Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Reverse (-)

12868799 .. 12878843

Gene Structure 10045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3303 bp

ATGGCTAATGACTCTGATTCTCCATCACCGGATTCTTCACCTTCACCACCAACATCATCAGACTCCTCGTCTTCGTCGTCATCCTCACCCGCACCTTCAAAGGAATCCCCAAAGAATTCGAAAGATACACAGTCGCCAACCCCATCTCCTCCGAAAAACTCCTCACCTCCGCCATCTTCCCCTCCACCGTCCTCACCACCACCTTCGTCTCCTCCTCCATCGACGCCTCCCCCGAAGGACGATGAAGATCAATCGCCCGAGTCCCCGAAACAAAACTCCTCGCCTGCTCCACCGAAGGACAACTCGCAGCCAGCTCCGGCCACTCCGGCAACTCCGGCCACTCCAGCTGGTAGCAATACACCACCCAAACCAAAAGCTCCGGGTGTTCCGGCTACCACTGTCTATGCGCCGCCTCCCCCACGTGCTAAAACTTCGCCCTCCAATGCAGTGACACCACCACCACCTTCCAACGACTCTTCAGATGATACCAGTGGCAATGACTCCGATAAAGGGGTGGTGGTAGGAGTGGGGATCGGCGCCGGAGTAATTGTACTTCTATTGCTCGTCATTTGTGTGCTTTGCTTCAGGAGGAAGAGGAGAAAGAATGACCACATGCAATATTATGGAGATCCACTCAAAGGTGGTGGTCATGACTACTACAACACTACACAGCAACACAATTGGAACATGAATACACCGCCACAAGGAGACCATGTGGTCAGGCTAAACCAAGCAGCAGCTGGTAGTAATCGTGGTGGTGGTGCCTGGCCTTCACCGCCTCCTCCTATGCCGATGAGCGGTGAAATGACAGGGAATTTCTCAGGACCCCACGGACCCCCCTTGCCACCTCCCTCACCAAACATGTCACTCGGCGGGTTCAACCAGAACACCTTCACTTATGATGACCTAGCAACCGCTACTAACGGGTTCTCACAAGCCAATTTGTTGGGTCAAGGTGGGTTCGGGTTTGTGCACAAGGGCGTCCTCCCCAGTGGAAAAGAGGTTGCGGTGAAGAGTCTCAAGGTCGGTAGTGGGCAAGGAGAACGGGAATTTGCTGCGGAGGTCGAGATCATTAGCCGGGTTCATCACCGACATCTAGTGTCGCTCGTTGGCTATTGCATTTCTGGTGGCCATAGATTGTTGGTCTATGAGTTTGTTCCCAATTCAACCATGGAACATCACTTGCATGGCAATGGACTTCCACCAATGGATTGGGCAACTAGGCTTCGGATCGCAACTGGATCTGCTAAAGGGCTTGCCTACCTTCATGAGGACTGCCATCCCAAGATCATCCATCGTGATATCAAATCTGCTAATATTCTCCTGGATAACAACTATGAGGCCATGGTAATTAAGTATTTGGCTCCAGAATATGCATCAAGTGGAAAGTTGACAGAGAAGTCCGATGTCTTCTCATTTGGAGTCATGCTTTTGGAACTCATAACTGGAAAAAGACCGGTTGATCCTTCAAATGCCATGGAAGACAGCTTAGTGGACTGGCGTCATGTCGGGCTTGGAAATAGGCCCATTAGGCTTATCTTGAGCCCAAACAAAGAGGATAAAAAACCGAAACCGGGTAAAGAAAATTTTAACCACGGTTCGCTAGGACCTTCTACTTCTTCTTGCAAGTCCAATCCGACCCGACTGCCTCCACCGGATCCGAGATCCGATTCGTACACCCGTACATGCAACCTTCGTCGTCTGAGTACCAGTACTCGGACTACCGCCGCGGAAACCCTAACTCTGCAGCTGCTTCGAGATCTCTTCGCCATGGGCGACTACAGCGATGCCTTCATGCGCAACAACGCCGCCGTTCAGGCCAAGACCAAGGCCCAGAACCGCGCTAATGTTCTCCAGCTCAAACTGATTGGGCAGAGCCACCCCACTGGTTTAACAACCAATCTTTTGAAGCTCTTCGAGCCTCGTCCGCCTTTGGATTTTAAGCCTCCTCCTGAGAAAAGAAAGTGCCCGCCGCTGACAGGGATAGCACAGTATGTGAGTAATTTTGCTGAGCCGGGGGATCCCCAGTATACTGCACCTGTCGAAAAGGGTGAAACTCCTGCACAAAGAAGGGCTCGGATACACCAGTTAAGACTTGAGAAGGGTGCAGCAAAGGCCGCGGAGGAGCTGGAGAAATATGATCCAAATAGTGATCCAAATATTTCTGGAGATCCATACAAGACTTTGTTTGTTGCTAGACTCAATTATGAGACAACTGAGAGCAGACTTAAAAGGGAGTTTGACGCTTATGGTCCAATCAAAAGGGTTCGATTGGTCACCGACAAAGAGTCAAATAAACCTAGAGGCTATGCATTCATAGAATACATGCATACCCGGGACATGAAAGCTGCATACAAGCAAGCTGATGGGAAGAAAATTGAAGGTAGAAGGGTGCTTGTAGATGTGGAACGTGGTAGAACAGTACCAAACTGGCGACCTCGGCGACTGGGTGGTGGTCTTGGAACCACCAGAGTCGGTGGTGAAGAAGTTAATCAGAGACATTCAGGGAGGGAGCAAGCACAATCAGGAGGACCATCCCGGTCTGAGGAGCCAAGGGTACGCGAGGAGCGACATGTAGACCTGGACAGAGAAAAATCTCGTGAAAGGGGGAAAGAGAAGGAGAGAGAACGGGAGAAGTCCCGTGAGCGCTCCCAAGAACGCTCCCATGACAAGCCTCGAGAACGTGATCATAGGGAGGATAGGCATCACAGGGACCGTGATAGAACCCGGGATAGAGACAGGGAAAGGGAAAGGGATAGTCGTCGTGATCGTGATCGTGGAAGGGACCGAGGAAGGGATCGTGGTCGCGACTATGAGCGTGATCGCGATAGGGAACGTGACCGGGAGCGAGATCGCCCTCGAGAGAGGGAGAGGGATTATGAAGTTGGGTTACCAGATCATGATCGTGGCCGTTCACGTGATAAAGAGTCTGATTTTGACCGTGTTGAATCAAAACATGGGAGGGACAGGCATGGAGAAAGGGAGCGGGATTATGATCCTGCTGCCCCAGAAGATGACCAGGCTTGGTTTGACCAACCTGAACATGGCCATAGGCACTCAGACCCTGACCATGATCCTGAGCACTATGAGCGTCGTCGAAGCCAGTATGATGATCATATGGATGCCGAGCATGACCATGACCGCTACAAACAGTATCCTGATCGCTATGATGATCGACTGGAGGATGATGACTACCATTATGAACAAGCACCAGTTGAATCACGTGAGAGAGAGAGAAGTGGAGATGTGGAGCGTGATTATCAACGTTCTGCGAGATCAATTTCTCGGGAGTATGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

1101

Amino Acids

123.44

Weight (kDa)

8.45

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	311 - 447	1e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	313 - 446	2.1e-23	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	447 - 489	4.2e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	451 - 494	5.5e-06	Protein kinase domain
U1snRNP70_N	PF12220	630 - 718	5e-19	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
RRM_1	PF00076	729 - 798	3.6e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	716, 1399
Acc16I	TGCGCA	1 cut(s)	1799
AccB1I	GGYRCC	2 cut(s)	536, 761
AccBSI	CCGCTC	2 cut(s)	798, 2986
AccI	GTMKAC	2 cut(s)	2030, 2577
AccII	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
AclI	AACGTT	1 cut(s)	3265
AcoI	YGGCCR	5 cut(s)	318, 336, 1129, 2908, 3046
AcsI	RAATTY	4 cut(s)	115, 814, 1049, 1585
AcuI	CTGAAG	2 cut(s)	462, 568
AcvI	CACGTG	3 cut(s)	422, 2918, 3224
AcyI	GRCGYC	4 cut(s)	224, 537, 981, 1501
AfaI	GTAC	7 cut(s)	552, 1676, 1684, 1708, 1714, 2424, 2559
AfeI	AGCGCT	1 cut(s)	2648
AflIII	ACRYGT	2 cut(s)	861, 2572
AgeI	ACCGGT	1 cut(s)	1456
AgsI	TTSAA	8 cut(s)	99, 880, 1167, 1470, 1909, 2381, 2948, 3218
AhdI	GACNNNNNGTC	2 cut(s)	67, 2287
AjnI	CCWGG	4 cut(s)	764, 1323, 2580, 3018
Alw21I	GWGCWC	2 cut(s)	975, 3084
Alw26I	GTCTC	6 cut(s)	213, 702, 1022, 2204, 2491, 2730
Alw44I	GTGCAC	1 cut(s)	971
AlwNI	CAGNNNCTG	2 cut(s)	740, 3065
Ama87I	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
Aor51HI	AGCGCT	1 cut(s)	2648
ApaLI	GTGCAC	1 cut(s)	971
ApeKI	GCWGC	9 cut(s)	307, 734, 737, 1055, 1747, 1750, 2108, 2348, 3002
ApoI	RAATTY	4 cut(s)	115, 814, 1049, 1585
AsiGI	ACCGGT	1 cut(s)	1456
Asp700I	GAANNNNTTC	2 cut(s)	890, 1913
AspLEI	GCGC	5 cut(s)	409, 539, 1800, 1844, 2649
AspS9I	GGNCC	9 cut(s)	824, 833, 1524, 1607, 1831, 2252, 2531, 2713, 2785
AsuII	TTCGAA	1 cut(s)	119
AvaI	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
AvaII	GGWCC	7 cut(s)	824, 833, 1607, 2252, 2531, 2713, 2785
BaeGI	GKGCMC	2 cut(s)	975, 1970
BaeI	ACNNNNGTAYC	2 cut(s)	2072, 2105
BalI	TGGCCA	2 cut(s)	1131, 3048
BamHI	GGATCC	2 cut(s)	1657, 2020
BanI	GGYRCC	2 cut(s)	536, 761
BanII	GRGCYC	2 cut(s)	1547, 2077
BarI	GAAGNNNNNNTAC	4 cut(s)	537, 569, 2874, 2906
BauI	CACGAG	1 cut(s)	2598
BbrPI	CACGTG	3 cut(s)	422, 2918, 3224
BbsI	GAAGAC	3 cut(s)	63, 1402, 1488
Bbv12I	GWGCWC	2 cut(s)	975, 3084
BbvI	GCAGC	9 cut(s)	319, 746, 749, 1042, 1737, 1759, 2120, 2335, 2989
BccI	CCATC	8 cut(s)	31, 151, 181, 226, 1287, 1302, 2360, 2542
BceAI	ACGGC	2 cut(s)	1796, 2895
BcgI	CGANNNNNNTGC	4 cut(s)	1627, 1661, 1736, 1770
BciT130I	CCWGG	4 cut(s)	766, 1325, 2582, 3020
BciVI	GTATCC	2 cut(s)	2073, 3165
BclI	TGATCA	2 cut(s)	2686, 3112
BcoDI	GTCTC	6 cut(s)	213, 702, 1022, 2204, 2491, 2730
BfaI	CTAG	6 cut(s)	908, 1097, 1221, 1604, 2196, 2301
BfmI	CTRYAG	2 cut(s)	1745, 1780
BfoI	RGCGCY	2 cut(s)	540, 2650
BfuI	GTATCC	2 cut(s)	2073, 3165
BglI	GCCNNNNNGGC	3 cut(s)	326, 1531, 1817
BglII	AGATCT	1 cut(s)	1759
BlpI	GCTNAGC	1 cut(s)	2010
BmcAI	AGTACT	1 cut(s)	1714
Bme18I	GGWCC	7 cut(s)	824, 833, 1607, 2252, 2531, 2713, 2785
BmeRI	GACNNNNNGTC	2 cut(s)	67, 2287
BmeT110I	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
BmgT120I	GGNCC	9 cut(s)	824, 833, 1524, 1607, 1831, 2252, 2531, 2713, 2785
BmrI	ACTGGG	3 cut(s)	984, 2020, 2456
BmsI	GCATC	4 cut(s)	1385, 1777, 2713, 3112
BmuI	ACTGGG	3 cut(s)	984, 2020, 2456
BoxI	GACNNNNGTC	1 cut(s)	1500
BpiI	GAAGAC	3 cut(s)	63, 1402, 1488
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
BpmI	CTGGAG	6 cut(s)	327, 1350, 1838, 2150, 2187, 3200
Bpu10I	CCTNAGC	1 cut(s)	3078
Bpu1102I	GCTNAGC	1 cut(s)	2010
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	3 cut(s)	1004, 1561, 2117
BsaAI	YACGTR	3 cut(s)	422, 2918, 3224
BsaBI	GATNNNNATC	5 cut(s)	246, 2703, 2772, 2901, 2994
BsaHI	GRCGYC	4 cut(s)	224, 537, 981, 1501
BsaI	GGTCTC	1 cut(s)	702
BsaWI	WCCGGW	3 cut(s)	28, 1456, 1654
BsaXI	ACNNNNNCTCC	6 cut(s)	130, 160, 534, 564, 699, 729
Bse118I	RCCGGY	1 cut(s)	1456
Bse3DI	GCAATG	2 cut(s)	502, 1198
Bse8I	GATNNNNATC	5 cut(s)	246, 2703, 2772, 2901, 2994
BseBI	CCWGG	4 cut(s)	766, 1325, 2582, 3020
BseGI	GGATG	6 cut(s)	80, 1279, 1290, 2534, 3127, 3190
BseJI	GATNNNNATC	5 cut(s)	246, 2703, 2772, 2901, 2994
BseMI	GCAATG	2 cut(s)	502, 1198
BseMII	CTCAG	8 cut(s)	834, 1694, 1944, 2001, 2208, 2535, 3069, 3072
BseSI	GKGCMC	2 cut(s)	975, 1970
BseXI	GCAGC	9 cut(s)	319, 746, 749, 1042, 1737, 1759, 2120, 2335, 2989
BsgI	GTGCAG	3 cut(s)	2019, 2046, 2127
Bsh1236I	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
BshNI	GGYRCC	2 cut(s)	536, 761
BshTI	ACCGGT	1 cut(s)	1456
BsiHKAI	GWGCWC	2 cut(s)	975, 3084
BsiHKCI	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
BslFI	GGGAC	6 cut(s)	247, 2351, 2623, 2726, 2798, 2978
BsmAI	GTCTC	6 cut(s)	213, 702, 1022, 2204, 2491, 2730
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	6 cut(s)	247, 2351, 2623, 2726, 2798, 2978
BsmI	GAATGC	1 cut(s)	2312
Bso31I	GGTCTC	1 cut(s)	702
BsoBI	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	5 cut(s)	975, 1547, 1970, 2077, 3084
Bsp1720I	GCTNAGC	1 cut(s)	2010
Bsp19I	CCATGG	4 cut(s)	1170, 1344, 1476, 1770
Bsp68I	TCGCGA	2 cut(s)	2808, 2826
BspCNI	CTCAG	8 cut(s)	833, 1695, 1945, 2002, 2209, 2536, 3070, 3071
BspFNI	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
BspHI	TCATGA	3 cut(s)	649, 1267, 2899
BspMAI	CTGCAG	1 cut(s)	1749
BspQI	GCTCTTC	1 cut(s)	1919
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	2 cut(s)	536, 761
BspTNI	GGTCTC	1 cut(s)	702
BsrBI	CCGCTC	2 cut(s)	798, 2986
BsrDI	GCAATG	2 cut(s)	502, 1198
BsrFI	RCCGGY	1 cut(s)	1456
BssAI	RCCGGY	1 cut(s)	1456
BssNAI	GTATAC	1 cut(s)	2031
BssNI	GRCGYC	4 cut(s)	224, 537, 981, 1501
BssSI	CACGAG	1 cut(s)	2598
BssT1I	CCWWGG	6 cut(s)	1170, 1344, 1476, 1770, 1827, 2552
Bst1107I	GTATAC	1 cut(s)	2031
Bst2BI	CACGAG	1 cut(s)	2598
Bst2UI	CCWGG	4 cut(s)	766, 1325, 2582, 3020
Bst4CI	ACNGT	9 cut(s)	132, 189, 400, 1598, 1992, 2422, 2717, 2942, 3153
Bst6I	CTCTTC	5 cut(s)	481, 587, 1007, 1769, 1919
BstACI	GRCGYC	4 cut(s)	224, 537, 981, 1501
BstBAI	YACGTR	3 cut(s)	422, 2918, 3224
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	6 cut(s)	285, 312, 1257, 1970, 2361, 2517
BstDEI	CTNAG	9 cut(s)	820, 1489, 1703, 1953, 2010, 2217, 2544, 3058, 3078
BstDSI	CCRYGG	8 cut(s)	829, 1170, 1344, 1476, 1594, 1728, 1770, 2118
BstEII	GGTNACC	2 cut(s)	2275, 2889
BstENI	CCTNNNNNAGG	1 cut(s)	1268
BstF5I	GGATG	6 cut(s)	80, 1279, 1290, 2534, 3127, 3190
BstFNI	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
BstH2I	RGCGCY	2 cut(s)	540, 2650
BstHHI	GCGC	5 cut(s)	409, 539, 1800, 1844, 2649
BstMAI	GTCTC	6 cut(s)	213, 702, 1022, 2204, 2491, 2730
BstNI	CCWGG	4 cut(s)	766, 1325, 2582, 3020
BstNSI	RCATGY	5 cut(s)	616, 865, 1689, 2329, 2576
BstPAI	GACNNNNGTC	1 cut(s)	1500
BstPI	GGTNACC	2 cut(s)	2275, 2889
BstSFI	CTRYAG	2 cut(s)	1745, 1780
BstSLI	GKGCMC	2 cut(s)	975, 1970
BstUI	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
BstV1I	GCAGC	9 cut(s)	319, 746, 749, 1042, 1737, 1759, 2120, 2335, 2989
BstV2I	GAAGAC	3 cut(s)	63, 1402, 1488
BstX2I	RGATCY	7 cut(s)	628, 1241, 1657, 1664, 1759, 2020, 2170
BstXI	CCANNNNNNTGG	3 cut(s)	946, 1212, 1886
BstYI	RGATCY	7 cut(s)	628, 1241, 1657, 1664, 1759, 2020, 2170
BstZ17I	GTATAC	1 cut(s)	2031
BsuI	GTATCC	2 cut(s)	2073, 3165
BtgI	CCRYGG	8 cut(s)	829, 1170, 1344, 1476, 1594, 1728, 1770, 2118
BtgZI	GCGATG	1 cut(s)	1800
BtsCI	GGATG	6 cut(s)	80, 1279, 1290, 2534, 3127, 3190
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	5 cut(s)	396, 453, 496, 997, 1884
BtuMI	TCGCGA	2 cut(s)	2808, 2826
Cac8I	GCNNGC	6 cut(s)	285, 312, 1257, 1970, 2361, 2517
CaiI	CAGNNNCTG	2 cut(s)	740, 3065
CciI	TCATGA	3 cut(s)	649, 1267, 2899
CfoI	GCGC	5 cut(s)	409, 539, 1800, 1844, 2649
Cfr10I	RCCGGY	1 cut(s)	1456
Cfr13I	GGNCC	9 cut(s)	824, 833, 1524, 1607, 1831, 2252, 2531, 2713, 2785
Cfr42I	CCGCGG	2 cut(s)	1731, 2121
Cfr9I	CCCGGG	2 cut(s)	2334, 2727
CseI	GACGC	5 cut(s)	232, 970, 1490, 2252, 3080
Csp6I	GTAC	7 cut(s)	551, 1675, 1683, 1707, 1713, 2423, 2558
CspAI	ACCGGT	1 cut(s)	1456
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviQI	GTAC	7 cut(s)	551, 1675, 1683, 1707, 1713, 2423, 2558
DdeI	CTNAG	9 cut(s)	820, 1489, 1703, 1953, 2010, 2217, 2544, 3058, 3078
DinI	GGCGCC	1 cut(s)	538
DrdI	GACNNNNNNGTC	2 cut(s)	716, 1399
DriI	GACNNNNNGTC	2 cut(s)	67, 2287
DseDI	GACNNNNNNGTC	2 cut(s)	716, 1399
EaeI	YGGCCR	5 cut(s)	318, 336, 1129, 2908, 3046
Eam1104I	CTCTTC	5 cut(s)	481, 587, 1007, 1769, 1919
Eam1105I	GACNNNNNGTC	2 cut(s)	67, 2287
EarI	CTCTTC	5 cut(s)	481, 587, 1007, 1769, 1919
EciI	GGCGGA	2 cut(s)	159, 1917
Eco130I	CCWWGG	6 cut(s)	1170, 1344, 1476, 1770, 1827, 2552
Eco24I	GRGCYC	2 cut(s)	1547, 2077
Eco31I	GGTCTC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	1303
Eco47I	GGWCC	7 cut(s)	824, 833, 1607, 2252, 2531, 2713, 2785
Eco47III	AGCGCT	1 cut(s)	2648
Eco57I	CTGAAG	2 cut(s)	462, 568
Eco72I	CACGTG	3 cut(s)	422, 2918, 3224
Eco88I	CYCGRG	6 cut(s)	257, 2334, 2676, 2727, 2859, 3285
Eco91I	GGTNACC	2 cut(s)	2275, 2889
EcoNI	CCTNNNNNAGG	1 cut(s)	1268
EcoO109I	RGGNCCY	2 cut(s)	824, 1607
EcoO65I	GGTNACC	2 cut(s)	2275, 2889
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	4 cut(s)	764, 1323, 2580, 3018
EcoRV	GATATC	1 cut(s)	1303
EcoT14I	CCWWGG	6 cut(s)	1170, 1344, 1476, 1770, 1827, 2552
EcoT22I	ATGCAT	3 cut(s)	1378, 2314, 2331
EcoT38I	GRGCYC	2 cut(s)	1547, 2077
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	6 cut(s)	1170, 1344, 1476, 1770, 1827, 2552
Esp3I	CGTCTC	1 cut(s)	213
FaqI	GGGAC	6 cut(s)	247, 2351, 2623, 2726, 2798, 2978
FauI	CCCGC	4 cut(s)	97, 866, 1977, 2979
FauNDI	CATATG	1 cut(s)	3117
FbaI	TGATCA	2 cut(s)	2686, 3112
FblI	GTMKAC	2 cut(s)	2030, 2577
FokI	GGATG	6 cut(s)	67, 1266, 1277, 2521, 3134, 3197
FriOI	GRGCYC	2 cut(s)	1547, 2077
FspBI	CTAG	6 cut(s)	908, 1097, 1221, 1604, 2196, 2301
FspI	TGCGCA	1 cut(s)	1799
GlaI	GCGC	5 cut(s)	408, 538, 1799, 1843, 2648
GsuI	CTGGAG	6 cut(s)	327, 1350, 1838, 2150, 2187, 3200
HaeII	RGCGCY	2 cut(s)	540, 2650
HgaI	GACGC	5 cut(s)	232, 970, 1490, 2252, 3080
HhaI	GCGC	5 cut(s)	409, 539, 1800, 1844, 2649
Hin1I	GRCGYC	4 cut(s)	224, 537, 981, 1501
Hin6I	GCGC	5 cut(s)	407, 537, 1798, 1842, 2647
HinP1I	GCGC	5 cut(s)	407, 537, 1798, 1842, 2647
HincII	GTYRAC	1 cut(s)	1392
HindII	GTYRAC	1 cut(s)	1392
Hpy166II	GTNNAC	7 cut(s)	973, 1392, 1495, 1677, 2031, 2578, 2915
Hpy8I	GTNNAC	7 cut(s)	973, 1392, 1495, 1677, 2031, 2578, 2915
Hpy99I	CGWCG	6 cut(s)	79, 226, 1701, 2766, 3096, 3099
HpyCH4III	ACNGT	9 cut(s)	132, 189, 400, 1598, 1992, 2422, 2717, 2942, 3153
HpyCH4IV	ACGT	7 cut(s)	421, 2410, 2683, 2836, 2917, 3223, 3265
HpyF3I	CTNAG	9 cut(s)	820, 1489, 1703, 1953, 2010, 2217, 2544, 3058, 3078
HpySE526I	ACGT	7 cut(s)	421, 2410, 2683, 2836, 2917, 3223, 3265
Hsp92I	GRCGYC	4 cut(s)	224, 537, 981, 1501
HspAI	GCGC	5 cut(s)	407, 537, 1798, 1842, 2647
KasI	GGCGCC	1 cut(s)	536
Ksp22I	TGATCA	2 cut(s)	2686, 3112
KspI	CCGCGG	2 cut(s)	1731, 2121
LguI	GCTCTTC	1 cut(s)	1919
Lsp1109I	GCAGC	9 cut(s)	319, 746, 749, 1042, 1737, 1759, 2120, 2335, 2989
LweI	GCATC	4 cut(s)	1385, 1777, 2713, 3112
MaeI	CTAG	6 cut(s)	908, 1097, 1221, 1604, 2196, 2301
MaeII	ACGT	7 cut(s)	421, 2410, 2683, 2836, 2917, 3223, 3265
MaeIII	GTNAC	5 cut(s)	448, 864, 2275, 2837, 2889
MbiI	CCGCTC	2 cut(s)	798, 2986
MfeI	CAATTG	1 cut(s)	679
MflI	RGATCY	7 cut(s)	628, 1241, 1657, 1664, 1759, 2020, 2170
MhlI	GDGCHC	5 cut(s)	975, 1547, 1970, 2077, 3084
MlsI	TGGCCA	2 cut(s)	1131, 3048
MluNI	TGGCCA	2 cut(s)	1131, 3048
Mly113I	GGCGCC	1 cut(s)	537
MmeI	TCCRAC	2 cut(s)	492, 1661
Mox20I	TGGCCA	2 cut(s)	1131, 3048
Mph1103I	ATGCAT	3 cut(s)	1378, 2314, 2331
MroXI	GAANNNNTTC	2 cut(s)	890, 1913
MscI	TGGCCA	2 cut(s)	1131, 3048
MseI	TTAA	7 cut(s)	1353, 1590, 1892, 1941, 2090, 2229, 2490
MslI	CAYNNNNRTG	6 cut(s)	572, 1185, 1191, 2904, 3120, 3135
Msp20I	TGGCCA	2 cut(s)	1131, 3048
MspA1I	CMGCKG	6 cut(s)	347, 740, 1730, 1750, 1975, 2120
MunI	CAATTG	1 cut(s)	679
Mva1269I	GAATGC	1 cut(s)	2312
MvaI	CCWGG	4 cut(s)	766, 1325, 2582, 3020
MvnI	CGCG	6 cut(s)	1730, 1842, 2120, 2562, 2808, 2826
NarI	GGCGCC	1 cut(s)	537
NcoI	CCATGG	4 cut(s)	1170, 1344, 1476, 1770
NdeI	CATATG	1 cut(s)	3117
NmeAIII	GCCGAG	3 cut(s)	849, 2419, 3151
NmuCI	GTSAC	4 cut(s)	448, 864, 2275, 2837
NruI	TCGCGA	2 cut(s)	2808, 2826
NsbI	TGCGCA	1 cut(s)	1799
NsiI	ATGCAT	3 cut(s)	1378, 2314, 2331
NspI	RCATGY	5 cut(s)	616, 865, 1689, 2329, 2576
NspV	TTCGAA	1 cut(s)	119
PaeR7I	CTCGAG	2 cut(s)	2676, 2859
PagI	TCATGA	3 cut(s)	649, 1267, 2899
PciI	ACATGT	2 cut(s)	861, 2572
PciSI	GCTCTTC	1 cut(s)	1919
PcsI	WCGNNNNNNNCGW	5 cut(s)	74, 230, 1773, 2566, 2767
PctI	GAATGC	1 cut(s)	2312
PdmI	GAANNNNTTC	2 cut(s)	890, 1913
PfeI	GAWTC	6 cut(s)	17, 32, 104, 1670, 2948, 3218
PfoI	TCCNGGA	1 cut(s)	1323
PinAI	ACCGGT	1 cut(s)	1456
PluTI	GGCGCC	1 cut(s)	540
PmaCI	CACGTG	3 cut(s)	422, 2918, 3224
PmlI	CACGTG	3 cut(s)	422, 2918, 3224
Ppu21I	YACGTR	3 cut(s)	422, 2918, 3224
PpuMI	RGGWCCY	2 cut(s)	824, 1607
PscI	ACATGT	2 cut(s)	861, 2572
PshAI	GACNNNNGTC	1 cut(s)	1500
Psp1406I	AACGTT	1 cut(s)	3265
Psp5II	RGGWCCY	2 cut(s)	824, 1607
Psp6I	CCWGG	4 cut(s)	764, 1323, 2580, 3018
PspCI	CACGTG	3 cut(s)	422, 2918, 3224
PspEI	GGTNACC	2 cut(s)	2275, 2889
PspGI	CCWGG	4 cut(s)	764, 1323, 2580, 3018
PspPI	GGNCC	9 cut(s)	824, 833, 1524, 1607, 1831, 2252, 2531, 2713, 2785
PspPPI	RGGWCCY	2 cut(s)	824, 1607
PstI	CTGCAG	1 cut(s)	1749
PstNI	CAGNNNCTG	2 cut(s)	740, 3065
PsuI	RGATCY	7 cut(s)	628, 1241, 1657, 1664, 1759, 2020, 2170
PvuII	CAGCTG	3 cut(s)	347, 740, 1750
RruI	TCGCGA	2 cut(s)	2808, 2826
RsaI	GTAC	7 cut(s)	552, 1676, 1684, 1708, 1714, 2424, 2559
RsaNI	GTAC	7 cut(s)	551, 1675, 1683, 1707, 1713, 2423, 2558
RseI	CAYNNNNRTG	6 cut(s)	572, 1185, 1191, 2904, 3120, 3135
SacII	CCGCGG	2 cut(s)	1731, 2121
SapI	GCTCTTC	1 cut(s)	1919
SaqAI	TTAA	7 cut(s)	1353, 1590, 1892, 1941, 2090, 2229, 2490
Sau96I	GGNCC	9 cut(s)	824, 833, 1524, 1607, 1831, 2252, 2531, 2713, 2785
ScaI	AGTACT	1 cut(s)	1714
SduI	GDGCHC	5 cut(s)	975, 1547, 1970, 2077, 3084
SfaNI	GCATC	4 cut(s)	1385, 1777, 2713, 3112
SfcI	CTRYAG	2 cut(s)	1745, 1780
SfoI	GGCGCC	1 cut(s)	538
Sfr274I	CTCGAG	2 cut(s)	2676, 2859
Sfr303I	CCGCGG	2 cut(s)	1731, 2121
SfuI	TTCGAA	1 cut(s)	119
SgrBI	CCGCGG	2 cut(s)	1731, 2121
SinI	GGWCC	7 cut(s)	824, 833, 1607, 2252, 2531, 2713, 2785
SlaI	CTCGAG	2 cut(s)	2676, 2859
SmaI	CCCGGG	2 cut(s)	2336, 2729
SmiMI	CAYNNNNRTG	6 cut(s)	572, 1185, 1191, 2904, 3120, 3135
SmlI	CTYRAG	5 cut(s)	1019, 1540, 2096, 2676, 2859
SmoI	CTYRAG	5 cut(s)	1019, 1540, 2096, 2676, 2859
SspDI	GGCGCC	1 cut(s)	536
SspI	AATATT	4 cut(s)	620, 1318, 2161, 3299
SspMI	CTAG	6 cut(s)	908, 1097, 1221, 1604, 2196, 2301
StyI	CCWWGG	6 cut(s)	1170, 1344, 1476, 1770, 1827, 2552
TaaI	ACNGT	9 cut(s)	132, 189, 400, 1598, 1992, 2422, 2717, 2942, 3153
TaiI	ACGT	7 cut(s)	424, 2413, 2686, 2839, 2920, 3226, 3268
TaqII	GACCGA	1 cut(s)	2802
TatI	WGTACW	2 cut(s)	550, 1712
TauI	GCSGC	5 cut(s)	412, 1730, 1811, 1975, 2120
TfiI	GAWTC	6 cut(s)	17, 32, 104, 1670, 2948, 3218
Tru1I	TTAA	7 cut(s)	1353, 1590, 1892, 1941, 2090, 2229, 2490
Tru9I	TTAA	7 cut(s)	1353, 1590, 1892, 1941, 2090, 2229, 2490
TscAI	CASTG	5 cut(s)	403, 453, 496, 997, 1891
TseFI	GTSAC	4 cut(s)	448, 864, 2275, 2837
TseI	GCWGC	9 cut(s)	307, 734, 737, 1055, 1747, 1750, 2108, 2348, 3002
Tsp45I	GTSAC	4 cut(s)	448, 864, 2275, 2837
TspDTI	ATGAA	9 cut(s)	258, 704, 1073, 1256, 1783, 2305, 2357, 2895, 3216
TspGWI	ACGGA	1 cut(s)	846
TspMI	CCCGGG	2 cut(s)	2334, 2727
TspRI	CASTG	5 cut(s)	403, 453, 496, 997, 1891
VneI	GTGCAC	1 cut(s)	971
VpaK11BI	GGWCC	7 cut(s)	824, 833, 1607, 2252, 2531, 2713, 2785
XagI	CCTNNNNNAGG	1 cut(s)	1268
XapI	RAATTY	4 cut(s)	115, 814, 1049, 1585
XceI	RCATGY	5 cut(s)	616, 865, 1689, 2329, 2576
XcmI	CCANNNNNNNNNTGG	4 cut(s)	737, 1168, 1209, 3041
XhoI	CTCGAG	2 cut(s)	2676, 2859
XmaI	CCCGGG	2 cut(s)	2334, 2727
XmiI	GTMKAC	2 cut(s)	2030, 2577
XmnI	GAANNNNTTC	2 cut(s)	890, 1913
XspI	CTAG	6 cut(s)	908, 1097, 1221, 1604, 2196, 2301
ZrmI	AGTACT	1 cut(s)	1714
Zsp2I	ATGCAT	3 cut(s)	1378, 2314, 2331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.