Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009950

Physical Location & Seq

Genomic Coordinates Reverse (-)

12321937 .. 12325300

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1149700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCATACAAGGGACATGAAAGCTGCATACAAACAAGCTGATGGGAGGAAAATTGAGGGAAGAAGGGTACTTGTTGATGTTGAACGTGGTAGAACAGTTCCTAACTGGCGACCCCGCCGACTGGGTGGTGGGCTTGGAACTACCAGAGTTGGAGGTGAAGATGTCAATCAGAGATATTCTGGAAGGGAGCAAGTACAATCTGGAGGACAACCCCGGTCTGAGGAGCCAAGGGCACGCGAGGAGCGACATGTAGACTTGGATAGAGAAAAATCCCGTGAAAGAGGAAAAGAGAAAGAAAAGGAAAGAGAACGGGAGAAGTCCCGCGAGCGCTCTCGTGAACGCTCCCATGACAAGTCTAGAGACCGTGATCACAGGGAAGATAGGCACCACAGAGATCGTGATAGAAACAGGGACAAGGACAGGGATAGGGAAAGAGATCGTGGTGGTCGTGATCGGGATCGTACTCGTGAACGAGGACGGGATCGTGGTCGTGACTATGAGCATGGTCGTGATCGAGATAGAGACCGTGATCGGGAGCGTGATCGTGATCATCGCTCTAGAGACAGGGAGAGGGATTATGAAGTTGGGGAGCCTGAGCATGATCGTGGCCGTTCCCATGACCGTATTGAATCAAAACATGAGAGGGTCCGACATGGGGATCGGGAGCGGGGTTATGACCACACTGCCCAAGAAGACGACCAGGGTTGGTTTGAACAACCTGGGCATGGCCATAGGCACTCAGAGCCAGATGATGATGCTGAGCCCTATGAGCATCATCGTAGCCAGTATGATCAATTGGAAGTCCAGCATGATGATGATCGCTACAAACAGTATCCGGACAATGCTCATGATCGCTATGATCGAATGGAAGAGGATGATTACCATTATGAACAAGCACCAGCTGATCCCCGTGAAAGGGAGAGGGGTGGAGATGTCGAGCGAGATTATCAGAGGTCATCTAGATCACTATCTCGAGACTACAATGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071004 GO:0071010 GO:0071011 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 U1snRNP70_N

Protein Analysis

331

Amino Acids

40.48

Weight (kDa)

6.52

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50670 AT3G50670
fragaria_vesca	FvH4_1g13450
malus_domestica	MD02G1149700.v1.1 MD02G1149800.v1.1 MD15G1264300.v1.1 MD15G1264400.v1.1
prunus_persica	Prupe.7G153200_v2.0.a1 Prupe.7G153200_v2.0.a1
pyrus_communis	pycom02g11780 pycom15g23010
rosa_chinensis	RchiOBHm_Chr2g0101831
rosa_laevigata	RLG00000017104
rosa_multiflora	Rmu_sc0000838.1_g000005
rosa_roxburghii	Rroxscaffold_2G00141010
rosa_rugosa	Rorug02G0102100.1
rosa_samantha	Rh2AG149600 Rh2BG155200 Rh2CG155600 Rh2DG155400
rosa_wichuraiana	Rw2G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	384
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	237, 324
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	3 cut(s)	115, 322, 667
AclWI	GGATC	4 cut(s)	465, 489, 666, 899
AcoI	YGGCCR	2 cut(s)	607, 727
AfaI	GTAC	3 cut(s)	69, 195, 463
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	7 cut(s)	121, 220, 532, 655, 725, 915, 916
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	83, 629, 713
AjnI	CCWGG	2 cut(s)	699, 718
AluBI	AGCT	3 cut(s)	23, 38, 902
AluI	AGCT	3 cut(s)	23, 38, 902
Alw26I	GTCTC	4 cut(s)	354, 516, 555, 969
AlwI	GGATC	4 cut(s)	465, 489, 666, 899
Ama87I	CYCGRG	1 cut(s)	972
Aor13HI	TCCGGA	1 cut(s)	835
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	2 cut(s)	607, 727
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	972
AvaII	GGWCC	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	729
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	765
BauI	CACGAG	2 cut(s)	333, 465
BbsI	GAAGAC	1 cut(s)	699
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	2 cut(s)	701, 720
BciVI	GTATCC	1 cut(s)	843
BclI	TGATCA	3 cut(s)	367, 547, 790
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	4 cut(s)	354, 516, 555, 969
BfaI	CTAG	3 cut(s)	357, 558, 960
BfoI	RGCGCY	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	843
BisI	GCNGC	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	3 cut(s)	214, 701, 720
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	972
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	4 cut(s)	225, 386, 591, 647
BmrFI	CCNGG	3 cut(s)	214, 701, 720
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	745, 781
BmuI	ACTGGG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	214
BsaBI	GATNNNNATC	5 cut(s)	165, 456, 546, 816, 967
BsaI	GGTCTC	2 cut(s)	354, 516
BsaJI	CCNNGG	4 cut(s)	212, 227, 700, 719
BsaWI	WCCGGW	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 220, 532, 655, 725, 915, 916
Bse1I	ACTGG	3 cut(s)	110, 126, 784
Bse8I	GATNNNNATC	5 cut(s)	165, 456, 546, 816, 967
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	2 cut(s)	701, 720
BseDI	CCNNGG	4 cut(s)	212, 227, 700, 719
BseGI	GGATG	1 cut(s)	880
BseJI	GATNNNNATC	5 cut(s)	165, 456, 546, 816, 967
BseLI	CCNNNNNNNGG	7 cut(s)	121, 220, 532, 655, 725, 915, 916
BseMII	CTCAG	4 cut(s)	210, 585, 750, 753
BseNI	ACTGG	3 cut(s)	110, 126, 784
BseRI	GAGGAG	2 cut(s)	236, 254
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	2 cut(s)	237, 324
BshFI	GGCC	2 cut(s)	609, 729
BshNI	GGYRCC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	972
BsiSI	CCGG	2 cut(s)	214, 836
BslFI	GGGAC	3 cut(s)	26, 304, 425
BslI	CCNNNNNNNGG	7 cut(s)	121, 220, 532, 655, 725, 915, 916
BsmAI	GTCTC	4 cut(s)	354, 516, 555, 969
BsmFI	GGGAC	3 cut(s)	26, 304, 425
BsnI	GGCC	2 cut(s)	609, 729
Bso31I	GGTCTC	2 cut(s)	354, 516
BsoBI	CYCGRG	1 cut(s)	972
Bsp1286I	GDGCHC	2 cut(s)	235, 765
Bsp13I	TCCGGA	1 cut(s)	835
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	3 cut(s)	115, 322, 667
BspANI	GGCC	2 cut(s)	609, 729
BspCNI	CTCAG	4 cut(s)	211, 586, 751, 752
BspEI	TCCGGA	1 cut(s)	835
BspFNI	CGCG	2 cut(s)	237, 324
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	4 cut(s)	225, 386, 591, 647
BspPI	GGATC	4 cut(s)	465, 489, 666, 899
BspT107I	GGYRCC	1 cut(s)	384
BspTNI	GGTCTC	2 cut(s)	354, 516
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	3 cut(s)	110, 126, 784
BssECI	CCNNGG	4 cut(s)	212, 227, 700, 719
BssSI	CACGAG	2 cut(s)	333, 465
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	2 cut(s)	333, 465
Bst2UI	CCWGG	2 cut(s)	701, 720
Bst4CI	ACNGT	5 cut(s)	97, 365, 527, 623, 831
Bst6I	CTCTTC	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	235, 326
BstDEI	CTNAG	4 cut(s)	219, 594, 739, 759
BstF5I	GGATG	1 cut(s)	880
BstFNI	CGCG	2 cut(s)	237, 324
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstMAI	GTCTC	4 cut(s)	354, 516, 555, 969
BstMWI	GCNNNNNNNGC	2 cut(s)	742, 769
BstNI	CCWGG	2 cut(s)	701, 720
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	212, 699, 718
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	2 cut(s)	237, 324
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	2 cut(s)	609, 729
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	1 cut(s)	880
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	235, 326
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	646
Csp6I	GTAC	3 cut(s)	68, 194, 462
CviQI	GTAC	3 cut(s)	68, 194, 462
DdeI	CTNAG	4 cut(s)	219, 594, 739, 759
EaeI	YGGCCR	2 cut(s)	607, 727
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	2 cut(s)	354, 516
Eco47I	GGWCC	1 cut(s)	646
Eco47III	AGCGCT	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	972
EcoRII	CCWGG	2 cut(s)	699, 718
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	227
FaqI	GGGAC	3 cut(s)	26, 304, 425
FauI	CCCGC	3 cut(s)	122, 329, 660
FbaI	TGATCA	3 cut(s)	367, 547, 790
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	887
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	3 cut(s)	357, 558, 960
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	609, 729
HapII	CCGG	2 cut(s)	214, 836
HhaI	GCGC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	2 cut(s)	214, 836
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	253, 338, 470
Hpy188I	TCNGA	5 cut(s)	171, 220, 650, 742, 951
Hpy8I	GTNNAC	3 cut(s)	253, 338, 470
HpyAV	CCTTC	2 cut(s)	57, 177
HpyCH4III	ACNGT	5 cut(s)	97, 365, 527, 623, 831
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	4, 26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	742, 769
HpyF3I	CTNAG	4 cut(s)	219, 594, 739, 759
HpySE526I	ACGT	1 cut(s)	85
HspAI	GCGC	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	835
Ksp22I	TGATCA	3 cut(s)	367, 547, 790
LmnI	GCTCC	7 cut(s)	187, 223, 241, 347, 535, 589, 664
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	745, 781
MaeI	CTAG	3 cut(s)	357, 558, 960
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	491
MbiI	CCGCTC	1 cut(s)	667
MboII	GAAGA	5 cut(s)	72, 170, 389, 704, 881
MfeI	CAATTG	1 cut(s)	794
MhlI	GDGCHC	2 cut(s)	235, 765
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	2 cut(s)	51, 794
MluNI	TGGCCA	1 cut(s)	729
MmeI	TCCRAC	2 cut(s)	130, 673
Mox20I	TGGCCA	1 cut(s)	729
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	835
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	1 cut(s)	991
MslI	CAYNNNNRTG	3 cut(s)	507, 603, 813
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	2 cut(s)	214, 836
MspR9I	CCNGG	3 cut(s)	214, 701, 720
MunI	CAATTG	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	701, 720
MvnI	CGCG	2 cut(s)	237, 324
MwoI	GCNNNNNNNGC	2 cut(s)	742, 769
NciI	CCSGG	1 cut(s)	214
NlaIV	GGNNCC	4 cut(s)	225, 386, 591, 647
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	972
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	3 cut(s)	241, 445, 859
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	25
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	699, 718
PspGI	CCWGG	2 cut(s)	699, 718
PspN4I	GGNNCC	4 cut(s)	225, 386, 591, 647
PspPI	GGNCC	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	3 cut(s)	69, 195, 463
RsaNI	GTAC	3 cut(s)	68, 194, 462
RseI	CAYNNNNRTG	3 cut(s)	507, 603, 813
SaqAI	TTAA	1 cut(s)	991
SatI	GCNGC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	646
ScrFI	CCNGG	3 cut(s)	214, 701, 720
SduI	GDGCHC	2 cut(s)	235, 765
SetI	ASST	7 cut(s)	25, 40, 88, 157, 721, 904, 956
SfaNI	GCATC	2 cut(s)	745, 781
Sfr274I	CTCGAG	1 cut(s)	972
SinI	GGWCC	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	972
SmiMI	CAYNNNNRTG	3 cut(s)	507, 603, 813
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
Sse9I	AATT	2 cut(s)	51, 794
SsiI	CCGC	3 cut(s)	115, 322, 667
SspMI	CTAG	3 cut(s)	357, 558, 960
StyD4I	CCNGG	3 cut(s)	212, 699, 718
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	5 cut(s)	97, 365, 527, 623, 831
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	4 cut(s)	514, 862, 936, 973
TasI	AATT	2 cut(s)	51, 794
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	1 cut(s)	991
Tru9I	TTAA	1 cut(s)	991
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	32, 594, 903
TspRI	CASTG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	646
XbaI	TCTAGA	3 cut(s)	356, 557, 959
XceI	RCATGY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	972
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	3 cut(s)	357, 558, 960
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.