AT3G50830

Cold-regulated 413 plasma membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014958
Physical Location & Seq
Reverse (-)
18893739 .. 18895587
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50830.1

Sequence Viewer

Length: 612 bp
ATGGGGCGTATGGATTATCTAGCGATGAAGACCGACGACGTCGATACGGTGGCGTTAGTCAATTCCGATATGGAAGAGCTCAAGGTCGCTGCGAAGAAACTGTTTAGCGATGTTTCGAAGCTTGGTGGATTAGGCTTCGGTGTTTCTTTTCTCAAATTCCTCGCTTCTTTCGCTGCCATTTACTTGTTAATTTTGGATCGTACCAATTGGAAAACCAAGATGCTTACATCACTCCTAATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTTGAGATGCCAGGTTCTCTGATCCTGCTACTGGTAGTTTCTCCACACTTCCTTGCTCACCATATACGTGGAACCTGGATAGGCACTGTAATCAGCCTTTTCATTGGATGTTACCTTCTTCAAGAACATATTCGAGCATCGGGTGGATTCAGGAACTCATTCACACAGCCCCGTGGAGTATCAAACACTTTAGGGATCATTCTTCTTTTGGTCTACCCTGTCTGGGCTCTAATCGTCCGTGTCATGTAA

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

9.44

Isoelectric Point (pI)

22.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 9 - 190 5.8e-88 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50830
fragaria_vesca FvH4_1g14460
malus_domestica MD15G1273000.v1.1
prunus_persica Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis pycom15g23620
rosa_chinensis RchiOBHm_Chr2g0103221
rosa_laevigata RLG00000017215
rosa_roxburghii Rroxscaffold_2G00139860
rosa_rugosa Rorug02G0112300 Rorug02G0112400
rosa_samantha Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana Rw2G012640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 576
AciI CCGC 1 cut(s) 320
AclWI GGATC 3 cut(s) 204, 379, 566
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 394, 586
AgsI TTSAA 2 cut(s) 277, 485
AjnI CCWGG 2 cut(s) 373, 437
AluBI AGCT 2 cut(s) 79, 121
AluI AGCT 2 cut(s) 79, 121
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 3 cut(s) 204, 379, 566
ApeKI GCWGC 2 cut(s) 89, 173
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 2 cut(s) 492, 521
AsuHPI GGTGA 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 116
BanII GRGCYC 2 cut(s) 81, 592
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 76, 160
BciT130I CCWGG 2 cut(s) 375, 439
BfaI CTAG 2 cut(s) 20, 264
BisI GCNGC 2 cut(s) 90, 174
BlsI GCNGC 2 cut(s) 91, 175
Bme1390I CCNGG 2 cut(s) 375, 439
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 375, 439
BmsI GCATC 3 cut(s) 210, 360, 509
BpiI GAAGAC 1 cut(s) 35
Bpu10I CCTNAGC 2 cut(s) 254, 345
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 65, 386
BsaAI YACGTR 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 586
Bse1I ACTGG 1 cut(s) 399
BseBI CCWGG 2 cut(s) 375, 439
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 2 cut(s) 394, 586
BseMII CTCAG 2 cut(s) 298, 343
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 2 cut(s) 76, 160
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 394, 586
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 81, 592
Bsp143I GATC 3 cut(s) 196, 384, 558
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 297, 342
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 3 cut(s) 204, 379, 566
BspQI GCTCTTC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 116
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 3 cut(s) 196, 384, 558
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 375, 439
Bst4CI ACNGT 3 cut(s) 49, 102, 451
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 254, 284, 329, 345
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 1 cut(s) 476
BstKTI GATC 3 cut(s) 199, 387, 561
BstMBI GATC 3 cut(s) 196, 384, 558
BstMWI GCNNNNNNNGC 3 cut(s) 170, 317, 370
BstNI CCWGG 2 cut(s) 375, 439
BstSCI CCNGG 2 cut(s) 373, 437
BstV1I GCAGC 2 cut(s) 76, 160
BstV2I GAAGAC 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 2 cut(s) 38, 123
BtsCI GGATG 1 cut(s) 476
BtsIMutI CAGTG 2 cut(s) 292, 447
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 607
CviJI RGCY 8 cut(s) 79, 121, 135, 258, 364, 459, 532, 590
CviKI_1 RGCY 8 cut(s) 79, 121, 135, 258, 364, 459, 532, 590
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 4 cut(s) 254, 284, 329, 345
DpnI GATC 3 cut(s) 198, 386, 560
DpnII GATC 3 cut(s) 196, 384, 558
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 81, 592
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 373, 437
EcoT38I GRGCYC 2 cut(s) 81, 592
FaeI CATG 1 cut(s) 610
FaiI YATR 7 cut(s) 11, 71, 244, 426, 428, 492, 608
FatI CATG 1 cut(s) 606
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 2 cut(s) 90, 174
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 2 cut(s) 81, 592
Fsp4HI GCNGC 2 cut(s) 90, 174
FspBI CTAG 2 cut(s) 20, 264
GluI GCNGC 2 cut(s) 90, 174
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 1 cut(s) 510
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 3 cut(s) 67, 332, 384
Hpy188III TCNNGA 2 cut(s) 485, 514
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 3 cut(s) 38, 41, 44
HpyAV CCTTC 2 cut(s) 269, 488
HpyCH4III ACNGT 3 cut(s) 49, 102, 451
HpyCH4IV ACGT 2 cut(s) 39, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 317, 370
HpyF3I CTNAG 4 cut(s) 254, 284, 329, 345
HpySE526I ACGT 2 cut(s) 39, 430
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 610
Kzo9I GATC 3 cut(s) 196, 384, 558
LguI GCTCTTC 1 cut(s) 69
Lsp1109I GCAGC 2 cut(s) 76, 160
LweI GCATC 3 cut(s) 210, 360, 509
MaeI CTAG 2 cut(s) 20, 264
MaeII ACGT 2 cut(s) 39, 430
MaeIII GTNAC 1 cut(s) 473
MalI GATC 3 cut(s) 198, 386, 560
MboI GATC 3 cut(s) 196, 384, 558
MboII GAAGA 7 cut(s) 40, 86, 106, 241, 331, 473, 557
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 81, 592
MluCI AATT 4 cut(s) 61, 155, 189, 205
MnlI CCTC 1 cut(s) 170
MroXI GAANNNNTTC 2 cut(s) 492, 521
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 375, 439
MunI CAATTG 1 cut(s) 205
MvaI CCWGG 2 cut(s) 375, 439
MwoI GCNNNNNNNGC 3 cut(s) 170, 317, 370
NdeII GATC 3 cut(s) 196, 384, 558
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 1 cut(s) 436
NspV TTCGAA 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 492, 521
PfeI GAWTC 1 cut(s) 510
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 91, 175
Ppu21I YACGTR 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 373, 437
PspGI CCWGG 2 cut(s) 373, 437
PspN4I GGNNCC 1 cut(s) 436
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 90, 174
Sau3AI GATC 3 cut(s) 196, 384, 558
ScrFI CCNGG 2 cut(s) 375, 439
SduI GDGCHC 2 cut(s) 81, 592
SetI ASST 8 cut(s) 42, 81, 87, 123, 379, 433, 440, 480
SfaNI GCATC 3 cut(s) 210, 360, 509
SfuI TTCGAA 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 80, 365
SmoI CTYRAG 2 cut(s) 80, 365
Sse9I AATT 4 cut(s) 61, 155, 189, 205
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 20, 264
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 373, 437
TaaI ACNGT 3 cut(s) 49, 102, 451
TaiI ACGT 2 cut(s) 42, 433
TaqI TCGA 3 cut(s) 42, 116, 496
TaqII GACCGA 1 cut(s) 47
TasI AATT 4 cut(s) 61, 155, 189, 205
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 292, 454
TseI GCWGC 2 cut(s) 89, 173
TspDTI ATGAA 2 cut(s) 41, 454
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 2 cut(s) 292, 454
Tth111I GACNNNGTC 1 cut(s) 38
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 2 cut(s) 492, 521
XspI CTAG 2 cut(s) 20, 264
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.