Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014958

Physical Location & Seq

Genomic Coordinates Forward (+)

15905523 .. 15908287

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G145800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGGATGGAGTATTTGGCTCTGAAGAGTAGTGATCCAGACACCAATGAGTTGATAAATTCAGACATCAATGATCTCAAGATTGCAGCCAAGAAACTCATCAATGATGCCACTAAGCTTGGTGGGTTGGGTTTTGGGACTTCTTTTCTCAAATGGGTTGCCTCCTTTGCTGCCATATATCTGTTGATATTGGATCGAACCAACTGGAGAACAAATATGCTGACTTCACTTTTAATCCCTTACATTTTCTTCAGTCTTCCTTCAGTGCTCTTCAACCCCCTAAGAGGAGAGGTTGGAAAATGGATTGCTTTTATTGCTGTTGTACTGAGGCTTTTCTTCCCAAGACATTTCCCAGATTGGCTACAGATGCCCGGTTCGTTGATCCTTCTTCTTGTTGTGGCTCCCAACTTTTTCGCGCACACATTGAAGGACAGCTGGGTTGGTGTCTTGATATGTCTTCTCATTGGTTGTTACCTGCTGCAAGAGCACATCCGGGCTTCAGGTGGCTTCAGAAATTCCTTCACACAGAGCCATGGAATATCAAACACTCTAGGAATTATCCTTCTCTTAGTCTACCCTGTTTGGGCATTGGTTCTCCATTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0016020 GO:0031090 GO:0034284 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

204

Amino Acids

22.84

Weight (kDa)

9.2

Isoelectric Point (pI)

20.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50830
fragaria_vesca	FvH4_1g14460
malus_domestica	MD15G1273000.v1.1
prunus_persica	Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis	pycom15g23620
rosa_chinensis	RchiOBHm_Chr2g0103221
rosa_laevigata	RLG00000017215
rosa_roxburghii	Rroxscaffold_2G00139860
rosa_rugosa	Rorug02G0112300 Rorug02G0112400
rosa_samantha	Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana	Rw2G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	1 cut(s)	419
AclWI	GGATC	3 cut(s)	32, 204, 379
AcsI	RAATTY	2 cut(s)	61, 517
AcuI	CTGAAG	5 cut(s)	47, 238, 249, 486, 496
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	287, 586
AgsI	TTSAA	2 cut(s)	277, 430
AluBI	AGCT	2 cut(s)	121, 438
AluI	AGCT	2 cut(s)	121, 438
Alw21I	GWGCWC	2 cut(s)	273, 492
AlwI	GGATC	3 cut(s)	32, 204, 379
ApeKI	GCWGC	3 cut(s)	89, 173, 481
ApoI	RAATTY	2 cut(s)	61, 517
AspLEI	GCGC	1 cut(s)	421
AsuC2I	CCSGG	2 cut(s)	375, 497
BbsI	GAAGAC	2 cut(s)	251, 452
Bbv12I	GWGCWC	2 cut(s)	273, 492
BbvI	GCAGC	3 cut(s)	101, 160, 468
BccI	CCATC	1 cut(s)	4
BcnI	CCSGG	2 cut(s)	375, 497
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	486
BisI	GCNGC	3 cut(s)	90, 174, 482
BlsI	GCNGC	3 cut(s)	91, 175, 483
Bme1390I	CCNGG	2 cut(s)	375, 497
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	375, 497
BmsI	GCATC	2 cut(s)	100, 360
BpiI	GAAGAC	2 cut(s)	251, 452
BpmI	CTGGAG	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	375, 497
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 586
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	2 cut(s)	15, 492
BseLI	CCNNNNNNNGG	2 cut(s)	287, 586
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	101, 160, 468
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	273, 492
BsiSI	CCGG	2 cut(s)	375, 496
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	287, 586
BsmFI	GGGAC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	273, 492
Bsp143I	GATC	4 cut(s)	37, 76, 196, 384
Bsp19I	CCATGG	1 cut(s)	535
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	32, 204, 379
BspQI	GCTCTTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	4 cut(s)	37, 76, 196, 384
BssT1I	CCWWGG	1 cut(s)	535
Bst6I	CTCTTC	2 cut(s)	23, 278
BstDEI	CTNAG	4 cut(s)	117, 284, 329, 571
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	15, 492
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	40, 79, 199, 387
BstMBI	GATC	4 cut(s)	37, 76, 196, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 487
BstSCI	CCNGG	2 cut(s)	373, 495
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	101, 160, 468
BstV2I	GAAGAC	2 cut(s)	251, 452
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	15, 492
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	486
CfoI	GCGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	326
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	1 cut(s)	536
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	4 cut(s)	117, 284, 329, 571
DpnI	GATC	4 cut(s)	39, 78, 198, 386
DpnII	GATC	4 cut(s)	37, 76, 196, 384
Eam1104I	CTCTTC	2 cut(s)	23, 278
EarI	CTCTTC	2 cut(s)	23, 278
Eco130I	CCWWGG	1 cut(s)	535
Eco57I	CTGAAG	5 cut(s)	47, 238, 249, 486, 496
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	1 cut(s)	539
FaiI	YATR	5 cut(s)	179, 181, 221, 457, 537
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	90, 174, 482
FokI	GGATG	2 cut(s)	22, 479
Fsp4HI	GCNGC	3 cut(s)	90, 174, 482
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	90, 174, 482
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	229
HapII	CCGG	2 cut(s)	375, 496
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	119
HpaII	CCGG	2 cut(s)	375, 496
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	27, 67, 515
Hpy188III	TCNNGA	3 cut(s)	41, 82, 451
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	5 cut(s)	273, 398, 424, 532, 575
HpyCH4V	TGCA	2 cut(s)	89, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 487
HpyF3I	CTNAG	4 cut(s)	117, 284, 329, 571
Hsp92II	CATG	1 cut(s)	539
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	4 cut(s)	37, 76, 196, 384
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	9 cut(s)	54, 193, 369, 388, 424, 489, 491, 509, 594
Lsp1109I	GCAGC	3 cut(s)	101, 160, 468
LweI	GCATC	2 cut(s)	100, 360
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	4 cut(s)	39, 78, 198, 386
MboI	GATC	4 cut(s)	37, 76, 196, 384
MboII	GAAGA	7 cut(s)	40, 244, 251, 265, 331, 383, 452
MhlI	GDGCHC	2 cut(s)	273, 492
MluCI	AATT	3 cut(s)	61, 517, 558
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	175, 281, 286, 324
MseI	TTAA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	2 cut(s)	375, 496
MspR9I	CCNGG	2 cut(s)	375, 497
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 487
NciI	CCSGG	2 cut(s)	375, 497
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	4 cut(s)	37, 76, 196, 384
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	91, 175, 483
PspFI	CCCAGC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	438
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	90, 174, 482
Sau3AI	GATC	4 cut(s)	37, 76, 196, 384
ScrFI	CCNGG	2 cut(s)	375, 497
SduI	GDGCHC	2 cut(s)	273, 492
SetI	ASST	5 cut(s)	123, 297, 440, 480, 508
SfaNI	GCATC	2 cut(s)	100, 360
SfcI	CTRYAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	61, 517, 558
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	373, 495
StyI	CCWWGG	1 cut(s)	535
TaqI	TCGA	1 cut(s)	199
TasI	AATT	3 cut(s)	61, 517, 558
TatI	WGTACW	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	3 cut(s)	89, 173, 481
TspDTI	ATGAA	1 cut(s)	595
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	2 cut(s)	61, 517
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.