AT3G50940

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18933751 .. 18935611
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50940.1

Sequence Viewer

Length: 1356 bp
ATGAGTTCCTCTAGTGAATCTCATCTAGCCACCGCCAAAACAGCTCTCACAGCGGTTGCATCAGTTGCTGCAGCCGCAATACTAGCTCGATCAGTGGTTCAAGATTACATGCCAAACGAGGTTCATGAATATATCTCTCACGGCTTTCGCAGATTCTTCAGCTACTTCTCTTATCAGATGACAGCTGTAATAGAAGAATTTGGAGGTTTTGAACACAACCAAGTGTTTGAAGCTGCAGAGGCTTATCTCTCCACCAAGATATCTAATTCCACTAGAAGAATCAAAGTTAACAAACTTGAGAAACAGAGCAATTATAGTGTTACTGTTGAACGTGATGAGGAAGTTGTTGATATTTTTGATGGCGTCAAGCTTAGTTGGATCCTTGTATGTCGCCATGTCGATAAAAAGGATTTTCGTAACCCGAGAGATCTCAACTCCACTTTGAAATCAGAAGTGCGTAGTTACGAGCTTAGTTTCCGAAAGAAGTTCAAGAACATGGTTCTTGAATCTTATTTACCGTTTGTTGTGGAACAAGCTGCTTCTATTAAACAAAAGTTTAAAACATTGAAGATCTTCACCGTTGATTCTTACTCCGTGGAGTGGACCTCTGTGACTCTAGATCATCCTTCCACGTTTCGCACTCTCGCTCTGGATCCCGAGGTGAAGAAAAACTTGGTGGAGGATCTTGATCGATTCGTGCAGCGGAAAGGCTTTTACGGGAGAGTTGGAAAAGCTTGGAAGAGAGGTTATTTGTTGTATGGTCCTCCCGGTACTGGAAAATCAAGCTTGATCGCAGCTATAGCTAATCATCTTAACTTCGATATCTATGACTTAGACTTGACATCACTTAACAACAATGCTGAGCTACGGAGGTTACTTATGTCTACTGCAAATCGTTCCATTCTAGTTGTGGAAGATATAGATTGTTCAATCGAGTTAAAAGATCGGTCTACTGATCAAGAAAACAACGATCCGTTACATAAAACGGTCACACTCTCTGGTCTATTGAATTTTGTAGACGGACTATGGTCAAGTTGTGGTAACGAGCGGATTATAGTGTTTACGACTAACTACAGAGAAAAATTGGATCCAGCATTGTTGAGGCCAGGACGTATGGACATGCACATTCACATGTCGTATTGCACACCAGCTGCTTTTAAGGTTTTGGCTTCGAATTATCTCGAGATTCAAGATCATATACTTTTCGAGCAGATTGAAGAATTTATCCGAGAAATTGAAGTTACACCAGCAGAAGTAGCTGAACAACTGATGAGGAGTGACTCTGTGGATAAAGTACTCCAAGGACTTGTTGAGTTCTTAAAAGCCAAGAAGCAAATAGATAATTCAAAAGCTTAG

Protein Analysis

451

Amino Acids

51.47

Weight (kDa)

6.3

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 37 - 130 1.8e-28 Domain associated at C-terminal with AAA
AAA PF00004 250 - 379 3.1e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 381 - 450 7e-26 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1048
AccI GTMKAC 3 cut(s) 884, 950, 1017
AciI CCGC 5 cut(s) 33, 53, 75, 703, 1048
AclWI GGATC 8 cut(s) 373, 386, 647, 660, 690, 965, 1082, 1095
AcsI RAATTY 3 cut(s) 197, 1009, 1220
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 2 cut(s) 772, 1296
AfiI CCNNNNNNNGG 2 cut(s) 600, 773
AflIII ACRYGT 1 cut(s) 1131
AjnI CCWGG 1 cut(s) 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AlwI GGATC 8 cut(s) 373, 386, 647, 660, 690, 965, 1082, 1095
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 3 cut(s) 421, 656, 1181
AoxI GGCC 1 cut(s) 1103
ApeKI GCWGC 7 cut(s) 68, 71, 233, 536, 700, 794, 1151
ApoI RAATTY 3 cut(s) 197, 1009, 1220
Asp700I GAANNNNTTC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 603, 761
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 2 cut(s) 568, 673
AsuII TTCGAA 1 cut(s) 1172
AvaI CYCGRG 3 cut(s) 421, 656, 1181
AvaII GGWCC 2 cut(s) 603, 761
BamHI GGATCC 3 cut(s) 378, 652, 1087
BbvI GCAGC 7 cut(s) 55, 83, 220, 523, 712, 806, 1138
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 1107
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 1 cut(s) 768
BfaI CTAG 6 cut(s) 12, 26, 83, 273, 617, 905
BfmI CTRYAG 4 cut(s) 69, 234, 798, 1072
BglII AGATCT 2 cut(s) 427, 570
BisI GCNGC 8 cut(s) 69, 72, 75, 234, 537, 701, 795, 1152
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 8 cut(s) 70, 73, 76, 235, 538, 702, 796, 1153
BmcAI AGTACT 1 cut(s) 1296
Bme1390I CCNGG 2 cut(s) 768, 1107
Bme18I GGWCC 2 cut(s) 603, 761
BmeT110I CYCGRG 3 cut(s) 421, 656, 1181
BmgT120I GGNCC 2 cut(s) 603, 761
BmiI GGNNCC 3 cut(s) 380, 654, 1089
BmrFI CCNGG 2 cut(s) 768, 1107
BmsI GCATC 1 cut(s) 68
BoxI GACNNNNGTC 1 cut(s) 1027
BplI GAGNNNNNCTC 2 cut(s) 590, 622
Bpu1102I GCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 1 cut(s) 1172
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 768
Bsa29I ATCGAT 1 cut(s) 691
BsaBI GATNNNNATC 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 594, 657, 1300
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 773
Bse1I ACTGG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 1107
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 3 cut(s) 594, 657, 1300
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 2 cut(s) 600, 773
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 1 cut(s) 1288
BseXI GCAGC 7 cut(s) 55, 83, 220, 523, 712, 806, 1138
BsgI GTGCAG 1 cut(s) 719
BshFI GGCC 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 691
BsiHKCI CYCGRG 3 cut(s) 421, 656, 1181
BsiSI CCGG 1 cut(s) 768
BslI CCNNNNNNNGG 2 cut(s) 600, 773
BsnI GGCC 1 cut(s) 1105
BsoBI CYCGRG 3 cut(s) 421, 656, 1181
Bsp119I TTCGAA 1 cut(s) 1172
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 5 cut(s) 33, 53, 75, 703, 1048
BspANI GGCC 1 cut(s) 1105
BspCNI CTCAG 1 cut(s) 853
BspDI ATCGAT 1 cut(s) 691
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 380, 654, 1089
BspMAI CTGCAG 2 cut(s) 73, 238
BspPI GGATC 8 cut(s) 373, 386, 647, 660, 690, 965, 1082, 1095
BspT104I TTCGAA 1 cut(s) 1172
BsrBI CCGCTC 1 cut(s) 1048
BsrI ACTGG 1 cut(s) 778
BssECI CCNNGG 3 cut(s) 594, 657, 1300
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 1300
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 4 cut(s) 325, 519, 580, 988
Bst6I CTCTTC 1 cut(s) 734
BstACI GRCGYC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 1172
BstDEI CTNAG 5 cut(s) 371, 470, 832, 861, 1353
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 622
BstMWI GCNNNNNNNGC 8 cut(s) 41, 50, 65, 74, 83, 239, 800, 1256
BstNI CCWGG 1 cut(s) 1107
BstNSI RCATGY 3 cut(s) 112, 1123, 1135
BstPAI GACNNNNGTC 1 cut(s) 1027
BstSCI CCNGG 2 cut(s) 766, 1105
BstSFI CTRYAG 4 cut(s) 69, 234, 798, 1072
BstV1I GCAGC 7 cut(s) 55, 83, 220, 523, 712, 806, 1138
BstX2I RGATCY 6 cut(s) 378, 427, 570, 652, 682, 1087
BstYI RGATCY 6 cut(s) 378, 427, 570, 652, 682, 1087
Bsu15I ATCGAT 1 cut(s) 691
BsuRI GGCC 1 cut(s) 1105
BsuTUI ATCGAT 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 603, 761
ClaI ATCGAT 1 cut(s) 691
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 771, 1295
CviAII CATG 6 cut(s) 109, 125, 395, 496, 1120, 1132
CviQI GTAC 2 cut(s) 771, 1295
DdeI CTNAG 5 cut(s) 371, 470, 832, 861, 1353
DraI TTTAAA 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 1300
Eco32I GATATC 2 cut(s) 261, 823
Eco47I GGWCC 2 cut(s) 603, 761
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 3 cut(s) 421, 656, 1181
EcoRII CCWGG 1 cut(s) 1105
EcoRV GATATC 2 cut(s) 261, 823
EcoT14I CCWWGG 1 cut(s) 1300
ErhI CCWWGG 1 cut(s) 1300
FaeI CATG 6 cut(s) 112, 128, 398, 499, 1123, 1135
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 6 cut(s) 108, 124, 394, 495, 1119, 1131
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 3 cut(s) 884, 950, 1017
Fnu4HI GCNGC 8 cut(s) 69, 72, 75, 234, 537, 701, 795, 1152
FokI GGATG 1 cut(s) 609
Fsp4HI GCNGC 8 cut(s) 69, 72, 75, 234, 537, 701, 795, 1152
FspBI CTAG 6 cut(s) 12, 26, 83, 273, 617, 905
GluI GCNGC 8 cut(s) 69, 72, 75, 234, 537, 701, 795, 1152
HaeIII GGCC 1 cut(s) 1105
HapII CCGG 1 cut(s) 768
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 6 cut(s) 112, 128, 398, 499, 1123, 1135
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 4 cut(s) 368, 732, 784, 1350
HinfI GANTC 9 cut(s) 17, 153, 279, 506, 584, 613, 693, 1186, 1280
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 1 cut(s) 768
HphI GGTGA 2 cut(s) 568, 673
Hpy166II GTNNAC 6 cut(s) 289, 603, 885, 951, 1018, 1062
Hpy188I TCNGA 4 cut(s) 177, 451, 479, 1229
Hpy8I GTNNAC 6 cut(s) 289, 603, 885, 951, 1018, 1062
HpyAV CCTTC 1 cut(s) 636
HpyCH4III ACNGT 4 cut(s) 325, 519, 580, 988
HpyCH4IV ACGT 3 cut(s) 331, 632, 1111
HpyCH4V TGCA 7 cut(s) 59, 71, 236, 700, 890, 1123, 1143
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 50, 65, 74, 83, 239, 800, 1256
HpyF3I CTNAG 5 cut(s) 371, 470, 832, 861, 1353
HpySE526I ACGT 3 cut(s) 331, 632, 1111
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 6 cut(s) 112, 128, 398, 499, 1123, 1135
Ksp22I TGATCA 1 cut(s) 955
KspAI GTTAAC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 635, 759, 781, 984, 1092, 1104, 1119, 1161, 1260
Lsp1109I GCAGC 7 cut(s) 55, 83, 220, 523, 712, 806, 1138
LweI GCATC 1 cut(s) 68
MaeI CTAG 6 cut(s) 12, 26, 83, 273, 617, 905
MaeII ACGT 3 cut(s) 331, 632, 1111
MbiI CCGCTC 1 cut(s) 1048
MboII GAAGA 9 cut(s) 148, 206, 288, 565, 580, 676, 751, 926, 1229
MflI RGATCY 6 cut(s) 378, 427, 570, 652, 682, 1087
MluCI AATT 9 cut(s) 197, 265, 310, 1009, 1082, 1174, 1220, 1233, 1342
MlyI GAGTC 2 cut(s) 607, 1274
MmeI TCCRAC 2 cut(s) 356, 706
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 8 cut(s) 288, 546, 558, 813, 849, 938, 1158, 1319
MslI CAYNNNNRTG 1 cut(s) 1130
MspA1I CMGCKG 4 cut(s) 53, 185, 703, 1151
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 2 cut(s) 768, 1107
MvaI CCWGG 1 cut(s) 1107
MwoI GCNNNNNNNGC 8 cut(s) 41, 50, 65, 74, 83, 239, 800, 1256
NciI CCSGG 1 cut(s) 768
NlaIII CATG 6 cut(s) 112, 128, 398, 499, 1123, 1135
NlaIV GGNNCC 3 cut(s) 380, 654, 1089
NmuCI GTSAC 3 cut(s) 610, 988, 1277
NspI RCATGY 3 cut(s) 112, 1123, 1135
NspV TTCGAA 1 cut(s) 1172
PaeR7I CTCGAG 1 cut(s) 1181
PagI TCATGA 1 cut(s) 124
PciI ACATGT 1 cut(s) 1131
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 7 cut(s) 17, 153, 279, 506, 584, 693, 1186
PkrI GCNGC 8 cut(s) 70, 73, 76, 235, 538, 702, 796, 1153
PleI GAGTC 2 cut(s) 607, 1274
PpsI GAGTC 2 cut(s) 607, 1274
PscI ACATGT 1 cut(s) 1131
PshAI GACNNNNGTC 1 cut(s) 1027
Psp6I CCWGG 1 cut(s) 1105
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 3 cut(s) 380, 654, 1089
PspPI GGNCC 2 cut(s) 603, 761
PstI CTGCAG 2 cut(s) 73, 238
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 6 cut(s) 378, 427, 570, 652, 682, 1087
PvuII CAGCTG 2 cut(s) 185, 1151
RsaI GTAC 2 cut(s) 772, 1296
RsaNI GTAC 2 cut(s) 771, 1295
RseI CAYNNNNRTG 1 cut(s) 1130
SaqAI TTAA 8 cut(s) 288, 546, 558, 813, 849, 938, 1158, 1319
SatI GCNGC 8 cut(s) 69, 72, 75, 234, 537, 701, 795, 1152
Sau96I GGNCC 2 cut(s) 603, 761
ScaI AGTACT 1 cut(s) 1296
SchI GAGTC 2 cut(s) 607, 1274
ScrFI CCNGG 2 cut(s) 768, 1107
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 4 cut(s) 69, 234, 798, 1072
Sfr274I CTCGAG 1 cut(s) 1181
SfuI TTCGAA 1 cut(s) 1172
SinI GGWCC 2 cut(s) 603, 761
SlaI CTCGAG 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 1130
SmlI CTYRAG 2 cut(s) 296, 1181
SmoI CTYRAG 2 cut(s) 296, 1181
Sse9I AATT 9 cut(s) 197, 265, 310, 1009, 1082, 1174, 1220, 1233, 1342
SsiI CCGC 5 cut(s) 33, 53, 75, 703, 1048
SspMI CTAG 6 cut(s) 12, 26, 83, 273, 617, 905
StyD4I CCNGG 2 cut(s) 766, 1105
StyI CCWWGG 1 cut(s) 1300
TaaI ACNGT 4 cut(s) 325, 519, 580, 988
TaiI ACGT 3 cut(s) 334, 635, 1114
TaqI TCGA 8 cut(s) 88, 399, 691, 819, 933, 1172, 1182, 1206
TaqII GACCGA 1 cut(s) 936
TasI AATT 9 cut(s) 197, 265, 310, 1009, 1082, 1174, 1220, 1233, 1342
TatI WGTACW 1 cut(s) 1294
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 7 cut(s) 17, 153, 279, 506, 584, 693, 1186
Tru1I TTAA 8 cut(s) 288, 546, 558, 813, 849, 938, 1158, 1319
Tru9I TTAA 8 cut(s) 288, 546, 558, 813, 849, 938, 1158, 1319
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 3 cut(s) 610, 988, 1277
TseI GCWGC 7 cut(s) 68, 71, 233, 536, 700, 794, 1151
Tsp45I GTSAC 3 cut(s) 610, 988, 1277
TspDTI ATGAA 2 cut(s) 113, 141
TspGWI ACGGA 4 cut(s) 583, 883, 963, 1035
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 603, 761
XapI RAATTY 3 cut(s) 197, 1009, 1220
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 3 cut(s) 112, 1123, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 1181
XmiI GTMKAC 3 cut(s) 884, 950, 1017
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 6 cut(s) 12, 26, 83, 273, 617, 905
ZrmI AGTACT 1 cut(s) 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.