Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Reverse (-)

22651647 .. 22655806

Gene Structure 4160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1264300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGACGCCTTTCAAGTTTGTTCTCTCTGATTTAGTTTTATTGTTAGTGGAGTCTATGCAAATTTGTATTACTATTACAGGTGTCTCAACAAATTTACTGGTCCGATTGGTCGCTGACAAAGAAACAAATAAACCTAGAGGCTATGGATTCATTGAGTACATGCATACAAGGGACATGAAAGCTGCATACAAACAAGCTGATGGGAGGAAGATTGAGGGAAGAAGGGTACTTGTTGATGTTGAACGTGGAAGAACAGTTCCAAACTGGCGACCCCGCCGACTGGGTGGTGGGCTTGGAACCACCAGAGTTGGAGGTGAAGATGTCAATCAGAAATATTCTGGAAGGGAGCAAGTACAATCCGGAGGACAATCCCGGTCTGAGGAGCCAAGGGTACGCGAGGAGCGACATGTAGACTTGGATAGAGAAAAATCCCGTGAAAGGGGAAAAGAGAAAGAAAAGGAAAGAGAAAGGGAAAAGTCCCGCGAACGCTCCCATGACAAGTCTAGAGACCGTGATCACAGGGAAGATAGACACCACAGAGACCGTGATAGAAACAGGGACAAGGACAGGGATAGGGAAAGAGATCGTGGTCGTGATCGGGACCGTACTCGTGAACGAGGACGGGATCGTGGTCGCGACTATGAGCATGGTCGTGATCGAGACAGAGACCGTGATCGGGAGCGTGATCGTGATCGTCGCTCTAGAGACAGGGAGAGGGATGATGAAGTTGGGGACCCTGAGCATGATCGTGGCCATTCCCATGAACGTATTGAATCAAAACATGAGAGGGTCCGACATGGGGAGAGGGAGCGGGGTTATGACCACACTGCCCAAGAAGATGACCAGGGTTGGTTTGAACAACCTGGACATGGCCATAGGCGCTCAGAGCCTGATGATGATGATAAGCCCTACGAGCGTCATTGTAGCCAGTATGATCAATTGGATGTCCAGCATGATGACGACCGCTACAAACAATATCCTGACCATGCTCATGACCGCTATGATCAAATGGAAGAGGATGATTACCGTTATGAACAAGCACCAGCTGAGTCCCGTGAAAGGGAGAGGGGTGGAGATGTGGAGCGTGATTATCGGAGGTCATCTAGATCACTCTCTCGGGATTACAATGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

379

Amino Acids

45.87

Weight (kDa)

6.58

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 76	6.1e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	3 cut(s)	396, 483, 636
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	5 cut(s)	274, 481, 811, 964, 997
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	2 cut(s)	751, 871
AcsI	RAATTY	2 cut(s)	60, 91
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	158, 228, 354, 393, 607
AfiI	CCNNNNNNNGG	9 cut(s)	280, 379, 438, 439, 676, 799, 869, 1059, 1060
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	13, 242, 773, 857
AjnI	CCWGG	2 cut(s)	843, 862
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	3 cut(s)	182, 197, 1046
AluI	AGCT	3 cut(s)	182, 197, 1046
Alw26I	GTCTC	6 cut(s)	88, 501, 534, 654, 660, 699
AlwI	GGATC	1 cut(s)	633
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	1 cut(s)	1116
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	2 cut(s)	751, 871
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	60, 91
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	4 cut(s)	100, 601, 733, 790
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	1116
AvaII	GGWCC	4 cut(s)	100, 601, 733, 790
BalI	TGGCCA	2 cut(s)	753, 873
BauI	CACGAG	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	845, 864
BclI	TGATCA	3 cut(s)	514, 934, 1003
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	6 cut(s)	88, 501, 534, 654, 660, 699
BfaI	CTAG	4 cut(s)	135, 504, 702, 1104
BfoI	RGCGCY	1 cut(s)	883
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	3 cut(s)	373, 845, 864
Bme18I	GGWCC	4 cut(s)	100, 601, 733, 790
BmeT110I	CYCGRG	1 cut(s)	1116
BmgT120I	GGNCC	4 cut(s)	100, 601, 733, 790
BmiI	GGNNCC	6 cut(s)	298, 384, 602, 734, 735, 791
BmrFI	CCNGG	3 cut(s)	373, 845, 864
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	373
BsaBI	GATNNNNATC	2 cut(s)	324, 690
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	3 cut(s)	501, 534, 660
BsaJI	CCNNGG	2 cut(s)	386, 844
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	9 cut(s)	280, 379, 438, 439, 676, 799, 869, 1059, 1060
Bse1I	ACTGG	4 cut(s)	102, 269, 285, 928
Bse8I	GATNNNNATC	2 cut(s)	324, 690
BseAI	TCCGGA	1 cut(s)	359
BseBI	CCWGG	2 cut(s)	845, 864
BseDI	CCNNGG	2 cut(s)	386, 844
BseGI	GGATG	3 cut(s)	724, 949, 1024
BseJI	GATNNNNATC	2 cut(s)	324, 690
BseLI	CCNNNNNNNGG	9 cut(s)	280, 379, 438, 439, 676, 799, 869, 1059, 1060
BseMII	CTCAG	4 cut(s)	369, 729, 897, 1038
BseNI	ACTGG	4 cut(s)	102, 269, 285, 928
BseRI	GAGGAG	2 cut(s)	395, 413
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	3 cut(s)	396, 483, 636
Bsh1285I	CGRYCG	1 cut(s)	964
BshFI	GGCC	2 cut(s)	753, 873
BsiEI	CGRYCG	1 cut(s)	964
BsiHKCI	CYCGRG	1 cut(s)	1116
BsiSI	CCGG	2 cut(s)	360, 373
BslFI	GGGAC	6 cut(s)	185, 463, 572, 614, 746, 1036
BslI	CCNNNNNNNGG	9 cut(s)	280, 379, 438, 439, 676, 799, 869, 1059, 1060
BsmAI	GTCTC	6 cut(s)	88, 501, 534, 654, 660, 699
BsmFI	GGGAC	6 cut(s)	185, 463, 572, 614, 746, 1036
BsnI	GGCC	2 cut(s)	753, 873
Bso31I	GGTCTC	3 cut(s)	501, 534, 660
BsoBI	CYCGRG	1 cut(s)	1116
Bsp13I	TCCGGA	1 cut(s)	359
Bsp68I	TCGCGA	1 cut(s)	636
BspACI	CCGC	5 cut(s)	274, 481, 811, 964, 997
BspANI	GGCC	2 cut(s)	753, 873
BspCNI	CTCAG	4 cut(s)	370, 730, 896, 1039
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	3 cut(s)	396, 483, 636
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	6 cut(s)	298, 384, 602, 734, 735, 791
BspPI	GGATC	1 cut(s)	633
BspTNI	GGTCTC	3 cut(s)	501, 534, 660
BsrBI	CCGCTC	1 cut(s)	811
BsrI	ACTGG	4 cut(s)	102, 269, 285, 928
BssECI	CCNNGG	2 cut(s)	386, 844
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	845, 864
Bst4CI	ACNGT	6 cut(s)	256, 512, 545, 605, 671, 1028
Bst6I	CTCTTC	1 cut(s)	1008
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	4 cut(s)	378, 738, 883, 1047
BstF5I	GGATG	3 cut(s)	724, 949, 1024
BstFNI	CGCG	3 cut(s)	396, 483, 636
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	882
BstMAI	GTCTC	6 cut(s)	88, 501, 534, 654, 660, 699
BstMCI	CGRYCG	1 cut(s)	964
BstMWI	GCNNNNNNNGC	3 cut(s)	879, 886, 913
BstNI	CCWGG	2 cut(s)	845, 864
BstNSI	RCATGY	2 cut(s)	163, 410
BstSCI	CCNGG	3 cut(s)	371, 843, 862
BstUI	CGCG	3 cut(s)	396, 483, 636
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	753, 873
BtsCI	GGATG	3 cut(s)	724, 949, 1024
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	825
BtuMI	TCGCGA	1 cut(s)	636
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	1 cut(s)	991
CfoI	GCGC	1 cut(s)	882
Cfr13I	GGNCC	4 cut(s)	100, 601, 733, 790
CseI	GACGC	2 cut(s)	13, 905
Csp6I	GTAC	5 cut(s)	157, 227, 353, 392, 606
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	5 cut(s)	157, 227, 353, 392, 606
DdeI	CTNAG	4 cut(s)	378, 738, 883, 1047
EaeI	YGGCCR	2 cut(s)	751, 871
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
Eco130I	CCWWGG	1 cut(s)	386
Eco31I	GGTCTC	3 cut(s)	501, 534, 660
Eco47I	GGWCC	4 cut(s)	100, 601, 733, 790
Eco88I	CYCGRG	1 cut(s)	1116
EcoO109I	RGGNCCY	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	843, 862
EcoT14I	CCWWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	386
FaqI	GGGAC	6 cut(s)	185, 463, 572, 614, 746, 1036
FauI	CCCGC	3 cut(s)	281, 488, 804
FbaI	TGATCA	3 cut(s)	514, 934, 1003
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	3 cut(s)	731, 956, 1031
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	4 cut(s)	135, 504, 702, 1104
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	2 cut(s)	753, 873
HapII	CCGG	2 cut(s)	360, 373
HgaI	GACGC	2 cut(s)	13, 905
HhaI	GCGC	1 cut(s)	882
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HinfI	GANTC	4 cut(s)	50, 147, 773, 1049
HpaII	CCGG	2 cut(s)	360, 373
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	412, 614
Hpy188I	TCNGA	7 cut(s)	28, 104, 330, 379, 794, 886, 1095
Hpy8I	GTNNAC	2 cut(s)	412, 614
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	2 cut(s)	216, 336
HpyCH4III	ACNGT	6 cut(s)	256, 512, 545, 605, 671, 1028
HpyCH4IV	ACGT	2 cut(s)	244, 766
HpyCH4V	TGCA	3 cut(s)	58, 163, 185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	879, 886, 913
HpyF3I	CTNAG	4 cut(s)	378, 738, 883, 1047
HpySE526I	ACGT	2 cut(s)	244, 766
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	880
KflI	GGGWCCC	1 cut(s)	733
Kpn2I	TCCGGA	1 cut(s)	359
Ksp22I	TGATCA	3 cut(s)	514, 934, 1003
LmnI	GCTCC	7 cut(s)	346, 382, 400, 494, 679, 808, 1081
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	4 cut(s)	135, 504, 702, 1104
MaeII	ACGT	2 cut(s)	244, 766
MbiI	CCGCTC	1 cut(s)	811
MboII	GAAGA	7 cut(s)	220, 231, 261, 329, 536, 848, 1025
MfeI	CAATTG	1 cut(s)	938
MlsI	TGGCCA	2 cut(s)	753, 873
MluCI	AATT	3 cut(s)	60, 91, 938
MluNI	TGGCCA	2 cut(s)	753, 873
MlyI	GAGTC	2 cut(s)	59, 1058
MmeI	TCCRAC	2 cut(s)	289, 817
Mox20I	TGGCCA	2 cut(s)	753, 873
Mph1103I	ATGCAT	1 cut(s)	165
MroI	TCCGGA	1 cut(s)	359
MscI	TGGCCA	2 cut(s)	753, 873
MslI	CAYNNNNRTG	4 cut(s)	651, 747, 759, 990
Msp20I	TGGCCA	2 cut(s)	753, 873
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	2 cut(s)	360, 373
MspR9I	CCNGG	3 cut(s)	373, 845, 864
MunI	CAATTG	1 cut(s)	938
MvaI	CCWGG	2 cut(s)	845, 864
MvnI	CGCG	3 cut(s)	396, 483, 636
MwoI	GCNNNNNNNGC	3 cut(s)	879, 886, 913
NciI	CCSGG	1 cut(s)	373
NlaIV	GGNNCC	6 cut(s)	298, 384, 602, 734, 735, 791
NruI	TCGCGA	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	2 cut(s)	163, 410
PagI	TCATGA	1 cut(s)	991
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	147, 773
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	58, 1057
PpsI	GAGTC	2 cut(s)	58, 1057
PpuMI	RGGWCCY	1 cut(s)	733
PscI	ACATGT	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	2 cut(s)	843, 862
PspGI	CCWGG	2 cut(s)	843, 862
PspN4I	GGNNCC	6 cut(s)	298, 384, 602, 734, 735, 791
PspPI	GGNCC	4 cut(s)	100, 601, 733, 790
PspPPI	RGGWCCY	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	890
PvuII	CAGCTG	1 cut(s)	1046
RruI	TCGCGA	1 cut(s)	636
RsaI	GTAC	5 cut(s)	158, 228, 354, 393, 607
RsaNI	GTAC	5 cut(s)	157, 227, 353, 392, 606
RseI	CAYNNNNRTG	4 cut(s)	651, 747, 759, 990
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	4 cut(s)	100, 601, 733, 790
SchI	GAGTC	2 cut(s)	59, 1058
ScrFI	CCNGG	3 cut(s)	373, 845, 864
SinI	GGWCC	4 cut(s)	100, 601, 733, 790
SmiMI	CAYNNNNRTG	4 cut(s)	651, 747, 759, 990
Sse9I	AATT	3 cut(s)	60, 91, 938
SsiI	CCGC	5 cut(s)	274, 481, 811, 964, 997
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	4 cut(s)	135, 504, 702, 1104
StyD4I	CCNGG	3 cut(s)	371, 843, 862
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	6 cut(s)	256, 512, 545, 605, 671, 1028
TaiI	ACGT	2 cut(s)	247, 769
TaqI	TCGA	1 cut(s)	658
TasI	AATT	3 cut(s)	60, 91, 938
TatI	WGTACW	2 cut(s)	156, 352
TfiI	GAWTC	2 cut(s)	147, 773
TscAI	CASTG	1 cut(s)	832
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	139, 191, 738, 777, 1047
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	4 cut(s)	100, 601, 733, 790
XapI	RAATTY	2 cut(s)	60, 91
XbaI	TCTAGA	3 cut(s)	503, 701, 1103
XceI	RCATGY	2 cut(s)	163, 410
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	4 cut(s)	135, 504, 702, 1104
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.