Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Reverse (-)

13004415 .. 13009974

Gene Structure 5560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGGCGACTACAGCGATGCCTTCATGCGCAACAACGCCGCCGTTCAGGCAAAGACCAAGGCCCAGAACCGCGCTAATGTCCTCCAGCTCAAACTGATTGGGCAGAGCCACCCCACTGGTTTAACAACCAATCTTTTGAAGCTCTTCGAGCCTCGTCCGCCGTTGGATTTTAAGCCTCCTCCTGAGAAAAGAAAGTGCCCGCCGCTGACAGGGATAGCACAGTATGTCAGTAATTTTGCTGAGCCGGGGGATCCCCAGTATACTGCACCTGTCGAAAAGGGAGAAACTCCTGCACAAAGAAGGGCTCGAATACACCAGTTAAGACTTGAGAAGGGTGCAGCAAAGGCCACGGAGGAGCTAGAGAAATATGATCCAAATAGTGATCCAAATATTTCTGGAGATCCATACAAGACTTTGTTTGTCGCTAGACTTAATTACGAGACAACTGAGAGCAGACTTAAAAGAGAGTTTGACGCTTATGGTCCAATCAAAAGGGTTCGATTGGTCACCGACAAAGAGTCAAATAAACCTAGAGGCTATGCATTCATAGAATACATGCATACCCGGGACATGAAAGCTGCATACAAGCAAGCTGATGGGAAGAAAATTGAAGGTAGAAGGGTGCTTGTAGATGTGGAACGTGGTAGAACGGTACCAAACTGGCGACCTCGGCGACTGGGTGGTGGTCTTGGAACCACCAGAGTCGGTGGTGAAGAAGTTAATCAGAGACATTCGGGGAGGGAGCAAGCACAATCAGGAGGACCATCCCGGTCTGAGGAGCCAAGGGTACGCGAGGAGCGACATGTAGACCTGGACAGAGAAAAATCTCGTGAAAGGGGGAAAGAGAAGGAGAAAGAACGGGAGAAGTCCCGTGAGCGCTCCCAAGAACGCTCCCATGACAAGCCTAGAGAACGTGATCATAGGGAGGATAGGCATCACAGGGACCGTGATAGAACCAGGGATAGAGACAGGGAAAGGGAAAGGGATAGTCGTCGTGATCGTGATCGCGGAAGGGACCGAGGAAGGGATCGTGGTCGCGACTATGAGCGTGATCGCGATAGAGACCGTGACCGGGAGCGAGATCGCCCTCGAGAGAGGGAGAGGGATTATGAAGTTGGGTTACCGGATCATGATCGTGGCCGTTCACGTGATAAAGAGTCTGATTTTGACCGTGTTGAATCAAAACATGGGAGGGACAGGCATGGAGAAAGGGAGCGGGATTATGATCCTGCTGCCCCAGAAGATGACCAGGCTTGGTTTGACCAACCTGAACATGGCCATAGGCACTCAGACCCTGACCATGATCCTGAGCACTATGAGCGTCGTCGAAGCCAGTATGATGATCATATGGATGCTGAGCATGACCATGACCATGACCGCTACAAACAGTATCCTGATCGCTATGATGATCGAATGGAGGATGATGACTACCATTATGAACAAGCACCAGTTGAATCACGTGAGAGAGAGAGAAGTGGAGATGTGGAGCGTGATTATCAGCGTTCTGCGAGATCAATTTCTCGGGAGTATGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

512

Amino Acids

61.18

Weight (kDa)

7.41

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U1snRNP70_N	PF12220	40 - 128	1.3e-19	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
RRM_1	PF00076	139 - 208	1.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	652
AccBSI	CCGCTC	1 cut(s)	1216
AccI	GTMKAC	2 cut(s)	260, 807
AccII	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
AciI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 1008, 1216, 1378
AclWI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1035, 1134, 1220, 1298
AcoI	YGGCCR	2 cut(s)	1138, 1276
AcvI	CACGTG	2 cut(s)	1148, 1460
AfaI	GTAC	2 cut(s)	654, 789
AfeI	AGCGCT	1 cut(s)	878
AfiI	CCNNNNNNNGG	5 cut(s)	209, 775, 1024, 1072, 1274
AflIII	ACRYGT	1 cut(s)	802
AgsI	TTSAA	4 cut(s)	139, 611, 1178, 1454
AhdI	GACNNNNNGTC	1 cut(s)	517
AjnI	CCWGG	3 cut(s)	810, 956, 1248
AluBI	AGCT	5 cut(s)	88, 142, 358, 578, 593
AluI	AGCT	5 cut(s)	88, 142, 358, 578, 593
Alw21I	GWGCWC	1 cut(s)	1314
Alw26I	GTCTC	4 cut(s)	434, 721, 960, 1056
AlwI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1035, 1134, 1220, 1298
AlwNI	CAGNNNCTG	1 cut(s)	1295
Ama87I	CYCGRG	3 cut(s)	564, 1089, 1521
Aor51HI	AGCGCT	1 cut(s)	878
AoxI	GGCC	4 cut(s)	60, 345, 1138, 1276
ApeKI	GCWGC	3 cut(s)	338, 578, 1232
Asp700I	GAANNNNTTC	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	652
AspLEI	GCGC	3 cut(s)	30, 74, 879
AspS9I	GGNCC	5 cut(s)	61, 482, 761, 943, 1015
AsuC2I	CCSGG	5 cut(s)	246, 565, 566, 769, 1073
AsuHPI	GGTGA	2 cut(s)	499, 722
AvaI	CYCGRG	3 cut(s)	564, 1089, 1521
AvaII	GGWCC	4 cut(s)	482, 761, 943, 1015
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	1278
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	307
BarI	GAAGNNNNNNTAC	2 cut(s)	1104, 1136
BauI	CACGAG	1 cut(s)	828
BbrPI	CACGTG	2 cut(s)	1148, 1460
Bbv12I	GWGCWC	1 cut(s)	1314
BbvI	GCAGC	3 cut(s)	350, 565, 1219
BccI	CCATC	2 cut(s)	590, 772
BceAI	ACGGC	3 cut(s)	26, 145, 1125
BciT130I	CCWGG	3 cut(s)	812, 958, 1250
BciVI	GTATCC	1 cut(s)	1401
BclI	TGATCA	2 cut(s)	916, 1342
BcnI	CCSGG	5 cut(s)	246, 565, 566, 769, 1073
BcoDI	GTCTC	4 cut(s)	434, 721, 960, 1056
BfaI	CTAG	4 cut(s)	359, 426, 531, 906
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	1401
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	39, 203, 339, 579, 1233
BlpI	GCTNAGC	2 cut(s)	240, 1356
BlsI	GCNGC	5 cut(s)	40, 204, 340, 580, 1234
Bme1390I	CCNGG	8 cut(s)	246, 565, 566, 769, 812, 958, 1073, 1250
Bme18I	GGWCC	4 cut(s)	482, 761, 943, 1015
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmeT110I	CYCGRG	3 cut(s)	564, 1089, 1521
BmgT120I	GGNCC	5 cut(s)	61, 482, 761, 943, 1015
BmiI	GGNNCC	6 cut(s)	252, 654, 694, 780, 944, 1016
BmrFI	CCNGG	8 cut(s)	246, 565, 566, 769, 812, 958, 1073, 1250
BmrI	ACTGGG	2 cut(s)	250, 686
BmsI	GCATC	3 cut(s)	7, 943, 1342
BmuI	ACTGGG	2 cut(s)	250, 686
BpmI	CTGGAG	2 cut(s)	68, 417
Bpu10I	CCTNAGC	1 cut(s)	1308
Bpu1102I	GCTNAGC	2 cut(s)	240, 1356
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	5 cut(s)	246, 565, 566, 769, 1073
BsaAI	YACGTR	2 cut(s)	1148, 1460
BsaBI	GATNNNNATC	4 cut(s)	933, 1002, 1131, 1224
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	8 cut(s)	57, 245, 348, 564, 668, 782, 957, 1018
BsaWI	WCCGGW	1 cut(s)	1123
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 775, 1024, 1072, 1274
Bse1I	ACTGG	7 cut(s)	121, 256, 316, 665, 681, 1333, 1448
Bse8I	GATNNNNATC	4 cut(s)	933, 1002, 1131, 1224
BseBI	CCWGG	3 cut(s)	812, 958, 1250
BseDI	CCNNGG	8 cut(s)	57, 245, 348, 564, 668, 782, 957, 1018
BseGI	GGATG	3 cut(s)	764, 1357, 1426
BseJI	GATNNNNATC	4 cut(s)	933, 1002, 1131, 1224
BseLI	CCNNNNNNNGG	5 cut(s)	209, 775, 1024, 1072, 1274
BseMII	CTCAG	7 cut(s)	174, 231, 438, 765, 1299, 1302, 1347
BseNI	ACTGG	7 cut(s)	121, 256, 316, 665, 681, 1333, 1448
BseRI	GAGGAG	4 cut(s)	168, 368, 791, 809
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	350, 565, 1219
BsgI	GTGCAG	3 cut(s)	249, 276, 357
Bsh1236I	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
BshFI	GGCC	4 cut(s)	62, 347, 1140, 1278
BshNI	GGYRCC	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	1314
BsiHKCI	CYCGRG	3 cut(s)	564, 1089, 1521
BsiSI	CCGG	5 cut(s)	245, 565, 769, 1072, 1124
BslFI	GGGAC	5 cut(s)	581, 853, 956, 1028, 1208
BslI	CCNNNNNNNGG	5 cut(s)	209, 775, 1024, 1072, 1274
BsmAI	GTCTC	4 cut(s)	434, 721, 960, 1056
BsmFI	GGGAC	5 cut(s)	581, 853, 956, 1028, 1208
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	4 cut(s)	62, 347, 1140, 1278
Bso31I	GGTCTC	1 cut(s)	1056
BsoBI	CYCGRG	3 cut(s)	564, 1089, 1521
Bsp1286I	GDGCHC	3 cut(s)	200, 307, 1314
Bsp1720I	GCTNAGC	2 cut(s)	240, 1356
Bsp68I	TCGCGA	2 cut(s)	1038, 1056
BspACI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 1008, 1216, 1378
BspANI	GGCC	4 cut(s)	62, 347, 1140, 1278
BspCNI	CTCAG	7 cut(s)	175, 232, 439, 766, 1300, 1301, 1348
BspFNI	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
BspHI	TCATGA	1 cut(s)	1129
BspLI	GGNNCC	6 cut(s)	252, 654, 694, 780, 944, 1016
BspPI	GGATC	9 cut(s)	245, 258, 365, 377, 395, 1035, 1134, 1220, 1298
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	652
BspTNI	GGTCTC	1 cut(s)	1056
BsrBI	CCGCTC	1 cut(s)	1216
BsrI	ACTGG	7 cut(s)	121, 256, 316, 665, 681, 1333, 1448
BssECI	CCNNGG	8 cut(s)	57, 245, 348, 564, 668, 782, 957, 1018
BssNAI	GTATAC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	2 cut(s)	57, 782
Bst1107I	GTATAC	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	3 cut(s)	812, 958, 1250
Bst4CI	ACNGT	6 cut(s)	222, 652, 947, 1067, 1172, 1389
Bst6I	CTCTTC	1 cut(s)	149
BstBAI	YACGTR	2 cut(s)	1148, 1460
BstC8I	GCNNGC	3 cut(s)	200, 591, 747
BstDEI	CTNAG	7 cut(s)	183, 240, 447, 774, 1288, 1308, 1356
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	2 cut(s)	505, 1119
BstF5I	GGATG	3 cut(s)	764, 1357, 1426
BstFNI	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	3 cut(s)	30, 74, 879
BstMAI	GTCTC	4 cut(s)	434, 721, 960, 1056
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 47, 148, 157, 344, 670, 1318
BstNI	CCWGG	3 cut(s)	812, 958, 1250
BstNSI	RCATGY	2 cut(s)	559, 806
BstPI	GGTNACC	2 cut(s)	505, 1119
BstSCI	CCNGG	8 cut(s)	244, 563, 564, 767, 810, 956, 1071, 1248
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	200
BstUI	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
BstV1I	GCAGC	3 cut(s)	350, 565, 1219
BstX2I	RGATCY	2 cut(s)	250, 400
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	2 cut(s)	250, 400
BstZ17I	GTATAC	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	1401
BsuRI	GGCC	4 cut(s)	62, 347, 1140, 1278
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	764, 1357, 1426
BtsIMutI	CAGTG	1 cut(s)	114
BtuMI	TCGCGA	2 cut(s)	1038, 1056
Cac8I	GCNNGC	3 cut(s)	200, 591, 747
CaiI	CAGNNNCTG	1 cut(s)	1295
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	3 cut(s)	30, 74, 879
Cfr13I	GGNCC	5 cut(s)	61, 482, 761, 943, 1015
Cfr9I	CCCGGG	1 cut(s)	564
CseI	GACGC	2 cut(s)	482, 1310
Csp6I	GTAC	2 cut(s)	653, 788
CviQI	GTAC	2 cut(s)	653, 788
DdeI	CTNAG	7 cut(s)	183, 240, 447, 774, 1288, 1308, 1356
DriI	GACNNNNNGTC	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	1138, 1276
Eam1104I	CTCTTC	1 cut(s)	149
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	57, 782
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	1056
Eco47I	GGWCC	4 cut(s)	482, 761, 943, 1015
Eco47III	AGCGCT	1 cut(s)	878
Eco72I	CACGTG	2 cut(s)	1148, 1460
Eco88I	CYCGRG	3 cut(s)	564, 1089, 1521
Eco91I	GGTNACC	2 cut(s)	505, 1119
EcoO65I	GGTNACC	2 cut(s)	505, 1119
EcoRII	CCWGG	3 cut(s)	810, 956, 1248
EcoT14I	CCWWGG	2 cut(s)	57, 782
EcoT22I	ATGCAT	2 cut(s)	544, 561
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	2 cut(s)	57, 782
FaqI	GGGAC	5 cut(s)	581, 853, 956, 1028, 1208
FauI	CCCGC	2 cut(s)	207, 1209
FauNDI	CATATG	1 cut(s)	1347
FbaI	TGATCA	2 cut(s)	916, 1342
FblI	GTMKAC	2 cut(s)	260, 807
Fnu4HI	GCNGC	5 cut(s)	39, 203, 339, 579, 1233
FokI	GGATG	3 cut(s)	751, 1364, 1433
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	5 cut(s)	39, 203, 339, 579, 1233
FspBI	CTAG	4 cut(s)	359, 426, 531, 906
FspI	TGCGCA	1 cut(s)	29
GlaI	GCGC	3 cut(s)	29, 73, 878
GluI	GCNGC	5 cut(s)	39, 203, 339, 579, 1233
GsuI	CTGGAG	2 cut(s)	68, 417
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	4 cut(s)	62, 347, 1140, 1278
HapII	CCGG	5 cut(s)	245, 565, 769, 1072, 1124
HgaI	GACGC	2 cut(s)	482, 1310
HhaI	GCGC	3 cut(s)	30, 74, 879
Hin6I	GCGC	3 cut(s)	28, 72, 877
HinP1I	GCGC	3 cut(s)	28, 72, 877
HinfI	GANTC	5 cut(s)	518, 702, 1157, 1178, 1454
HpaII	CCGG	5 cut(s)	245, 565, 769, 1072, 1124
HphI	GGTGA	2 cut(s)	499, 722
Hpy166II	GTNNAC	3 cut(s)	261, 808, 1145
Hpy188I	TCNGA	4 cut(s)	726, 775, 1162, 1291
Hpy8I	GTNNAC	3 cut(s)	261, 808, 1145
Hpy99I	CGWCG	3 cut(s)	996, 1326, 1329
HpyAV	CCTTC	8 cut(s)	31, 294, 325, 605, 612, 841, 1005, 1017
HpyCH4III	ACNGT	6 cut(s)	222, 652, 947, 1067, 1172, 1389
HpyCH4IV	ACGT	4 cut(s)	640, 913, 1147, 1459
HpyCH4V	TGCA	6 cut(s)	266, 293, 338, 542, 559, 581
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 47, 148, 157, 344, 670, 1318
HpyF3I	CTNAG	7 cut(s)	183, 240, 447, 774, 1288, 1308, 1356
HpySE526I	ACGT	4 cut(s)	640, 913, 1147, 1459
HspAI	GCGC	3 cut(s)	28, 72, 877
KpnI	GGTACC	1 cut(s)	656
Ksp22I	TGATCA	2 cut(s)	916, 1342
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	9 cut(s)	355, 742, 778, 796, 884, 896, 1075, 1213, 1486
Lsp1109I	GCAGC	3 cut(s)	350, 565, 1219
LweI	GCATC	3 cut(s)	7, 943, 1342
MaeI	CTAG	4 cut(s)	359, 426, 531, 906
MaeII	ACGT	4 cut(s)	640, 913, 1147, 1459
MaeIII	GTNAC	3 cut(s)	505, 1067, 1119
MbiI	CCGCTC	1 cut(s)	1216
MboII	GAAGA	4 cut(s)	136, 613, 725, 1253
MflI	RGATCY	2 cut(s)	250, 400
MhlI	GDGCHC	3 cut(s)	200, 307, 1314
MlsI	TGGCCA	1 cut(s)	1278
MluCI	AATT	4 cut(s)	232, 433, 606, 1515
MluNI	TGGCCA	1 cut(s)	1278
MlyI	GAGTC	3 cut(s)	527, 711, 1166
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	1278
Mph1103I	ATGCAT	2 cut(s)	544, 561
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	1278
MseI	TTAA	6 cut(s)	122, 171, 320, 432, 459, 720
MslI	CAYNNNNRTG	4 cut(s)	1134, 1350, 1365, 1371
Msp20I	TGGCCA	1 cut(s)	1278
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	5 cut(s)	245, 565, 769, 1072, 1124
MspR9I	CCNGG	8 cut(s)	246, 565, 566, 769, 812, 958, 1073, 1250
Mva1269I	GAATGC	1 cut(s)	542
MvaI	CCWGG	3 cut(s)	812, 958, 1250
MvnI	CGCG	5 cut(s)	72, 792, 1008, 1038, 1056
MwoI	GCNNNNNNNGC	7 cut(s)	12, 47, 148, 157, 344, 670, 1318
NciI	CCSGG	5 cut(s)	246, 565, 566, 769, 1073
NdeI	CATATG	1 cut(s)	1347
NlaIV	GGNNCC	6 cut(s)	252, 654, 694, 780, 944, 1016
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	2 cut(s)	505, 1067
NruI	TCGCGA	2 cut(s)	1038, 1056
NsbI	TGCGCA	1 cut(s)	29
NsiI	ATGCAT	2 cut(s)	544, 561
NspI	RCATGY	2 cut(s)	559, 806
PaeR7I	CTCGAG	1 cut(s)	1089
PagI	TCATGA	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	796, 997
PctI	GAATGC	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	1178, 1454
PkrI	GCNGC	5 cut(s)	40, 204, 340, 580, 1234
PleI	GAGTC	3 cut(s)	526, 710, 1165
PmaCI	CACGTG	2 cut(s)	1148, 1460
PmlI	CACGTG	2 cut(s)	1148, 1460
PpsI	GAGTC	3 cut(s)	526, 710, 1165
Ppu21I	YACGTR	2 cut(s)	1148, 1460
PscI	ACATGT	1 cut(s)	802
Psp6I	CCWGG	3 cut(s)	810, 956, 1248
PspCI	CACGTG	2 cut(s)	1148, 1460
PspEI	GGTNACC	2 cut(s)	505, 1119
PspGI	CCWGG	3 cut(s)	810, 956, 1248
PspN4I	GGNNCC	6 cut(s)	252, 654, 694, 780, 944, 1016
PspPI	GGNCC	5 cut(s)	61, 482, 761, 943, 1015
PstNI	CAGNNNCTG	1 cut(s)	1295
PsuI	RGATCY	2 cut(s)	250, 400
RruI	TCGCGA	2 cut(s)	1038, 1056
RsaI	GTAC	2 cut(s)	654, 789
RsaNI	GTAC	2 cut(s)	653, 788
RseI	CAYNNNNRTG	4 cut(s)	1134, 1350, 1365, 1371
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	6 cut(s)	122, 171, 320, 432, 459, 720
SatI	GCNGC	5 cut(s)	39, 203, 339, 579, 1233
Sau96I	GGNCC	5 cut(s)	61, 482, 761, 943, 1015
SchI	GAGTC	3 cut(s)	527, 711, 1166
ScrFI	CCNGG	8 cut(s)	246, 565, 566, 769, 812, 958, 1073, 1250
SduI	GDGCHC	3 cut(s)	200, 307, 1314
SfaNI	GCATC	3 cut(s)	7, 943, 1342
SfcI	CTRYAG	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	1089
SinI	GGWCC	4 cut(s)	482, 761, 943, 1015
SlaI	CTCGAG	1 cut(s)	1089
SmaI	CCCGGG	1 cut(s)	566
SmiMI	CAYNNNNRTG	4 cut(s)	1134, 1350, 1365, 1371
SmlI	CTYRAG	2 cut(s)	326, 1089
SmoI	CTYRAG	2 cut(s)	326, 1089
Sse9I	AATT	4 cut(s)	232, 433, 606, 1515
SsiI	CCGC	8 cut(s)	39, 70, 158, 200, 203, 1008, 1216, 1378
SspI	AATATT	2 cut(s)	391, 1535
SspMI	CTAG	4 cut(s)	359, 426, 531, 906
StyD4I	CCNGG	8 cut(s)	244, 563, 564, 767, 810, 956, 1071, 1248
StyI	CCWWGG	2 cut(s)	57, 782
TaaI	ACNGT	6 cut(s)	222, 652, 947, 1067, 1172, 1389
TaiI	ACGT	4 cut(s)	643, 916, 1150, 1462
TaqI	TCGA	7 cut(s)	147, 273, 307, 499, 1090, 1327, 1411
TaqII	GACCGA	1 cut(s)	1032
TasI	AATT	4 cut(s)	232, 433, 606, 1515
TauI	GCSGC	2 cut(s)	41, 205
TfiI	GAWTC	2 cut(s)	1178, 1454
Tru1I	TTAA	6 cut(s)	122, 171, 320, 432, 459, 720
Tru9I	TTAA	6 cut(s)	122, 171, 320, 432, 459, 720
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	505, 1067
TseI	GCWGC	3 cut(s)	338, 578, 1232
Tsp45I	GTSAC	2 cut(s)	505, 1067
TspDTI	ATGAA	5 cut(s)	13, 535, 587, 1125, 1452
TspGWI	ACGGA	1 cut(s)	365
TspMI	CCCGGG	1 cut(s)	564
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	4 cut(s)	482, 761, 943, 1015
XceI	RCATGY	2 cut(s)	559, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1271
XhoI	CTCGAG	1 cut(s)	1089
XmaI	CCCGGG	1 cut(s)	564
XmiI	GTMKAC	2 cut(s)	260, 807
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	4 cut(s)	359, 426, 531, 906
Zsp2I	ATGCAT	2 cut(s)	544, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.