Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014958

Physical Location & Seq

Genomic Coordinates Reverse (-)

15044603 .. 15047618

Gene Structure 3016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG168100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTGACTTCACTCCTAGTTCCTTATATTTTCTTTAGTCTTCCTTGGGGGCTGTTCCACTTACTGAGAGGAGAGGTTGGAAGCTGGATTGCTTTTGTTGCTGTTGTATTAAGGCTTTTCTTCCCAAGACATTTCCCAGATTGGCTGGAGATGCCGGGTTCTCTGATCCTTCTTCTGGTTGTGGCTCCAAGCTTCTTCGCAGAAACCTTGAAGGAGAGCTGGGTTGGCGTCCTGATATGTCTCCTCATTGGATGTTACCTGCTGCAAGAGCACATCCGGTCATCTGGTGGATTCAGAAATTCATTCACACAAAGCCATGGAATATCAAACACTCTCGTTCAAAATTCGGTTTCTGCTTCTGCCCCGAAATTTGAACATGCAAAGACTGGAATATGGAATGGAACCTTGTTTGTGACTGAGGCTCTTCATTTATATCCTCAAGAGCACTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0016020 GO:0031090 GO:0034284 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

151

Amino Acids

16.99

Weight (kDa)

7.06

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	1 - 112	1.3e-58	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50830
fragaria_vesca	FvH4_1g14460
malus_domestica	MD15G1273000.v1.1
prunus_persica	Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis	pycom15g23620
rosa_chinensis	RchiOBHm_Chr2g0103221
rosa_laevigata	RLG00000017215
rosa_roxburghii	Rroxscaffold_2G00139860
rosa_rugosa	Rorug02G0112300 Rorug02G0112400
rosa_samantha	Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana	Rw2G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	298, 343, 368
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	211, 341, 374
AluBI	AGCT	3 cut(s)	84, 192, 219
AluI	AGCT	3 cut(s)	84, 192, 219
Alw21I	GWGCWC	2 cut(s)	273, 447
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	3 cut(s)	298, 343, 368
AsuC2I	CCSGG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	273, 447
BbvI	GCAGC	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	186, 403
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	44, 316
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	44, 316
BseGI	GGATG	2 cut(s)	257, 273
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	56, 408
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	2 cut(s)	84, 233
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	273, 447
BsiSI	CCGG	2 cut(s)	155, 277
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	273, 447
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	57, 409
BspLI	GGNNCC	2 cut(s)	186, 403
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	44, 316
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	44, 316
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	65, 417
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	257, 273
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 151, 225, 268
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	257, 273
BveI	ACCTGC	1 cut(s)	267
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	317, 377
CviJI	RGCY	9 cut(s)	52, 84, 115, 145, 185, 192, 219, 315, 422
CviKI_1	RGCY	9 cut(s)	52, 84, 115, 145, 185, 192, 219, 315, 422
DdeI	CTNAG	2 cut(s)	65, 417
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	44, 316
EcoT14I	CCWWGG	2 cut(s)	44, 316
ErhI	CCWWGG	2 cut(s)	44, 316
FaeI	CATG	2 cut(s)	320, 380
FaiI	YATR	6 cut(s)	27, 238, 318, 378, 394, 433
FatI	CATG	2 cut(s)	316, 376
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	2 cut(s)	260, 264
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	167
HapII	CCGG	2 cut(s)	155, 277
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	320, 380
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	155, 277
Hpy188I	TCNGA	2 cut(s)	165, 296
Hpy188III	TCNNGA	2 cut(s)	232, 440
HpyAV	CCTTC	2 cut(s)	179, 205
HpyCH4V	TGCA	2 cut(s)	265, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 151, 225, 268
HpyF3I	CTNAG	2 cut(s)	65, 417
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	320, 380
Kzo9I	GATC	1 cut(s)	165
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	254, 412
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	5 cut(s)	32, 112, 164, 187, 416
MhlI	GDGCHC	2 cut(s)	273, 447
MluCI	AATT	3 cut(s)	298, 343, 368
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	62, 67, 254, 412, 447
MseI	TTAA	1 cut(s)	110
MspI	CCGG	2 cut(s)	155, 277
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	98, 151, 225, 268
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	320, 380
NlaIV	GGNNCC	2 cut(s)	186, 403
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	186, 403
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	273, 447
SetI	ASST	7 cut(s)	78, 86, 194, 209, 221, 261, 407
SfaNI	GCATC	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	3 cut(s)	298, 343, 368
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	44, 316
TasI	AATT	3 cut(s)	298, 343, 368
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	291, 416
XapI	RAATTY	3 cut(s)	298, 343, 368
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.