Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014958

Physical Location & Seq

Genomic Coordinates Reverse (-)

8077327 .. 8079974

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGGGTGGACTATTTGGCTATGAAAACTGACCCAGTTGCGGCCAATGAGTTGATGAATTCCGATATCAACGAGCTTAAGATTGCGGTCCAGAGACTCATCAGCGATGCTACTAGGCTCGGTGGGATTGGTTTCGGTACTACTGTTCTCAAATGGCTTGCCTCCTGTGCTGCCATTTATTTGTTGGTATTGGATCGAACAAACTGGAGAACAAATATGCTCACTTCACTCCTAGTCCCTTACATTTTCTTTAGTCTTCCTTGGGGGATCTTCGACTTACTGAGAGGAGAGGTTGGAAGTTGGATCGCTTTTGTTGCTGTTGTATTGAGGCTTTTCTTCCCAAGGCATTTCCCAGATTGGCTGGAGATGCCGGGTTCTCTTATCCTTCTTCTAGTTGTGGCTCCAGATTTCTTCGCAGAAACCTTGAAGGAGAGCTGGGTCGGCGTCCTAATATGTTTGCTCATTGGATGTTACCTGTTGCAAGAGCACATCCGGTCATCAGGTGGGTTCAGAAATTCATTTACGCAAAGCCATGGAATATCAAACACTCTTGGTATTATCCTTCTCTTGGTCTTCCCTGTATGGGCATTGATCGTCCATTTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0016020 GO:0031090 GO:0034284 GO:0034285 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

204

Amino Acids

22.77

Weight (kDa)

6.4

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	10 - 190	1.3e-87	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50830
fragaria_vesca	FvH4_1g14460
malus_domestica	MD15G1273000.v1.1
prunus_persica	Prupe.7G145800_v2.0.a1 Prupe.7G145800_v2.0.a1
pyrus_communis	pycom15g23620
rosa_chinensis	RchiOBHm_Chr2g0103221
rosa_laevigata	RLG00000017215
rosa_roxburghii	Rroxscaffold_2G00139860
rosa_rugosa	Rorug02G0112300 Rorug02G0112400
rosa_samantha	Rh2AG161100 Rh2BG167900 Rh2CG168100 Rh2DG166800
rosa_wichuraiana	Rw2G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 89
AclWI	GGATC	3 cut(s)	204, 278, 314
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	61, 517
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	43, 571, 586
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	2 cut(s)	79, 438
AluI	AGCT	2 cut(s)	79, 438
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	3 cut(s)	204, 278, 314
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	61, 517
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BbsI	GAAGAC	2 cut(s)	251, 568
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	117, 236, 395
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	45, 174
BlsI	GCNGC	2 cut(s)	46, 175
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	100, 360
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	2 cut(s)	251, 568
BpmI	CTGGAG	3 cut(s)	229, 386, 390
BpuMI	CCSGG	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	263, 344, 535
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 571, 586
Bse1I	ACTGG	2 cut(s)	38, 212
BseDI	CCNNGG	3 cut(s)	263, 344, 535
BseGI	GGATG	2 cut(s)	476, 492
BseLI	CCNNNNNNNGG	3 cut(s)	43, 571, 586
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	38, 212
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	438
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	374, 496
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	43, 571, 586
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	196, 270, 306, 594
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	2 cut(s)	44, 89
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	204, 278, 314
BspTI	CTTAAG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	38, 212
BssECI	CCNNGG	3 cut(s)	263, 344, 535
BssMI	GATC	4 cut(s)	196, 270, 306, 594
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	3 cut(s)	263, 344, 535
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	476, 492
BstKTI	GATC	4 cut(s)	199, 273, 309, 597
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	196, 270, 306, 594
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 444
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	251, 568
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	535
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	476, 492
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	536
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	4 cut(s)	198, 272, 308, 596
DpnII	GATC	4 cut(s)	196, 270, 306, 594
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	3 cut(s)	263, 344, 535
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	3 cut(s)	263, 344, 535
ErhI	CCWWGG	3 cut(s)	263, 344, 535
FaeI	CATG	1 cut(s)	539
FaiI	YATR	5 cut(s)	26, 221, 457, 537, 586
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	45, 174
FokI	GGATG	2 cut(s)	479, 483
Fsp4HI	GCNGC	2 cut(s)	45, 174
FspBI	CTAG	3 cut(s)	117, 236, 395
GluI	GCNGC	2 cut(s)	45, 174
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	3 cut(s)	229, 386, 390
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	374, 496
HgaI	GACGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	539
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	2 cut(s)	374, 496
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	67, 515
Hpy188III	TCNNGA	2 cut(s)	94, 407
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	398, 424, 575
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 444
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	196, 270, 306, 594
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	100, 360
MaeI	CTAG	3 cut(s)	117, 236, 395
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	4 cut(s)	198, 272, 308, 596
MboI	GATC	4 cut(s)	196, 270, 306, 594
MboII	GAAGA	6 cut(s)	251, 265, 331, 383, 406, 568
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	61, 517
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	2 cut(s)	277, 284
MnlI	CCTC	4 cut(s)	175, 281, 286, 324
MseI	TTAA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	2 cut(s)	374, 496
MspR9I	CCNGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	170, 317, 370, 444
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	4 cut(s)	196, 270, 306, 594
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PkrI	GCNGC	2 cut(s)	46, 175
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	45, 174
Sau3AI	GATC	4 cut(s)	196, 270, 306, 594
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	6 cut(s)	81, 297, 428, 440, 480, 508
SfaNI	GCATC	2 cut(s)	100, 360
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	61, 517
SsiI	CCGC	2 cut(s)	44, 89
SspMI	CTAG	3 cut(s)	117, 236, 395
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	3 cut(s)	263, 344, 535
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	199, 276
TasI	AATT	2 cut(s)	61, 517
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	41, 74, 510
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	61, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	3 cut(s)	117, 236, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.