AT3G50670

U1 small nuclear ribonucleoprotein 70

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
18826160 .. 18829684
3525 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50670.2

Sequence Viewer

Length: 1284 bp
ATGGGAGACTCCGGCGATCCTTTCTTGCGTAATCCAAACGCCGCTGTTCAAGCTCGCGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAGAGCCACCCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTCGCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAAAGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGCTGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTGGAGAGAGGTAGAACCGTCCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAGTGGGTGGTGGTGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATCGAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAAAGGTCTCGTGAGCTGTCTCACGAACAACCTCGAGAGAGGTCTCGTGACAGACCGAGAGAGGATAAGCACCACAGAGACCGAGACCAAGGAGGCAGAGACAGGGATAGGGACAGCAGACGTGATCGTGACCGGACCCGTGACAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGATCGTACTTCAAGGGATCATGACCGAGACCGCAGTAGAAAGAAGGAGCGGGATTATGAAGGAGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAGAGAGATGCAGAGTACCGTGGCGAGCCAGAAGAAACTCGTGGCTACTATGAAGACGATCAAGGGGACACAGACCGGTACAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGTGAGTACAAGCGGTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGA

Protein Analysis

427

Amino Acids

50.39

Weight (kDa)

9.39

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U1snRNP70_N PF12220 41 - 129 3.3e-21 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1057
AccII CGCG 2 cut(s) 57, 1267
AciI CCGC 8 cut(s) 42, 161, 203, 743, 985, 1039, 1057, 1246
AclWI GGATC 7 cut(s) 11, 248, 261, 380, 398, 1017, 1032
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 2 cut(s) 71, 1207
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 6 cut(s) 173, 557, 1015, 1124, 1187, 1241
AfiI CCNNNNNNNGG 3 cut(s) 212, 766, 1000
AflII CTTAAG 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 1182
AgsI TTSAA 7 cut(s) 50, 142, 287, 344, 429, 476, 1020
AjiI CACGTC 2 cut(s) 158, 947
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AleI CACNNNNGTG 1 cut(s) 567
AluBI AGCT 8 cut(s) 53, 91, 97, 145, 520, 581, 596, 841
AluI AGCT 8 cut(s) 53, 91, 97, 145, 520, 581, 596, 841
AlwI GGATC 7 cut(s) 11, 248, 261, 380, 398, 1017, 1032
Ama87I CYCGRG 2 cut(s) 804, 858
ApeKI GCWGC 2 cut(s) 350, 581
ApoI RAATTY 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 1182
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 485, 696, 960, 1101
AsuHPI GGTGA 3 cut(s) 520, 728, 1085
AvaI CYCGRG 2 cut(s) 804, 858
AvaII GGWCC 4 cut(s) 485, 696, 960, 1101
BaeGI GKGCMC 1 cut(s) 203
BamHI GGATCC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BauI CACGAG 3 cut(s) 834, 870, 1146
BbsI GAAGAC 1 cut(s) 1167
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 337, 568
BccI CCATC 3 cut(s) 94, 593, 781
BceAI ACGGC 2 cut(s) 631, 972
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 514
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 3 cut(s) 42, 351, 582
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 3 cut(s) 43, 352, 583
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 4 cut(s) 485, 696, 960, 1101
BmeT110I CYCGRG 2 cut(s) 804, 858
BmgBI CACGTC 2 cut(s) 158, 947
BmgT120I GGNCC 4 cut(s) 485, 696, 960, 1101
BmiI GGNNCC 5 cut(s) 255, 697, 771, 962, 1103
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 1 cut(s) 1105
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 1167
BpmI CTGGAG 2 cut(s) 350, 420
Bpu10I CCTNAGC 2 cut(s) 273, 354
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 1261
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 7 cut(s) 772, 837, 873, 897, 903, 975, 1029
BsaJI CCNNGG 4 cut(s) 248, 782, 913, 1126
BsaWI WCCGGW 2 cut(s) 957, 1182
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 766, 1000
Bse118I RCCGGY 1 cut(s) 1182
Bse1I ACTGG 5 cut(s) 124, 333, 403, 668, 760
Bse8I GATNNNNATC 1 cut(s) 1261
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 4 cut(s) 248, 782, 913, 1126
BseJI GATNNNNATC 1 cut(s) 1261
BseLI CCNNNNNNNGG 3 cut(s) 212, 766, 1000
BseMII CTCAG 4 cut(s) 234, 236, 345, 462
BseNI ACTGG 5 cut(s) 124, 333, 403, 668, 760
BseRI GAGGAG 2 cut(s) 782, 987
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 337, 568
Bsh1236I CGCG 2 cut(s) 57, 1267
BshTI ACCGGT 1 cut(s) 1182
BsiHKCI CYCGRG 2 cut(s) 804, 858
BsiSI CCGG 3 cut(s) 12, 958, 1183
BslFI GGGAC 6 cut(s) 641, 709, 950, 1017, 1087, 1187
BslI CCNNNNNNNGG 3 cut(s) 212, 766, 1000
BsmFI GGGAC 6 cut(s) 641, 709, 950, 1017, 1087, 1187
Bso31I GGTCTC 7 cut(s) 772, 837, 873, 897, 903, 975, 1029
BsoBI CYCGRG 2 cut(s) 804, 858
Bsp1286I GDGCHC 1 cut(s) 203
Bsp1720I GCTNAGC 1 cut(s) 243
Bsp68I TCGCGA 1 cut(s) 1267
BspACI CCGC 8 cut(s) 42, 161, 203, 743, 985, 1039, 1057, 1246
BspCNI CTCAG 4 cut(s) 235, 235, 346, 461
BspFNI CGCG 2 cut(s) 57, 1267
BspHI TCATGA 1 cut(s) 1027
BspLI GGNNCC 5 cut(s) 255, 697, 771, 962, 1103
BspPI GGATC 7 cut(s) 11, 248, 261, 380, 398, 1017, 1032
BspQI GCTCTTC 1 cut(s) 783
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 7 cut(s) 772, 837, 873, 897, 903, 975, 1029
BsrBI CCGCTC 1 cut(s) 1057
BsrFI RCCGGY 1 cut(s) 1182
BsrI ACTGG 5 cut(s) 124, 333, 403, 668, 760
BssAI RCCGGY 1 cut(s) 1182
BssECI CCNNGG 4 cut(s) 248, 782, 913, 1126
BssNI GRCGYC 1 cut(s) 667
BssSI CACGAG 3 cut(s) 834, 870, 1146
BssT1I CCWWGG 1 cut(s) 913
Bst2BI CACGAG 3 cut(s) 834, 870, 1146
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 655, 995, 1127, 1190
Bst6I CTCTTC 3 cut(s) 185, 616, 783
BstACI GRCGYC 1 cut(s) 667
BstAFI CTTAAG 1 cut(s) 92
BstC8I GCNNGC 5 cut(s) 55, 203, 594, 677, 1133
BstDEI CTNAG 6 cut(s) 222, 243, 273, 354, 448, 1251
BstDSI CCRYGG 2 cut(s) 782, 1126
BstENI CCTNNNNNAGG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 57, 1267
BstHHI GCGC 1 cut(s) 59
BstMWI GCNNNNNNNGC 3 cut(s) 50, 151, 160
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 203
BstUI CGCG 2 cut(s) 57, 1267
BstV1I GCAGC 2 cut(s) 337, 568
BstV2I GAAGAC 1 cut(s) 1167
BstX2I RGATCY 2 cut(s) 253, 403
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 2 cut(s) 253, 403
BtgI CCRYGG 2 cut(s) 782, 1126
BtgZI GCGATG 1 cut(s) 1178
BtrI CACGTC 2 cut(s) 158, 947
BtuMI TCGCGA 1 cut(s) 1267
Cac8I GCNNGC 5 cut(s) 55, 203, 594, 677, 1133
CciI TCATGA 1 cut(s) 1027
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 1182
Cfr13I GGNCC 4 cut(s) 485, 696, 960, 1101
CseI GACGC 1 cut(s) 656
Csp6I GTAC 6 cut(s) 172, 556, 1014, 1123, 1186, 1240
CspAI ACCGGT 1 cut(s) 1182
CviAII CATG 4 cut(s) 559, 574, 1028, 1085
CviQI GTAC 6 cut(s) 172, 556, 1014, 1123, 1186, 1240
DdeI CTNAG 6 cut(s) 222, 243, 273, 354, 448, 1251
Eam1104I CTCTTC 3 cut(s) 185, 616, 783
EarI CTCTTC 3 cut(s) 185, 616, 783
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 913
Eco31I GGTCTC 7 cut(s) 772, 837, 873, 897, 903, 975, 1029
Eco47I GGWCC 4 cut(s) 485, 696, 960, 1101
Eco57I CTGAAG 2 cut(s) 71, 1207
Eco88I CYCGRG 2 cut(s) 804, 858
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 913
FaeI CATG 4 cut(s) 562, 577, 1031, 1088
FaqI GGGAC 6 cut(s) 641, 709, 950, 1017, 1087, 1187
FatI CATG 4 cut(s) 558, 573, 1027, 1084
FauI CCCGC 2 cut(s) 210, 1050
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 42, 351, 582
Fsp4HI GCNGC 3 cut(s) 42, 351, 582
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 42, 351, 582
GsuI CTGGAG 2 cut(s) 350, 420
HapII CCGG 3 cut(s) 12, 958, 1183
HgaI GACGC 1 cut(s) 656
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 4 cut(s) 562, 577, 1031, 1088
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 4 cut(s) 8, 443, 476, 1262
HpaII CCGG 3 cut(s) 12, 958, 1183
HphI GGTGA 3 cut(s) 520, 728, 1085
Hpy166II GTNNAC 2 cut(s) 671, 689
Hpy188I TCNGA 6 cut(s) 69, 108, 451, 766, 1226, 1261
Hpy8I GTNNAC 2 cut(s) 671, 689
HpyAV CCTTC 3 cut(s) 303, 1045, 1061
HpyCH4III ACNGT 4 cut(s) 655, 995, 1127, 1190
HpyCH4IV ACGT 3 cut(s) 157, 946, 1234
HpyCH4V TGCA 3 cut(s) 562, 584, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 151, 160
HpyF3I CTNAG 6 cut(s) 222, 243, 273, 354, 448, 1251
HpySE526I ACGT 3 cut(s) 157, 946, 1234
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 4 cut(s) 562, 577, 1031, 1088
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 514
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 3 cut(s) 271, 769, 1054
Lsp1109I GCAGC 2 cut(s) 337, 568
LweI GCATC 1 cut(s) 1105
MaeII ACGT 3 cut(s) 157, 946, 1234
MaeIII GTNAC 8 cut(s) 233, 508, 569, 872, 953, 965, 989, 995
MbiI CCGCTC 1 cut(s) 1057
MboII GAAGA 9 cut(s) 77, 202, 633, 731, 762, 800, 1151, 1172, 1226
MflI RGATCY 2 cut(s) 253, 403
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 5 cut(s) 287, 312, 320, 489, 723
MlyI GAGTC 1 cut(s) 2
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 6 cut(s) 93, 125, 362, 435, 462, 492
MslI CAYNNNNRTG 2 cut(s) 567, 1089
MspA1I CMGCKG 2 cut(s) 44, 520
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 3 cut(s) 12, 958, 1183
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 57, 1267
MwoI GCNNNNNNNGC 3 cut(s) 50, 151, 160
NlaIII CATG 4 cut(s) 562, 577, 1031, 1088
NlaIV GGNNCC 5 cut(s) 255, 697, 771, 962, 1103
NmuCI GTSAC 7 cut(s) 508, 569, 872, 953, 965, 989, 995
NruI TCGCGA 1 cut(s) 1267
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 567
PaeR7I CTCGAG 1 cut(s) 858
PagI TCATGA 1 cut(s) 1027
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 443, 476, 1262
PinAI ACCGGT 1 cut(s) 1182
PkrI GCNGC 3 cut(s) 43, 352, 583
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PpuMI RGGWCCY 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 5 cut(s) 255, 697, 771, 962, 1103
PspPI GGNCC 4 cut(s) 485, 696, 960, 1101
PspPPI RGGWCCY 1 cut(s) 696
PsuI RGATCY 2 cut(s) 253, 403
PvuII CAGCTG 1 cut(s) 520
RruI TCGCGA 1 cut(s) 1267
RsaI GTAC 6 cut(s) 173, 557, 1015, 1124, 1187, 1241
RsaNI GTAC 6 cut(s) 172, 556, 1014, 1123, 1186, 1240
RseI CAYNNNNRTG 2 cut(s) 567, 1089
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 6 cut(s) 93, 125, 362, 435, 462, 492
SatI GCNGC 3 cut(s) 42, 351, 582
Sau96I GGNCC 4 cut(s) 485, 696, 960, 1101
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 1 cut(s) 1105
Sfr274I CTCGAG 1 cut(s) 858
SinI GGWCC 4 cut(s) 485, 696, 960, 1101
SlaI CTCGAG 1 cut(s) 858
SmiMI CAYNNNNRTG 2 cut(s) 567, 1089
SmlI CTYRAG 3 cut(s) 92, 700, 858
SmoI CTYRAG 3 cut(s) 92, 700, 858
Sse9I AATT 5 cut(s) 287, 312, 320, 489, 723
SsiI CCGC 8 cut(s) 42, 161, 203, 743, 985, 1039, 1057, 1246
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 4 cut(s) 655, 995, 1127, 1190
TaiI ACGT 3 cut(s) 160, 949, 1237
TaqI TCGA 2 cut(s) 776, 859
TaqII GACCGA 4 cut(s) 895, 921, 1047, 1089
TasI AATT 5 cut(s) 287, 312, 320, 489, 723
TatI WGTACW 3 cut(s) 171, 555, 1239
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 443, 476, 1262
Tru1I TTAA 6 cut(s) 93, 125, 362, 435, 462, 492
Tru9I TTAA 6 cut(s) 93, 125, 362, 435, 462, 492
TseFI GTSAC 7 cut(s) 508, 569, 872, 953, 965, 989, 995
TseI GCWGC 2 cut(s) 350, 581
Tsp45I GTSAC 7 cut(s) 508, 569, 872, 953, 965, 989, 995
TspDTI ATGAA 7 cut(s) 305, 491, 538, 590, 1080, 1173, 1245
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 4 cut(s) 485, 696, 960, 1101
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 858
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.