II GTNNAC 4 cut(s) 37, 194, 364, 696
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 2 cut(s) 122, 353
Hpy8I GTNNAC 4 cut(s) 37, 194, 364, 696
HpyAV CCTTC 2 cut(s) 105, 126
HpyCH4III ACNGT 3 cut(s) 79, 633, 778
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 8 cut(s) 20, 194, 218, 232, 410, 500, 660, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 707, 726
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 4 cut(s) 125, 461, 605, 742
HspAI GCGC 2 cut(s) 387, 529
Kzo9I GATC 4 cut(s) 236, 562, 676, 783
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 2 cut(s) 422, 688
LweI GCATC 3 cut(s) 105, 219, 420
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 79, 272
MalI GATC 4 cut(s) 238, 564, 678, 785
MboI GATC 4 cut(s) 236, 562, 676, 783
MboII GAAGA 6 cut(s) 327, 473, 528, 626, 629, 767
MfeI CAATTG 2 cut(s) 339, 655
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 3 cut(s) 196, 407, 456
MluCI AATT 7 cut(s) 86, 141, 339, 367, 520, 553, 655
MlyI GAGTC 2 cut(s) 343, 701
MnlI CCTC 2 cut(s) 315, 613
MroXI GAANNNNTTC 1 cut(s) 115
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 701
MspCI CTTAAG 1 cut(s) 809
MunI CAATTG 2 cut(s) 339, 655
Mva1269I GAATGC 1 cut(s) 722
MwoI GCNNNNNNNGC 3 cut(s) 191, 707, 726
NdeII GATC 4 cut(s) 236, 562, 676, 783
NlaIII CATG 4 cut(s) 125, 461, 605, 742
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 2 cut(s) 79, 272
NsbI TGCGCA 1 cut(s) 530
NspI RCATGY 1 cut(s) 605
NspV TTCGAA 3 cut(s) 90, 255, 514
PagI TCATGA 1 cut(s) 121
PceI AGGCCT 1 cut(s) 115
PciI ACATGT 1 cut(s) 601
PctI GAATGC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 412, 703
PleI GAGTC 2 cut(s) 343, 700
PpsI GAGTC 2 cut(s) 343, 700
Ppu21I YACGTR 1 cut(s) 197
PscI ACATGT 1 cut(s) 601
PshBI ATTAAT 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 589
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 3 cut(s) 345, 606, 641
RsaNI GTAC 3 cut(s) 344, 605, 640
RseI CAYNNNNRTG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 694
SatI GCNGC 2 cut(s) 411, 702
Sau3AI GATC 4 cut(s) 236, 562, 676, 783
SchI GAGTC 2 cut(s) 343, 701
SduI GDGCHC 3 cut(s) 196, 407, 456
SetI ASST 5 cut(s) 199, 263, 579, 703, 818
SfaNI GCATC 3 cut(s) 105, 219, 420
SfcI CTRYAG 1 cut(s) 408
SfuI TTCGAA 3 cut(s) 90, 255, 514
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 7 cut(s) 86, 141, 339, 367, 520, 553, 655
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 772
SspI AATATT 2 cut(s) 331, 504
SspMI CTAG 1 cut(s) 353
StuI AGGCCT 1 cut(s) 115
TaaI ACNGT 3 cut(s) 79, 633, 778
TaiI ACGT 1 cut(s) 199
TaqI TCGA 7 cut(s) 47, 72, 90, 227, 255, 514, 695
TasI AATT 7 cut(s) 86, 141, 339, 367, 520, 553, 655
TatI WGTACW 3 cut(s) 343, 604, 639
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 3 cut(s) 636, 781, 795
TseFI GTSAC 2 cut(s) 79, 272
TseI GCWGC 2 cut(s) 410, 701
Tsp45I GTSAC 2 cut(s) 79, 272
TspDTI ATGAA 4 cut(s) 138, 474, 768, 839
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 3 cut(s) 636, 781, 795
Vha464I CTTAAG 1 cut(s) 809
VneI GTGCAC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 446
XapI RAATTY 3 cut(s) 86, 141, 520
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.