Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014958

Physical Location & Seq

Genomic Coordinates Forward (+)

9601920 .. 9603138

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTGATCACGTGCGAAAAAGCTGTTTCGAAACTGCCAATTGTAGTTGTAATTGCTGATTCTGATGAGTCATCTACCAGCTTTAGTTCAGAAACAAAACCAACTTATGAGTATGAAAGTCTTTTAGAGAGTGGAAATGGTGGTTTTGCGATTAAGCGACCGAAGAGTGAATGGGATCCTATCAGTGTGAATTACACCTCTGGCACAACATCAAGGCCGAAGGGGGTTGTCTATAGTCATCGCGCGCAGGGTGGTACTAACATTTGCCTCAGGAAAGTCACTCCAAAAGGCATATTCGACAATATTGCTCTACATAATGTGACACACATGGGAGGGGCACCAACTGTGCTGAACATGATTGTTAATTCACCGGTGAATGACCAAATGCCACTTCCTCACAAGGTGGAAGTAATGACAGGTGGCTCCCCACCACCGCCACAGATCCTGTTCAATATGGAAGAGATGGGTTTTGGGGTGATTCACTTGTATGGTCTCACAGAGACTTATGGTCCAGGTACCTATTGCTCATGGAAACCTGAGTGGGACTCTCTTCCTTCAGATGAGAGATCGAAGCCTAAAGCTCGGCAAGGCGTGCAACATGTTGCTTTGGAAGAGGTTGACATAAAAGATCCTGTCACTATGGAAAGTGTACCGCCTGATGACTTGAAAGCAACAGAGGAGGCTTTTAAGGGTGGATGGTTTAGAAGTGGGGATTTAGCTGTGAAACATCCTGATAACTACATCGAAGTCAAGGACCGGTTGAAGGATGTGATTATATCTGGGGGACAGAACGTAAGCACAGTTGAGGTTGAAACAGTTTTGTTTAGCCATCCATCAGTTCTTGAGGCTGCAGTTGTTGCTAGGCCTGATAATCATTGGGGACAAACTCCTTGTGCATTTGTGAAATTGAAGGACGGCTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0016020 GO:0031090 GO:0034284 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

308

Amino Acids

33.68

Weight (kDa)

5.41

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	14 - 82	8.7e-10	AMP-binding enzyme
AMP-binding	PF00501	83 - 220	4.2e-17	AMP-binding enzyme
AMP-binding_C	PF13193	269 - 306	1.1e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50830
fragaria_vesca	FvH4_1g14460
malus_domestica	MD15G1273000.v1.1
prunus_persica	Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis	pycom15g23620
rosa_chinensis	RchiOBHm_Chr2g0103221
rosa_laevigata	RLG00000017215
rosa_roxburghii	Rroxscaffold_2G00139860
rosa_rugosa	Rorug02G0112300 Rorug02G0112400
rosa_samantha	Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana	Rw2G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	2 cut(s)	337, 515
AccII	CGCG	2 cut(s)	243, 245
AciI	CCGC	2 cut(s)	434, 653
AclWI	GGATC	4 cut(s)	170, 183, 436, 623
AcuI	CTGAAG	1 cut(s)	540
AcvI	CACGTG	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	3 cut(s)	256, 517, 651
AfiI	CCNNNNNNNGG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	598
AgeI	ACCGGT	2 cut(s)	370, 756
AgsI	TTSAA	5 cut(s)	451, 667, 763, 812, 910
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	4 cut(s)	23, 81, 581, 719
AluI	AGCT	4 cut(s)	23, 81, 581, 719
Alw26I	GTCTC	2 cut(s)	494, 497
AlwI	GGATC	4 cut(s)	170, 183, 436, 623
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	215, 863
ApeKI	GCWGC	1 cut(s)	848
AsiGI	ACCGGT	2 cut(s)	370, 756
Asp718I	GGTACC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	245, 247
AspS9I	GGNCC	2 cut(s)	509, 754
AsuHPI	GGTGA	4 cut(s)	16, 360, 385, 487
AsuII	TTCGAA	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	509, 754
AxyI	CCTNAGG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	175
BanI	GGYRCC	2 cut(s)	337, 515
BbrPI	CACGTG	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	835
BccI	CCATC	4 cut(s)	457, 690, 837, 841
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	494, 497
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	2 cut(s)	232, 849
BisI	GCNGC	1 cut(s)	849
BlsI	GCNGC	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	2 cut(s)	509, 754
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	509, 754
BmiI	GGNNCC	4 cut(s)	177, 339, 424, 517
BmrFI	CCNGG	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	497
BsaWI	WCCGGW	2 cut(s)	370, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	2 cut(s)	370, 756
Bse21I	CCTNAGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	4 cut(s)	701, 727, 772, 829
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMII	CTCAG	2 cut(s)	283, 528
BsePI	GCGCGC	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	835
Bsh1236I	CGCG	2 cut(s)	243, 245
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	217, 865
BshNI	GGYRCC	2 cut(s)	337, 515
BshTI	ACCGGT	2 cut(s)	370, 756
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	371, 757
BslFI	GGGAC	3 cut(s)	557, 798, 894
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	2 cut(s)	494, 497
BsmFI	GGGAC	3 cut(s)	557, 798, 894
BsnI	GGCC	2 cut(s)	217, 865
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	6, 175, 441, 566, 628
BspACI	CCGC	2 cut(s)	434, 653
BspANI	GGCC	2 cut(s)	217, 865
BspCNI	CTCAG	2 cut(s)	282, 529
BspFNI	CGCG	2 cut(s)	243, 245
BspLI	GGNNCC	4 cut(s)	177, 339, 424, 517
BspMAI	CTGCAG	1 cut(s)	853
BspPI	GGATC	4 cut(s)	170, 183, 436, 623
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	2 cut(s)	337, 515
BspTNI	GGTCTC	1 cut(s)	497
BsrFI	RCCGGY	2 cut(s)	370, 756
BssAI	RCCGGY	2 cut(s)	370, 756
BssHII	GCGCGC	1 cut(s)	243
BssMI	GATC	5 cut(s)	6, 175, 441, 566, 628
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	346, 802, 817
Bst6I	CTCTTC	4 cut(s)	158, 453, 555, 606
BstAPI	GCANNNNNTGC	2 cut(s)	592, 857
BstBAI	YACGTR	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	245, 593
BstDEI	CTNAG	2 cut(s)	269, 537
BstF5I	GGATG	4 cut(s)	701, 727, 772, 829
BstFNI	CGCG	2 cut(s)	243, 245
BstHHI	GCGC	2 cut(s)	245, 247
BstKTI	GATC	5 cut(s)	9, 178, 444, 569, 631
BstMAI	GTCTC	2 cut(s)	494, 497
BstMBI	GATC	5 cut(s)	6, 175, 441, 566, 628
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	592, 857
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	232, 849
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	2 cut(s)	243, 245
BstV1I	GCAGC	1 cut(s)	835
BstX2I	RGATCY	3 cut(s)	175, 441, 628
BstYI	RGATCY	3 cut(s)	175, 441, 628
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	217, 865
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	701, 727, 772, 829
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	245, 593
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	2 cut(s)	245, 247
Cfr10I	RCCGGY	2 cut(s)	370, 756
Cfr13I	GGNCC	2 cut(s)	509, 754
Csp6I	GTAC	3 cut(s)	255, 516, 650
CspAI	ACCGGT	2 cut(s)	370, 756
CviAII	CATG	4 cut(s)	328, 355, 528, 599
CviQI	GTAC	3 cut(s)	255, 516, 650
DdeI	CTNAG	2 cut(s)	269, 537
DpnI	GATC	5 cut(s)	8, 177, 443, 568, 630
DpnII	GATC	5 cut(s)	6, 175, 441, 566, 628
DraIII	CACNNNGTG	1 cut(s)	403
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1104I	CTCTTC	4 cut(s)	158, 453, 555, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	4 cut(s)	158, 453, 555, 606
Eco147I	AGGCCT	1 cut(s)	865
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	509, 754
Eco57I	CTGAAG	1 cut(s)	540
Eco72I	CACGTG	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	4 cut(s)	331, 358, 531, 602
FalI	AAGNNNNNCTT	1 cut(s)	902
FaqI	GGGAC	3 cut(s)	557, 798, 894
FatI	CATG	4 cut(s)	327, 354, 527, 598
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	4 cut(s)	708, 714, 779, 816
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	2 cut(s)	244, 246
GluI	GCNGC	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	217, 865
HapII	CCGG	2 cut(s)	371, 757
HhaI	GCGC	2 cut(s)	245, 247
Hin1II	CATG	4 cut(s)	331, 358, 531, 602
Hin6I	GCGC	2 cut(s)	243, 245
HinP1I	GCGC	2 cut(s)	243, 245
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	59, 68, 478, 545
HpaII	CCGG	2 cut(s)	371, 757
HphI	GGTGA	4 cut(s)	16, 360, 385, 487
Hpy166II	GTNNAC	2 cut(s)	619, 650
Hpy188I	TCNGA	3 cut(s)	64, 91, 559
Hpy188III	TCNNGA	3 cut(s)	271, 731, 842
Hpy8I	GTNNAC	2 cut(s)	619, 650
HpyAV	CCTTC	4 cut(s)	214, 564, 757, 904
HpyCH4III	ACNGT	3 cut(s)	346, 802, 817
HpyCH4IV	ACGT	2 cut(s)	11, 792
HpyCH4V	TGCA	3 cut(s)	595, 851, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	592, 857
HpyF3I	CTNAG	2 cut(s)	269, 537
HpySE526I	ACGT	2 cut(s)	11, 792
Hsp92II	CATG	4 cut(s)	331, 358, 531, 602
HspAI	GCGC	2 cut(s)	243, 245
KpnI	GGTACC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	6, 175, 441, 566, 628
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	2 cut(s)	11, 792
MaeIII	GTNAC	3 cut(s)	277, 319, 634
MalI	GATC	5 cut(s)	8, 177, 443, 568, 630
MboI	GATC	5 cut(s)	6, 175, 441, 566, 628
MboII	GAAGA	4 cut(s)	175, 470, 542, 623
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	3 cut(s)	175, 441, 628
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	6 cut(s)	39, 51, 190, 364, 905, 922
MlyI	GAGTC	2 cut(s)	77, 539
MnlI	CCTC	9 cut(s)	208, 278, 326, 405, 607, 670, 673, 799, 838
MseI	TTAA	5 cut(s)	153, 363, 687, 921, 925
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	2 cut(s)	371, 757
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	2 cut(s)	243, 245
MwoI	GCNNNNNNNGC	2 cut(s)	592, 857
NdeII	GATC	5 cut(s)	6, 175, 441, 566, 628
NlaIII	CATG	4 cut(s)	331, 358, 531, 602
NlaIV	GGNNCC	4 cut(s)	177, 339, 424, 517
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	3 cut(s)	277, 319, 634
NspI	RCATGY	1 cut(s)	602
NspV	TTCGAA	1 cut(s)	29
PacI	TTAATTAA	1 cut(s)	925
PauI	GCGCGC	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	865
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	59, 478
PinAI	ACCGGT	2 cut(s)	370, 756
PkrI	GCNGC	1 cut(s)	850
PleI	GAGTC	2 cut(s)	76, 539
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	2 cut(s)	76, 539
Ppu21I	YACGTR	1 cut(s)	12
PscI	ACATGT	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	511
PspCI	CACGTG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	4 cut(s)	177, 339, 424, 517
PspPI	GGNCC	2 cut(s)	509, 754
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	175, 441, 628
PteI	GCGCGC	1 cut(s)	243
RsaI	GTAC	3 cut(s)	256, 517, 651
RsaNI	GTAC	3 cut(s)	255, 516, 650
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	153, 363, 687, 921, 925
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	5 cut(s)	6, 175, 441, 566, 628
Sau96I	GGNCC	2 cut(s)	509, 754
SchI	GAGTC	2 cut(s)	77, 539
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	232, 849
SfuI	TTCGAA	1 cut(s)	29
SgrAI	CRCCGGYG	1 cut(s)	370
SinI	GGWCC	2 cut(s)	509, 754
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	6 cut(s)	39, 51, 190, 364, 905, 922
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	2 cut(s)	434, 653
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	346, 802, 817
TaiI	ACGT	2 cut(s)	14, 795
TaqI	TCGA	4 cut(s)	29, 297, 569, 744
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	6 cut(s)	39, 51, 190, 364, 905, 922
TfiI	GAWTC	2 cut(s)	59, 478
Tru1I	TTAA	5 cut(s)	153, 363, 687, 921, 925
Tru9I	TTAA	5 cut(s)	153, 363, 687, 921, 925
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	3 cut(s)	277, 319, 634
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	3 cut(s)	277, 319, 634
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	509, 754
XceI	RCATGY	1 cut(s)	602
XspI	CTAG	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.