Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014958

Physical Location & Seq

Genomic Coordinates Reverse (-)

23820879 .. 23824108

Gene Structure 3230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1273000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGGAGGAAGGGGATGGAGTATCTGGCTCTGAAAAGTGATGACCCGGAAACTAGTGAGTTGATAGATTCAGATATCAAAGAGCTCAAGATTGCAGCCAAGAGACTCATCAGTGATGCCACCAAACTTGGTGGTTTGGGTTTTGGGACTTCTTTTCTCAAATGGGTTGCCTTCTTTGCCGCCATATATTTGTTGATACTGGACCGGACAAACTGGAGAACAAATATGCTGACTTCACTTTTAATCCCCTTCATTTTCTTCAGTCTTCCTTCAGTGCTGTTCGACCTCCTAAGAGGAGAGGTGGGAAGATGGATTGCTTTTGTTGCCGTTGTACTGAGGCTTTTCTTCCCAAGGCATTTCCCGGATTGGCTAGAGATGCCGGGATCATTGATCCTTCTTCTGGTCGTGGCTCCAAACTTCTTTGCGCACACTTTGAAGGACAGCTGGGTTGGCGTCTTGATCTGTCTTCTCATCGGTTGTTACCTGCTGCAAGAGCACATCCGGGCATCAGGTGGATTCCGAAATTCTTTTACACAAAGGCAGGGAATATCGAACACGCTCGGAATCATCCTTCTCTTGGTCTACCCTGTCTGGGCATTGGTTCTCCATTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0016020 GO:0031090 GO:0034284 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

8.97

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	15 - 192	4.5e-90	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50830
fragaria_vesca	FvH4_1g14460
malus_domestica	MD15G1273000.v1.1
prunus_persica	Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis	pycom15g23620
rosa_chinensis	RchiOBHm_Chr2g0103221
rosa_laevigata	RLG00000017215
rosa_roxburghii	Rroxscaffold_2G00139860
rosa_rugosa	Rorug02G0112300 Rorug02G0112400
rosa_samantha	Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana	Rw2G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	385, 391
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	2 cut(s)	244, 255
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	400, 577, 592
AgsI	TTSAA	1 cut(s)	436
AhlI	ACTAGT	1 cut(s)	53
AluBI	AGCT	2 cut(s)	85, 444
AluI	AGCT	2 cut(s)	85, 444
Alw21I	GWGCWC	2 cut(s)	87, 498
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	385, 391
ApeKI	GCWGC	2 cut(s)	95, 487
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	4 cut(s)	47, 362, 381, 503
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	257, 458
Bbv12I	GWGCWC	2 cut(s)	87, 498
BbvI	GCAGC	2 cut(s)	107, 474
BccI	CCATC	2 cut(s)	10, 303
BceAI	ACGGC	1 cut(s)	311
BcnI	CCSGG	4 cut(s)	47, 362, 381, 503
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	2 cut(s)	54, 371
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	3 cut(s)	96, 180, 488
BlsI	GCNGC	3 cut(s)	97, 181, 489
Bme1390I	CCNGG	4 cut(s)	47, 362, 381, 503
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	47, 362, 381, 503
BmsI	GCATC	3 cut(s)	106, 366, 515
BpiI	GAAGAC	2 cut(s)	257, 458
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	4 cut(s)	47, 362, 381, 503
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 577, 592
Bse1I	ACTGG	2 cut(s)	204, 218
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	21, 498, 567
BseLI	CCNNNNNNNGG	3 cut(s)	400, 577, 592
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	204, 218
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	107, 474
BseYI	CCCAGC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	87, 498
BsiSI	CCGG	5 cut(s)	47, 205, 362, 380, 502
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	400, 577, 592
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	87, 498
Bsp143I	GATC	3 cut(s)	383, 390, 459
BspACI	CCGC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	385, 391
BsrI	ACTGG	2 cut(s)	204, 218
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	383, 390, 459
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	290, 335
BstF5I	GGATG	3 cut(s)	21, 498, 567
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	386, 393, 462
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	3 cut(s)	383, 390, 459
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 323, 376, 450, 493
BstSCI	CCNGG	4 cut(s)	45, 360, 379, 501
BstV1I	GCAGC	2 cut(s)	107, 474
BstV2I	GAAGAC	2 cut(s)	257, 458
BtsCI	GGATG	3 cut(s)	21, 498, 567
BtsIMutI	CAGTG	2 cut(s)	118, 279
BveI	ACCTGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	332
CspCI	CAANNNNNGTGG	4 cut(s)	109, 112, 144, 147
CviJI	RGCY	7 cut(s)	29, 85, 98, 340, 370, 410, 444
CviKI_1	RGCY	7 cut(s)	29, 85, 98, 340, 370, 410, 444
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	290, 335
DpnI	GATC	3 cut(s)	385, 392, 461
DpnII	GATC	3 cut(s)	383, 390, 459
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	244, 255
EcoICRI	GAGCTC	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	350
FaiI	YATR	3 cut(s)	185, 187, 227
FaqI	GGGAC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	96, 180, 488
FokI	GGATG	3 cut(s)	28, 485, 554
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	96, 180, 488
FspBI	CTAG	2 cut(s)	54, 371
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	3 cut(s)	96, 180, 488
GsaI	CCCAGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	235
HapII	CCGG	5 cut(s)	47, 205, 362, 380, 502
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	453
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	68, 105, 516, 564
HpaII	CCGG	5 cut(s)	47, 205, 362, 380, 502
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	33, 73, 521, 563
Hpy188III	TCNNGA	2 cut(s)	88, 457
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	7 cut(s)	4, 181, 259, 279, 404, 430, 581
HpyCH4V	TGCA	2 cut(s)	95, 490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 323, 376, 450, 493
HpyF3I	CTNAG	2 cut(s)	290, 335
Hsp92I	GRCGYC	1 cut(s)	453
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	383, 390, 459
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	107, 474
LweI	GCATC	3 cut(s)	106, 366, 515
MaeI	CTAG	2 cut(s)	54, 371
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	3 cut(s)	385, 392, 461
MboI	GATC	3 cut(s)	383, 390, 459
MboII	GAAGA	6 cut(s)	250, 257, 318, 337, 389, 458
MhlI	GDGCHC	2 cut(s)	87, 498
MluCI	AATT	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	287, 292, 296, 330
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	5 cut(s)	47, 205, 362, 380, 502
MspR9I	CCNGG	4 cut(s)	47, 362, 381, 503
MwoI	GCNNNNNNNGC	5 cut(s)	176, 323, 376, 450, 493
NciI	CCSGG	4 cut(s)	47, 362, 381, 503
NdeII	GATC	3 cut(s)	383, 390, 459
NlaIV	GGNNCC	1 cut(s)	411
NsbI	TGCGCA	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	68, 516, 564
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	97, 181, 489
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	444
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	96, 180, 488
Sau3AI	GATC	3 cut(s)	383, 390, 459
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	4 cut(s)	47, 362, 381, 503
SduI	GDGCHC	2 cut(s)	87, 498
SetI	ASST	6 cut(s)	87, 288, 303, 446, 486, 514
SfaNI	GCATC	3 cut(s)	106, 366, 515
SinI	GGWCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	54, 371
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	4 cut(s)	45, 360, 379, 501
StyI	CCWWGG	1 cut(s)	350
TaqI	TCGA	2 cut(s)	282, 551
TasI	AATT	1 cut(s)	523
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	68, 516, 564
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	118, 279
TseI	GCWGC	2 cut(s)	95, 487
TspDTI	ATGAA	2 cut(s)	241, 601
TspRI	CASTG	2 cut(s)	118, 279
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	2 cut(s)	54, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.