Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Forward (+)

79328799 .. 79333687

Gene Structure 4889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGGCGACTACAGCGATGCCTTCATGCGCAACAACGCCGCCGTTCAGGCCAAGACCAAGGCCCAGAACCGCGCTAATGTCCTCCAGCTCAAACTGATTGGGCAGAGCCACCCCACTGGTTTAACAACCAATCTTTTGAAGCTCTTCGAGCCTCGTCCGCCGTTGGATTTTAAGCCTCCTCCTGAGAAAAGAAAGTGCCCGCCGCTGACAGGGATAGCACAGTATGTGAGTAATTTTGCTGAGCCGGGGGATCCCCAGTATACTGCACCTGTCGAAAAGGGAGAAACTCCTGCACAAAGAAGGGCTCGAATACACCAGTTAAGACTTGAGAAGGGTGCAGCAAAGGCCGCGGAGGAGCTAGAGAAATATGATCCAAATAGTGATCCAAATATTTCTGGAGATCCATACAAGACTTTGTTTGTTGCTAGACTCAATTACGAGACAACTGAGAGCAGACTTAAAAGGGAATTTGACGCTTATGGTCCAATCAAAAGGGTAGGTGTTTTTCTGAGCAACCCCAAGGGGGTTCGCTTTCTCTTTGTTATGGTTCAGTTTAGAGATGTTGGAAAAGAATGGGTGTTTCTAGTTGAGCAGACCAGTTATGCTTATGTCAAGCAACAAAAGGAGACCACAACTTCTGTTCTGTTTCCTGCACTGGGTAAACATGTCGGGAGTATTAGTATCTCTTCCTCTGAATTTTTAGTACGTGCATTTTCTGCTGCTAAAAGTTTTACTTTGGCTATAAAGGTTCGATTGGTCACCGACAAAGAGTCAAATAAACCTAGAGGCTATGCATTCATAGAATACATGCATACCCGGGACATGAAAGCTGCATACAAGCAAGCTGATGGGAAGAAAATTGAAGGTAGAAGGGTGCTTGTAGATGTGGAACGTGGTAGAACAGTACCAAACTGGCGACCTCGGCGACTGGGTGGTGGTCTTGGAACCACCAGAGTCGGTGGTGAAGAAGTTAATCAGAGACATTCAGGGAGGGAGCAAGCACAATCAGGAGGACCATCCCGGTCTGAGGAGCCAAGGGTACGCGAGGAGCGACATGTAGACCTGGAGGATAGGCATCACAGGGACCGTGATAGAACCAGGGATAGAGACAGGGAAAGGGAAAGGGACAGTCGTCGTGATCGTGATCGTGGAAGGGACCGAGGAAGGGATCGTGGTCGCGACTATGAGCGTGATCGCGATAGAGACCGTGACCGGGAGCGAGATCGCCCTCGAGAGAGGGAGAGGGATTATGAGGTTGGGTTACCGGATCATGATCGTGGCCGTTCACGTGATAAAGAGTCTGATTTTGACCGTGTTGAATCAAAACACGGGAGGGACAGGCATGGAGAAAGGGAGCGTGATTATGATCCTGCTGCCCCAGAAGATGACCAGGCTTGGTTTGACCAACCTGAACATGGCCATAGGCACTCAGACCCTGACCATGATCCTGAGCACTATGAGCGTCGTCGAAGCCAGTATGATGATCATATGGATGCCGAGCATGACCATGACCGCTACAAACAGTATCCCGATCGCTATGATGATCGAATGGAGGATGATGACTACAATTATGAACAAGCACCAGTTGAATCACGTGAGAGAGAGAGAAGTGGAGATGTGGAGCGTGATTATCAGCGTTCTGCGAGATCAATTTCTCGGGAGTATGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

557

Amino Acids

65.46

Weight (kDa)

8.26

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U1snRNP70_N	PF12220	40 - 128	2e-19	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
RRM_1	PF00076	249 - 292	4.5e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	29
AccI	GTMKAC	2 cut(s)	260, 1059
AccII	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
AciI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 348, 350, 1513
AclWI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1176, 1275, 1361, 1439
AcoI	YGGCCR	2 cut(s)	1279, 1417
AcsI	RAATTY	2 cut(s)	467, 695
AcvI	CACGTG	2 cut(s)	1289, 1595
AfaI	GTAC	3 cut(s)	705, 906, 1041
AfiI	CCNNNNNNNGG	7 cut(s)	209, 523, 656, 1027, 1165, 1213, 1415
AflIII	ACRYGT	2 cut(s)	664, 1054
AgsI	TTSAA	4 cut(s)	139, 863, 1319, 1589
AhdI	GACNNNNNGTC	1 cut(s)	769
AjnI	CCWGG	3 cut(s)	1062, 1097, 1389
AluBI	AGCT	5 cut(s)	88, 142, 358, 830, 845
AluI	AGCT	5 cut(s)	88, 142, 358, 830, 845
Alw21I	GWGCWC	1 cut(s)	1455
Alw26I	GTCTC	5 cut(s)	434, 620, 973, 1101, 1197
AlwI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1176, 1275, 1361, 1439
AlwNI	CAGNNNCTG	1 cut(s)	1436
Ama87I	CYCGRG	3 cut(s)	816, 1230, 1656
AoxI	GGCC	5 cut(s)	48, 60, 345, 1279, 1417
ApeKI	GCWGC	4 cut(s)	338, 719, 830, 1373
ApoI	RAATTY	2 cut(s)	467, 695
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	30, 74
AspS9I	GGNCC	5 cut(s)	61, 482, 1013, 1084, 1156
AsuC2I	CCSGG	5 cut(s)	246, 817, 818, 1021, 1214
AsuHPI	GGTGA	2 cut(s)	751, 974
AvaI	CYCGRG	3 cut(s)	816, 1230, 1656
AvaII	GGWCC	4 cut(s)	482, 1013, 1084, 1156
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	1419
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	307
BbrPI	CACGTG	2 cut(s)	1289, 1595
Bbv12I	GWGCWC	1 cut(s)	1455
BbvI	GCAGC	4 cut(s)	350, 706, 817, 1360
BccI	CCATC	2 cut(s)	842, 1024
BceAI	ACGGC	3 cut(s)	26, 145, 1266
BciT130I	CCWGG	3 cut(s)	1064, 1099, 1391
BciVI	GTATCC	1 cut(s)	1536
BclI	TGATCA	1 cut(s)	1483
BcnI	CCSGG	5 cut(s)	246, 817, 818, 1021, 1214
BcoDI	GTCTC	5 cut(s)	434, 620, 973, 1101, 1197
BfaI	CTAG	4 cut(s)	359, 426, 584, 783
BfmI	CTRYAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	1536
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	7 cut(s)	39, 203, 339, 348, 720, 831, 1374
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	40, 204, 340, 349, 721, 832, 1375
Bme1390I	CCNGG	8 cut(s)	246, 817, 818, 1021, 1064, 1099, 1214, 1391
Bme18I	GGWCC	4 cut(s)	482, 1013, 1084, 1156
BmeRI	GACNNNNNGTC	1 cut(s)	769
BmeT110I	CYCGRG	3 cut(s)	816, 1230, 1656
BmgT120I	GGNCC	5 cut(s)	61, 482, 1013, 1084, 1156
BmiI	GGNNCC	5 cut(s)	252, 946, 1032, 1085, 1157
BmrFI	CCNGG	8 cut(s)	246, 817, 818, 1021, 1064, 1099, 1214, 1391
BmrI	ACTGGG	3 cut(s)	250, 665, 938
BmsI	GCATC	3 cut(s)	7, 1084, 1483
BmuI	ACTGGG	3 cut(s)	250, 665, 938
BoxI	GACNNNNGTC	1 cut(s)	1131
BpmI	CTGGAG	3 cut(s)	68, 417, 1085
Bpu10I	CCTNAGC	1 cut(s)	1449
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	5 cut(s)	246, 817, 818, 1021, 1214
BsaAI	YACGTR	3 cut(s)	707, 1289, 1595
BsaBI	GATNNNNATC	4 cut(s)	1074, 1143, 1272, 1365
BsaI	GGTCTC	2 cut(s)	620, 1197
BsaJI	CCNNGG	9 cut(s)	57, 245, 348, 519, 816, 920, 1034, 1098, 1159
BsaWI	WCCGGW	1 cut(s)	1264
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	7 cut(s)	209, 523, 656, 1027, 1165, 1213, 1415
Bse1I	ACTGG	9 cut(s)	121, 256, 316, 597, 660, 917, 933, 1474, 1583
Bse8I	GATNNNNATC	4 cut(s)	1074, 1143, 1272, 1365
BseBI	CCWGG	3 cut(s)	1064, 1099, 1391
BseDI	CCNNGG	9 cut(s)	57, 245, 348, 519, 816, 920, 1034, 1098, 1159
BseGI	GGATG	3 cut(s)	1016, 1498, 1561
BseJI	GATNNNNATC	4 cut(s)	1074, 1143, 1272, 1365
BseLI	CCNNNNNNNGG	7 cut(s)	209, 523, 656, 1027, 1165, 1213, 1415
BseMII	CTCAG	7 cut(s)	174, 231, 438, 500, 1017, 1440, 1443
BseNI	ACTGG	9 cut(s)	121, 256, 316, 597, 660, 917, 933, 1474, 1583
BseRI	GAGGAG	4 cut(s)	168, 368, 1043, 1061
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	350, 706, 817, 1360
BsgI	GTGCAG	4 cut(s)	249, 276, 357, 636
Bsh1236I	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
Bsh1285I	CGRYCG	1 cut(s)	1534
BshFI	GGCC	5 cut(s)	50, 62, 347, 1281, 1419
BsiEI	CGRYCG	1 cut(s)	1534
BsiHKAI	GWGCWC	1 cut(s)	1455
BsiHKCI	CYCGRG	3 cut(s)	816, 1230, 1656
BsiSI	CCGG	5 cut(s)	245, 817, 1021, 1213, 1265
BslFI	GGGAC	5 cut(s)	833, 1097, 1139, 1169, 1349
BslI	CCNNNNNNNGG	7 cut(s)	209, 523, 656, 1027, 1165, 1213, 1415
BsmAI	GTCTC	5 cut(s)	434, 620, 973, 1101, 1197
BsmFI	GGGAC	5 cut(s)	833, 1097, 1139, 1169, 1349
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	5 cut(s)	50, 62, 347, 1281, 1419
Bso31I	GGTCTC	2 cut(s)	620, 1197
BsoBI	CYCGRG	3 cut(s)	816, 1230, 1656
Bsp1286I	GDGCHC	3 cut(s)	200, 307, 1455
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp68I	TCGCGA	2 cut(s)	1179, 1197
BspACI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 348, 350, 1513
BspANI	GGCC	5 cut(s)	50, 62, 347, 1281, 1419
BspCNI	CTCAG	7 cut(s)	175, 232, 439, 501, 1018, 1441, 1442
BspFNI	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
BspHI	TCATGA	1 cut(s)	1270
BspLI	GGNNCC	5 cut(s)	252, 946, 1032, 1085, 1157
BspPI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1176, 1275, 1361, 1439
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	620, 1197
BsrI	ACTGG	9 cut(s)	121, 256, 316, 597, 660, 917, 933, 1474, 1583
BssECI	CCNNGG	9 cut(s)	57, 245, 348, 519, 816, 920, 1034, 1098, 1159
BssNAI	GTATAC	1 cut(s)	261
BssT1I	CCWWGG	3 cut(s)	57, 519, 1034
Bst1107I	GTATAC	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	1064, 1099, 1391
Bst4CI	ACNGT	7 cut(s)	222, 904, 1088, 1130, 1208, 1313, 1524
Bst6I	CTCTTC	2 cut(s)	149, 691
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstBAI	YACGTR	3 cut(s)	707, 1289, 1595
BstC8I	GCNNGC	3 cut(s)	200, 843, 999
BstDEI	CTNAG	7 cut(s)	183, 240, 447, 509, 1026, 1429, 1449
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	2 cut(s)	757, 1260
BstF5I	GGATG	3 cut(s)	1016, 1498, 1561
BstFNI	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
BstHHI	GCGC	2 cut(s)	30, 74
BstMAI	GTCTC	5 cut(s)	434, 620, 973, 1101, 1197
BstMCI	CGRYCG	1 cut(s)	1534
BstMWI	GCNNNNNNNGC	9 cut(s)	12, 47, 148, 157, 344, 347, 716, 922, 1459
BstNI	CCWGG	3 cut(s)	1064, 1099, 1391
BstNSI	RCATGY	3 cut(s)	668, 811, 1058
BstPAI	GACNNNNGTC	1 cut(s)	1131
BstPI	GGTNACC	2 cut(s)	757, 1260
BstSCI	CCNGG	8 cut(s)	244, 815, 816, 1019, 1062, 1097, 1212, 1389
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	200
BstUI	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
BstV1I	GCAGC	4 cut(s)	350, 706, 817, 1360
BstX2I	RGATCY	2 cut(s)	250, 400
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	2 cut(s)	250, 400
BstZ17I	GTATAC	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	1536
BsuRI	GGCC	5 cut(s)	50, 62, 347, 1281, 1419
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	1016, 1498, 1561
BtsIMutI	CAGTG	2 cut(s)	114, 653
BtuMI	TCGCGA	2 cut(s)	1179, 1197
Cac8I	GCNNGC	3 cut(s)	200, 843, 999
CaiI	CAGNNNCTG	1 cut(s)	1436
CciI	TCATGA	1 cut(s)	1270
CfoI	GCGC	2 cut(s)	30, 74
Cfr13I	GGNCC	5 cut(s)	61, 482, 1013, 1084, 1156
Cfr42I	CCGCGG	1 cut(s)	351
Cfr9I	CCCGGG	1 cut(s)	816
CseI	GACGC	2 cut(s)	482, 1451
Csp6I	GTAC	3 cut(s)	704, 905, 1040
CviQI	GTAC	3 cut(s)	704, 905, 1040
DdeI	CTNAG	7 cut(s)	183, 240, 447, 509, 1026, 1429, 1449
DriI	GACNNNNNGTC	1 cut(s)	769
EaeI	YGGCCR	2 cut(s)	1279, 1417
Eam1104I	CTCTTC	2 cut(s)	149, 691
Eam1105I	GACNNNNNGTC	1 cut(s)	769
EarI	CTCTTC	2 cut(s)	149, 691
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	57, 519, 1034
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	2 cut(s)	620, 1197
Eco47I	GGWCC	4 cut(s)	482, 1013, 1084, 1156
Eco72I	CACGTG	2 cut(s)	1289, 1595
Eco88I	CYCGRG	3 cut(s)	816, 1230, 1656
Eco91I	GGTNACC	2 cut(s)	757, 1260
EcoO65I	GGTNACC	2 cut(s)	757, 1260
EcoRII	CCWGG	3 cut(s)	1062, 1097, 1389
EcoT14I	CCWWGG	3 cut(s)	57, 519, 1034
EcoT22I	ATGCAT	2 cut(s)	796, 813
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	3 cut(s)	57, 519, 1034
FalI	AAGNNNNNCTT	2 cut(s)	718, 750
FaqI	GGGAC	5 cut(s)	833, 1097, 1139, 1169, 1349
FauI	CCCGC	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	1488
FbaI	TGATCA	1 cut(s)	1483
FblI	GTMKAC	2 cut(s)	260, 1059
Fnu4HI	GCNGC	7 cut(s)	39, 203, 339, 348, 720, 831, 1374
FokI	GGATG	3 cut(s)	1003, 1505, 1568
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	7 cut(s)	39, 203, 339, 348, 720, 831, 1374
FspBI	CTAG	4 cut(s)	359, 426, 584, 783
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	2 cut(s)	29, 73
GluI	GCNGC	7 cut(s)	39, 203, 339, 348, 720, 831, 1374
GsuI	CTGGAG	3 cut(s)	68, 417, 1085
HaeIII	GGCC	5 cut(s)	50, 62, 347, 1281, 1419
HapII	CCGG	5 cut(s)	245, 817, 1021, 1213, 1265
HgaI	GACGC	2 cut(s)	482, 1451
HhaI	GCGC	2 cut(s)	30, 74
Hin6I	GCGC	2 cut(s)	28, 72
HinP1I	GCGC	2 cut(s)	28, 72
HinfI	GANTC	6 cut(s)	429, 770, 954, 1298, 1319, 1589
HpaII	CCGG	5 cut(s)	245, 817, 1021, 1213, 1265
HphI	GGTGA	2 cut(s)	751, 974
Hpy166II	GTNNAC	4 cut(s)	261, 662, 1060, 1286
Hpy188I	TCNGA	6 cut(s)	510, 694, 978, 1027, 1303, 1432
Hpy8I	GTNNAC	4 cut(s)	261, 662, 1060, 1286
Hpy99I	CGWCG	3 cut(s)	1137, 1467, 1470
HpyAV	CCTTC	7 cut(s)	31, 294, 325, 857, 864, 1146, 1158
HpyCH4III	ACNGT	7 cut(s)	222, 904, 1088, 1130, 1208, 1313, 1524
HpyCH4IV	ACGT	4 cut(s)	706, 892, 1288, 1594
HpyCH4V	TGCA	8 cut(s)	266, 293, 338, 653, 710, 794, 811, 833
HpyF10VI	GCNNNNNNNGC	9 cut(s)	12, 47, 148, 157, 344, 347, 716, 922, 1459
HpyF3I	CTNAG	7 cut(s)	183, 240, 447, 509, 1026, 1429, 1449
HpySE526I	ACGT	4 cut(s)	706, 892, 1288, 1594
HspAI	GCGC	2 cut(s)	28, 72
Ksp22I	TGATCA	1 cut(s)	1483
KspI	CCGCGG	1 cut(s)	351
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	7 cut(s)	355, 994, 1030, 1048, 1216, 1354, 1621
Lsp1109I	GCAGC	4 cut(s)	350, 706, 817, 1360
LweI	GCATC	3 cut(s)	7, 1084, 1483
MaeI	CTAG	4 cut(s)	359, 426, 584, 783
MaeII	ACGT	4 cut(s)	706, 892, 1288, 1594
MaeIII	GTNAC	3 cut(s)	757, 1208, 1260
MboII	GAAGA	5 cut(s)	136, 678, 865, 977, 1394
MflI	RGATCY	2 cut(s)	250, 400
MhlI	GDGCHC	3 cut(s)	200, 307, 1455
MlsI	TGGCCA	1 cut(s)	1419
MluCI	AATT	7 cut(s)	232, 433, 467, 695, 858, 1567, 1650
MluNI	TGGCCA	1 cut(s)	1419
MlyI	GAGTC	4 cut(s)	423, 779, 963, 1307
MmeI	TCCRAC	2 cut(s)	144, 544
Mox20I	TGGCCA	1 cut(s)	1419
Mph1103I	ATGCAT	2 cut(s)	796, 813
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	1419
MseI	TTAA	5 cut(s)	122, 171, 320, 459, 972
MslI	CAYNNNNRTG	3 cut(s)	1275, 1491, 1506
Msp20I	TGGCCA	1 cut(s)	1419
MspA1I	CMGCKG	2 cut(s)	205, 350
MspI	CCGG	5 cut(s)	245, 817, 1021, 1213, 1265
MspR9I	CCNGG	8 cut(s)	246, 817, 818, 1021, 1064, 1099, 1214, 1391
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	3 cut(s)	1064, 1099, 1391
MvnI	CGCG	5 cut(s)	72, 350, 1044, 1179, 1197
MwoI	GCNNNNNNNGC	9 cut(s)	12, 47, 148, 157, 344, 347, 716, 922, 1459
NciI	CCSGG	5 cut(s)	246, 817, 818, 1021, 1214
NdeI	CATATG	1 cut(s)	1488
NlaIV	GGNNCC	5 cut(s)	252, 946, 1032, 1085, 1157
NmeAIII	GCCGAG	2 cut(s)	901, 1522
NmuCI	GTSAC	2 cut(s)	757, 1208
NruI	TCGCGA	2 cut(s)	1179, 1197
NsbI	TGCGCA	1 cut(s)	29
NsiI	ATGCAT	2 cut(s)	796, 813
NspI	RCATGY	3 cut(s)	668, 811, 1058
PaeR7I	CTCGAG	1 cut(s)	1230
PagI	TCATGA	1 cut(s)	1270
PciI	ACATGT	2 cut(s)	664, 1054
PciSI	GCTCTTC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	1048, 1138
PctI	GAATGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	1319, 1589
PkrI	GCNGC	7 cut(s)	40, 204, 340, 349, 721, 832, 1375
Ple19I	CGATCG	1 cut(s)	1534
PleI	GAGTC	4 cut(s)	423, 778, 962, 1306
PmaCI	CACGTG	2 cut(s)	1289, 1595
PmlI	CACGTG	2 cut(s)	1289, 1595
PpsI	GAGTC	4 cut(s)	423, 778, 962, 1306
Ppu21I	YACGTR	3 cut(s)	707, 1289, 1595
PscI	ACATGT	2 cut(s)	664, 1054
PshAI	GACNNNNGTC	1 cut(s)	1131
Psp6I	CCWGG	3 cut(s)	1062, 1097, 1389
PspCI	CACGTG	2 cut(s)	1289, 1595
PspEI	GGTNACC	2 cut(s)	757, 1260
PspGI	CCWGG	3 cut(s)	1062, 1097, 1389
PspN4I	GGNNCC	5 cut(s)	252, 946, 1032, 1085, 1157
PspPI	GGNCC	5 cut(s)	61, 482, 1013, 1084, 1156
PstNI	CAGNNNCTG	1 cut(s)	1436
PsuI	RGATCY	2 cut(s)	250, 400
PvuI	CGATCG	1 cut(s)	1534
RruI	TCGCGA	2 cut(s)	1179, 1197
RsaI	GTAC	3 cut(s)	705, 906, 1041
RsaNI	GTAC	3 cut(s)	704, 905, 1040
RseI	CAYNNNNRTG	3 cut(s)	1275, 1491, 1506
SacII	CCGCGG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	122, 171, 320, 459, 972
SatI	GCNGC	7 cut(s)	39, 203, 339, 348, 720, 831, 1374
Sau96I	GGNCC	5 cut(s)	61, 482, 1013, 1084, 1156
SchI	GAGTC	4 cut(s)	423, 779, 963, 1307
ScrFI	CCNGG	8 cut(s)	246, 817, 818, 1021, 1064, 1099, 1214, 1391
SduI	GDGCHC	3 cut(s)	200, 307, 1455
SfaNI	GCATC	3 cut(s)	7, 1084, 1483
SfcI	CTRYAG	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	1230
Sfr303I	CCGCGG	1 cut(s)	351
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	4 cut(s)	482, 1013, 1084, 1156
SlaI	CTCGAG	1 cut(s)	1230
SmaI	CCCGGG	1 cut(s)	818
SmiMI	CAYNNNNRTG	3 cut(s)	1275, 1491, 1506
SmlI	CTYRAG	2 cut(s)	326, 1230
SmoI	CTYRAG	2 cut(s)	326, 1230
Sse9I	AATT	7 cut(s)	232, 433, 467, 695, 858, 1567, 1650
SsiI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 348, 350, 1513
SspI	AATATT	2 cut(s)	391, 1670
SspMI	CTAG	4 cut(s)	359, 426, 584, 783
StyD4I	CCNGG	8 cut(s)	244, 815, 816, 1019, 1062, 1097, 1212, 1389
StyI	CCWWGG	3 cut(s)	57, 519, 1034
TaaI	ACNGT	7 cut(s)	222, 904, 1088, 1130, 1208, 1313, 1524
TaiI	ACGT	4 cut(s)	709, 895, 1291, 1597
TaqI	TCGA	7 cut(s)	147, 273, 307, 751, 1231, 1468, 1546
TaqII	GACCGA	1 cut(s)	1173
TasI	AATT	7 cut(s)	232, 433, 467, 695, 858, 1567, 1650
TauI	GCSGC	3 cut(s)	41, 205, 350
TfiI	GAWTC	2 cut(s)	1319, 1589
Tru1I	TTAA	5 cut(s)	122, 171, 320, 459, 972
Tru9I	TTAA	5 cut(s)	122, 171, 320, 459, 972
TscAI	CASTG	2 cut(s)	121, 660
TseFI	GTSAC	2 cut(s)	757, 1208
TseI	GCWGC	4 cut(s)	338, 719, 830, 1373
Tsp45I	GTSAC	2 cut(s)	757, 1208
TspDTI	ATGAA	4 cut(s)	13, 787, 839, 1587
TspMI	CCCGGG	1 cut(s)	816
TspRI	CASTG	2 cut(s)	121, 660
VpaK11BI	GGWCC	4 cut(s)	482, 1013, 1084, 1156
XapI	RAATTY	2 cut(s)	467, 695
XceI	RCATGY	3 cut(s)	668, 811, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1412
XhoI	CTCGAG	1 cut(s)	1230
XmaI	CCCGGG	1 cut(s)	816
XmiI	GTMKAC	2 cut(s)	260, 1059
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	4 cut(s)	359, 426, 584, 783
Zsp2I	ATGCAT	2 cut(s)	796, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.