Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8344586 .. 8348471

Gene Structure 3886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11780.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGAGACTTCAACAACGATGCTTTCATGCGCGGCCAAAACGCCGCCGTTCAGGGCCGAACCAAGGCCCAGAACCGCCAAAATGTTCTTCAGCTCAAGATGATTGGGCAGAGCCACCCCACTGGTCTAACAACCAACCTTTTAAAGCTGTTTGAGCCTCGACCGCCGTTGGATTTCAAACCGCCTCCGGAGAAGAAAAAGTGCCCACCTTTGACAGGGGTAGCGCAATTTGTGAGTAAGTTTGCGGAGCCTGGAGATCCTGAGTATAATCCGCCTGTCCGAAAGGGCGAAACTCCTACACAAAGAAGGGCTCGAATACACCAGTTAAGGCTTGAGAAGGGTGCAGCAAAGGCTGCGGAAGAGTTAGAGAAATATGATCCGAATAATGACCCGAGTATTTCTGGAGATCCATACAAGACTTTGTTTGTTGCTAGGCTCAATTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGACGTTTATGGTCCAATCAAGCGGCTGTATGATTTAAAGGTTCGATTGGTCACTGACAAAGAAACAAATAAACCTAGAGGCTATGGATTCATTGAATACATGCATACAAGGGACATGAAAGCTGCATACAAACAAGCTGATGGGAGGAAAATTGAGGGAAGAAGGGTACTTGTTGATGTTGAACGTGGTAGAACAGTTCCTAATTGGCGACCCCGCCGACTGGGTGGTGGGCTTGGAACTACCAGAGTTGGAGGTGAAGATGTCAATCAGAGATATTCTGGAAGGGAGCAAGTACAATCTGGAGGACAACCCCGGTCTGAGGAGCCAAGGGCACGCGAGGAGCGACATGTAGACTTGGATAGAGAAAAATCCCGTGAAAGAGGAAAAGAGAAAGAAAAGGAAAGAGAACGGGAGAAGTCCCGCGAGCGCTCTCGTGAACGCTCCCATGACAAGTCTAGAGATCGTGATCACAGAGAAGATAGGCACCACAGAGATCGTGATAGAAACAGGGACAAGGACAGGGATAGGGAAAGAGATCGTGGTGGTCGTGATCGGGATCGTACTCGTGAACGAGGACGGGATCGTGGTCGGGACTATGAGCATGGTCGTGATCGAGACAGAGACCGTGATCGGGAGCGTGATCGATCATCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

378

Amino Acids

44.46

Weight (kDa)

10.08

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	960
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	3 cut(s)	33, 813, 900
AccIII	TCCGGA	1 cut(s)	187
AclWI	GGATC	5 cut(s)	251, 371, 401, 1041, 1065
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	3 cut(s)	645, 771, 1039
AfeI	AGCGCT	1 cut(s)	905
AfiI	CCNNNNNNNGG	5 cut(s)	64, 215, 697, 796, 1108
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	4 cut(s)	13, 178, 572, 659
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	94, 148, 599, 614
AluI	AGCT	4 cut(s)	94, 148, 599, 614
Alw26I	GTCTC	3 cut(s)	440, 1086, 1092
AlwI	GGATC	5 cut(s)	251, 371, 401, 1041, 1065
Ama87I	CYCGRG	1 cut(s)	391
Aor13HI	TCCGGA	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	905
AoxI	GGCC	3 cut(s)	34, 55, 66
ApeKI	GCWGC	3 cut(s)	344, 353, 599
AspLEI	GCGC	3 cut(s)	33, 226, 906
AspS9I	GGNCC	3 cut(s)	55, 67, 488
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	2 cut(s)	206, 811
BanI	GGYRCC	1 cut(s)	960
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	2 cut(s)	909, 1041
BbvI	GCAGC	3 cut(s)	340, 356, 586
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	2 cut(s)	32, 151
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	943
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	440, 1086, 1092
BfaI	CTAG	4 cut(s)	432, 552, 933, 1132
BfoI	RGCGCY	1 cut(s)	907
BisI	GCNGC	6 cut(s)	34, 45, 345, 354, 500, 600
BlsI	GCNGC	6 cut(s)	35, 46, 346, 355, 501, 601
Bme1390I	CCNGG	2 cut(s)	252, 790
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	3 cut(s)	55, 67, 488
BmiI	GGNNCC	3 cut(s)	249, 801, 962
BmrFI	CCNGG	2 cut(s)	252, 790
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	707
BpmI	CTGGAG	3 cut(s)	273, 423, 798
BpuEI	CTTGAG	2 cut(s)	80, 353
BpuMI	CCSGG	1 cut(s)	790
Bsa29I	ATCGAT	1 cut(s)	1120
BsaBI	GATNNNNATC	3 cut(s)	741, 942, 1032
BsaI	GGTCTC	1 cut(s)	1092
BsaJI	CCNNGG	3 cut(s)	63, 788, 803
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 215, 697, 796, 1108
Bse1I	ACTGG	3 cut(s)	127, 322, 702
Bse8I	GATNNNNATC	3 cut(s)	741, 942, 1032
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	1120
BseDI	CCNNGG	3 cut(s)	63, 788, 803
BseJI	GATNNNNATC	3 cut(s)	741, 942, 1032
BseLI	CCNNNNNNNGG	5 cut(s)	64, 215, 697, 796, 1108
BseMII	CTCAG	3 cut(s)	252, 444, 786
BseNI	ACTGG	3 cut(s)	127, 322, 702
BseRI	GAGGAG	2 cut(s)	812, 830
BseSI	GKGCMC	2 cut(s)	206, 811
BseXI	GCAGC	3 cut(s)	340, 356, 586
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	3 cut(s)	33, 813, 900
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	36, 57, 68
BshNI	GGYRCC	1 cut(s)	960
BshVI	ATCGAT	1 cut(s)	1120
BsiEI	CGRYCG	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	188, 790
BslFI	GGGAC	4 cut(s)	602, 880, 1001, 1082
BslI	CCNNNNNNNGG	5 cut(s)	64, 215, 697, 796, 1108
BsmAI	GTCTC	3 cut(s)	440, 1086, 1092
BsmFI	GGGAC	4 cut(s)	602, 880, 1001, 1082
BsnI	GGCC	3 cut(s)	36, 57, 68
Bso31I	GGTCTC	1 cut(s)	1092
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	3 cut(s)	206, 313, 811
Bsp13I	TCCGGA	1 cut(s)	187
BspANI	GGCC	3 cut(s)	36, 57, 68
BspCNI	CTCAG	3 cut(s)	253, 445, 787
BspDI	ATCGAT	1 cut(s)	1120
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	3 cut(s)	33, 813, 900
BspLI	GGNNCC	3 cut(s)	249, 801, 962
BspPI	GGATC	5 cut(s)	251, 371, 401, 1041, 1065
BspT107I	GGYRCC	1 cut(s)	960
BspTNI	GGTCTC	1 cut(s)	1092
BsrI	ACTGG	3 cut(s)	127, 322, 702
BssECI	CCNNGG	3 cut(s)	63, 788, 803
BssSI	CACGAG	2 cut(s)	909, 1041
BssT1I	CCWWGG	2 cut(s)	63, 803
Bst2BI	CACGAG	2 cut(s)	909, 1041
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	673, 1103
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	811, 902
BstDEI	CTNAG	3 cut(s)	261, 453, 795
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstFNI	CGCG	3 cut(s)	33, 813, 900
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	3 cut(s)	33, 226, 906
BstMAI	GTCTC	3 cut(s)	440, 1086, 1092
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 350, 353
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	580, 827
BstSCI	CCNGG	2 cut(s)	250, 788
BstSLI	GKGCMC	2 cut(s)	206, 811
BstUI	CGCG	3 cut(s)	33, 813, 900
BstV1I	GCAGC	3 cut(s)	340, 356, 586
BstX2I	RGATCY	2 cut(s)	256, 406
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	2 cut(s)	256, 406
Bsu15I	ATCGAT	1 cut(s)	1120
BsuRI	GGCC	3 cut(s)	36, 57, 68
BsuTUI	ATCGAT	1 cut(s)	1120
BtgZI	GCGATG	1 cut(s)	1110
BtsIMutI	CAGTG	2 cut(s)	120, 528
Cac8I	GCNNGC	2 cut(s)	811, 902
CfoI	GCGC	3 cut(s)	33, 226, 906
Cfr13I	GGNCC	3 cut(s)	55, 67, 488
ClaI	ATCGAT	1 cut(s)	1120
Csp6I	GTAC	3 cut(s)	644, 770, 1038
CviAII	CATG	6 cut(s)	28, 577, 592, 824, 923, 1079
CviQI	GTAC	3 cut(s)	644, 770, 1038
DdeI	CTNAG	3 cut(s)	261, 453, 795
DraI	TTTAAA	2 cut(s)	144, 513
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	63, 803
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	1092
Eco47I	GGWCC	1 cut(s)	488
Eco47III	AGCGCT	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	63, 803
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	63, 803
FaeI	CATG	6 cut(s)	31, 580, 595, 827, 926, 1082
FaqI	GGGAC	4 cut(s)	602, 880, 1001, 1082
FatI	CATG	6 cut(s)	27, 576, 591, 823, 922, 1078
FauI	CCCGC	2 cut(s)	698, 905
FbaI	TGATCA	1 cut(s)	943
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	6 cut(s)	34, 45, 345, 354, 500, 600
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	34, 45, 345, 354, 500, 600
FspBI	CTAG	4 cut(s)	432, 552, 933, 1132
GlaI	GCGC	3 cut(s)	32, 225, 905
GluI	GCNGC	6 cut(s)	34, 45, 345, 354, 500, 600
GsuI	CTGGAG	3 cut(s)	273, 423, 798
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	3 cut(s)	36, 57, 68
HapII	CCGG	2 cut(s)	188, 790
HhaI	GCGC	3 cut(s)	33, 226, 906
Hin1II	CATG	6 cut(s)	31, 580, 595, 827, 926, 1082
Hin6I	GCGC	3 cut(s)	31, 224, 904
HinP1I	GCGC	3 cut(s)	31, 224, 904
HinfI	GANTC	2 cut(s)	462, 564
HpaII	CCGG	2 cut(s)	188, 790
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	3 cut(s)	829, 914, 1046
Hpy188I	TCNGA	4 cut(s)	281, 381, 747, 796
Hpy8I	GTNNAC	3 cut(s)	829, 914, 1046
HpyAV	CCTTC	4 cut(s)	300, 331, 633, 753
HpyCH4III	ACNGT	2 cut(s)	673, 1103
HpyCH4IV	ACGT	2 cut(s)	480, 661
HpyCH4V	TGCA	3 cut(s)	344, 580, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 350, 353
HpyF3I	CTNAG	3 cut(s)	261, 453, 795
HpySE526I	ACGT	2 cut(s)	480, 661
Hsp92II	CATG	6 cut(s)	31, 580, 595, 827, 926, 1082
HspAI	GCGC	3 cut(s)	31, 224, 904
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	943
LmnI	GCTCC	6 cut(s)	247, 763, 799, 817, 923, 1111
Lsp1109I	GCAGC	3 cut(s)	340, 356, 586
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	4 cut(s)	432, 552, 933, 1132
MaeII	ACGT	2 cut(s)	480, 661
MaeIII	GTNAC	1 cut(s)	526
MboII	GAAGA	6 cut(s)	80, 205, 371, 648, 746, 965
MflI	RGATCY	2 cut(s)	256, 406
MhlI	GDGCHC	3 cut(s)	206, 313, 811
MluCI	AATT	4 cut(s)	227, 439, 627, 679
MmeI	TCCRAC	2 cut(s)	150, 706
Mph1103I	ATGCAT	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	3 cut(s)	143, 326, 512
MslI	CAYNNNNRTG	1 cut(s)	1083
MspI	CCGG	2 cut(s)	188, 790
MspR9I	CCNGG	2 cut(s)	252, 790
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	3 cut(s)	33, 813, 900
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 350, 353
NciI	CCSGG	1 cut(s)	790
NlaIII	CATG	6 cut(s)	31, 580, 595, 827, 926, 1082
NlaIV	GGNNCC	3 cut(s)	249, 801, 962
NmuCI	GTSAC	1 cut(s)	526
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	2 cut(s)	580, 827
PciI	ACATGT	1 cut(s)	823
PcsI	WCGNNNNNNNCGW	2 cut(s)	817, 1021
PfeI	GAWTC	2 cut(s)	462, 564
PkrI	GCNGC	6 cut(s)	35, 46, 346, 355, 501, 601
PscI	ACATGT	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	249, 801, 962
PspPI	GGNCC	3 cut(s)	55, 67, 488
PsuI	RGATCY	2 cut(s)	256, 406
RsaI	GTAC	3 cut(s)	645, 771, 1039
RsaNI	GTAC	3 cut(s)	644, 770, 1038
RseI	CAYNNNNRTG	1 cut(s)	1083
SaqAI	TTAA	3 cut(s)	143, 326, 512
SatI	GCNGC	6 cut(s)	34, 45, 345, 354, 500, 600
Sau96I	GGNCC	3 cut(s)	55, 67, 488
ScrFI	CCNGG	2 cut(s)	252, 790
SduI	GDGCHC	3 cut(s)	206, 313, 811
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	1083
SmlI	CTYRAG	2 cut(s)	95, 332
SmoI	CTYRAG	2 cut(s)	95, 332
Sse9I	AATT	4 cut(s)	227, 439, 627, 679
SspMI	CTAG	4 cut(s)	432, 552, 933, 1132
StyD4I	CCNGG	2 cut(s)	250, 788
StyI	CCWWGG	2 cut(s)	63, 803
TaaI	ACNGT	2 cut(s)	673, 1103
TaiI	ACGT	2 cut(s)	483, 664
TaqI	TCGA	5 cut(s)	160, 313, 520, 1090, 1120
TasI	AATT	4 cut(s)	227, 439, 627, 679
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	3 cut(s)	36, 47, 502
TfiI	GAWTC	2 cut(s)	462, 564
Tru1I	TTAA	3 cut(s)	143, 326, 512
Tru9I	TTAA	3 cut(s)	143, 326, 512
TscAI	CASTG	2 cut(s)	127, 535
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	3 cut(s)	344, 353, 599
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	3 cut(s)	16, 556, 608
TspRI	CASTG	2 cut(s)	127, 535
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	932
XceI	RCATGY	2 cut(s)	580, 827
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	4 cut(s)	432, 552, 933, 1132
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.