Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009134

Physical Location & Seq

Genomic Coordinates Reverse (-)

12877821 .. 12878988

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCTCCTCTTCTTCTTCTTCAGCTGAAGCCAACCTAGCCACGGCCAAGACCGTCCTCTCCGCCGTCGCTTCCGTGGCGGCCACGGCAATGTTAGCAAGGTCCATAGCCCAAGACTTCCTCCCCCATGAGGTCCAAGACTACTTCTTCTCCGGCATCAGAAGCTTCTTCACTCGCTTCTCTAACCAACTCACCATGGTCATCGACGAGTTCGATGGTCTCGTCGGCAACCAGATTTACGAGTCTGCAGAGATCTACTTGGGTTCCAGAGTCTCTCCGTCGACGCACAGACTCAAAGTCAGCAAGCCCGAGAAGGAGAAGAGCTTCACTCTCACTATGGAGAGCAATGAAGAGATTGTGGACTTCTTCAAAGGGGTCAAGTTCAACTGGGTCTTGGTCTGCAGGCAGGTTGAAAGCAACAACTTCTACAACCCTCGTGACCTGAATTCGTCTCTGAGGTCACAAGTAAGGTGCTTTGAGCTCAGGTTCCACAAGAAGTACTTGGACTTGGTTCTGAACTCTTACCTCCACCCCATTTTGAAAGAGGCCAAATCCATGAAGCAAGAAAAGAAGACAATCAAAATCTTCACCATGGATCATAACAATCTCTACTGCAATTTGGCGGATGCTTGGACTCCGACGAATCTCGATCACCCTGCAACCTTTGAGACCTTAGCTCTGGACTCGGAGATCAAGAATTTCATTCTTCGAGATCTTGACAGGTTCATCAAGAGGAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032870 GO:0033108 GO:0033554 GO:0034050 GO:0034551 GO:0034622 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

7.72

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	41 - 134	9.9e-30	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50940
fragaria_vesca	FvH4_1g12742
malus_domestica	MD02G1142300.v1.1
prunus_persica	Prupe.7G158900_v2.0.a1 Prupe.7G158900_v2.0.a1
pyrus_communis	pycom02g11210
rosa_chinensis	RchiOBHm_Chr2g0100831 RchiOBHm_Chr2g0100841
rosa_laevigata	RLG00000017015 RLG00000017017
rosa_multiflora	Rmu_sc0001659.1_g000022 Rmu_sc0001659.1_g000024
rosa_roxburghii	Rroxscaffold_2G00141810 Rroxscaffold_2G00141820
rosa_rugosa	Rorug02G0093200 Rorug02G0093300
rosa_samantha	Rh2BG143600 Rh2BG145700 Rh2CG146900 Rh2DG146200 Rh2DG146300
rosa_wichuraiana	Rw2G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	3 cut(s)	63, 80, 623
AclWI	GGATC	1 cut(s)	603
AcoI	YGGCCR	2 cut(s)	45, 81
AcsI	RAATTY	2 cut(s)	445, 697
AcuI	CTGAAG	2 cut(s)	6, 48
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	43, 130
AgsI	TTSAA	4 cut(s)	370, 385, 413, 541
AhdI	GACNNNNNGTC	1 cut(s)	296
AluBI	AGCT	5 cut(s)	26, 165, 324, 481, 677
AluI	AGCT	5 cut(s)	26, 165, 324, 481, 677
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	4 cut(s)	224, 277, 456, 662
AlwI	GGATC	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	4 cut(s)	3, 45, 81, 546
ApoI	RAATTY	2 cut(s)	445, 697
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	102, 133
AsuHPI	GGTGA	3 cut(s)	184, 580, 644
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	102, 133
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	483
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	3 cut(s)	50, 60, 102
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BcoDI	GTCTC	4 cut(s)	224, 277, 456, 662
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	246, 400
BfuAI	ACCTGC	1 cut(s)	397
BglII	AGATCT	2 cut(s)	252, 712
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	500
Bme18I	GGWCC	2 cut(s)	102, 133
BmeRI	GACNNNNNGTC	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	102, 133
BmiI	GGNNCC	2 cut(s)	265, 488
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	2 cut(s)	165, 616
BmuI	ACTGGG	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
Bpu10I	CCTNAGC	2 cut(s)	482, 673
BsaI	GGTCTC	2 cut(s)	224, 662
BsaJI	CCNNGG	5 cut(s)	42, 75, 84, 195, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 130
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	96, 352
BseDI	CCNNGG	5 cut(s)	42, 75, 84, 195, 591
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	43, 130
BseMI	GCAATG	2 cut(s)	96, 352
BseMII	CTCAG	2 cut(s)	446, 496
BseNI	ACTGG	1 cut(s)	392
BshFI	GGCC	4 cut(s)	5, 47, 83, 548
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	43, 130
BsmAI	GTCTC	4 cut(s)	224, 277, 456, 662
BsmBI	CGTCTC	1 cut(s)	456
BsnI	GGCC	4 cut(s)	5, 47, 83, 548
Bso31I	GGTCTC	2 cut(s)	224, 662
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	252, 595, 649, 690, 712
Bsp19I	CCATGG	2 cut(s)	195, 591
BspACI	CCGC	3 cut(s)	63, 80, 623
BspANI	GGCC	4 cut(s)	5, 47, 83, 548
BspCNI	CTCAG	2 cut(s)	447, 495
BspLI	GGNNCC	2 cut(s)	265, 488
BspMAI	CTGCAG	2 cut(s)	250, 404
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	603
BspQI	GCTCTTC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	224, 662
BsrDI	GCAATG	2 cut(s)	96, 352
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	5 cut(s)	42, 75, 84, 195, 591
BssMI	GATC	5 cut(s)	252, 595, 649, 690, 712
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	195, 591
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	3 cut(s)	16, 314, 345
BstC8I	GCNNGC	2 cut(s)	305, 404
BstDEI	CTNAG	3 cut(s)	455, 482, 673
BstDSI	CCRYGG	5 cut(s)	42, 75, 84, 195, 591
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	5 cut(s)	255, 598, 652, 693, 715
BstMAI	GTCTC	4 cut(s)	224, 277, 456, 662
BstMBI	GATC	5 cut(s)	252, 595, 649, 690, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 77, 86, 95, 162
BstSFI	CTRYAG	2 cut(s)	246, 400
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	252, 712
BstYI	RGATCY	2 cut(s)	252, 712
BsuRI	GGCC	4 cut(s)	5, 47, 83, 548
BtgI	CCRYGG	5 cut(s)	42, 75, 84, 195, 591
BtsCI	GGATG	1 cut(s)	631
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	305, 404
Cfr13I	GGNCC	2 cut(s)	102, 133
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	128, 196, 556, 592
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	455, 482, 673
DpnI	GATC	5 cut(s)	254, 597, 651, 692, 714
DpnII	GATC	5 cut(s)	252, 595, 649, 690, 712
DriI	GACNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	45, 81
Eam1104I	CTCTTC	3 cut(s)	16, 314, 345
Eam1105I	GACNNNNNGTC	1 cut(s)	296
EarI	CTCTTC	3 cut(s)	16, 314, 345
EciI	GGCGGA	2 cut(s)	52, 638
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	2 cut(s)	195, 591
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	2 cut(s)	224, 662
Eco47I	GGWCC	2 cut(s)	102, 133
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	6, 48
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	195, 591
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	2 cut(s)	195, 591
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	4 cut(s)	131, 199, 559, 595
FaiI	YATR	7 cut(s)	107, 129, 197, 338, 557, 593, 600
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	4 cut(s)	127, 195, 555, 591
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	5, 47, 83, 548
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	131, 199, 559, 595
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	6 cut(s)	242, 270, 291, 634, 643, 683
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	184, 580, 644
Hpy166II	GTNNAC	2 cut(s)	282, 361
Hpy188I	TCNGA	5 cut(s)	161, 456, 516, 639, 688
Hpy188III	TCNNGA	8 cut(s)	267, 437, 647, 680, 694, 710, 716, 730
Hpy8I	GTNNAC	2 cut(s)	282, 361
Hpy99I	CGWCG	6 cut(s)	71, 209, 227, 283, 286, 643
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	248, 402, 615, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 77, 86, 95, 162
HpyF3I	CTNAG	3 cut(s)	455, 482, 673
Hsp92II	CATG	4 cut(s)	131, 199, 559, 595
Kzo9I	GATC	5 cut(s)	252, 595, 649, 690, 712
LguI	GCTCTTC	1 cut(s)	314
LweI	GCATC	2 cut(s)	165, 616
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	437, 459
MalI	GATC	5 cut(s)	254, 597, 651, 692, 714
MboI	GATC	5 cut(s)	252, 595, 649, 690, 712
MflI	RGATCY	2 cut(s)	252, 712
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	3 cut(s)	445, 616, 697
MlyI	GAGTC	5 cut(s)	251, 279, 285, 628, 677
MmeI	TCCRAC	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	5 cut(s)	38, 77, 86, 95, 162
NcoI	CCATGG	2 cut(s)	195, 591
NdeII	GATC	5 cut(s)	252, 595, 649, 690, 712
NlaIII	CATG	4 cut(s)	131, 199, 559, 595
NlaIV	GGNNCC	2 cut(s)	265, 488
NmuCI	GTSAC	2 cut(s)	437, 459
PciSI	GCTCTTC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 219
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	5 cut(s)	250, 278, 285, 628, 677
PpsI	GAGTC	5 cut(s)	250, 278, 285, 628, 677
Psp124BI	GAGCTC	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	265, 488
PspPI	GGNCC	2 cut(s)	102, 133
PstI	CTGCAG	2 cut(s)	250, 404
PsuI	RGATCY	2 cut(s)	252, 712
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	314
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	5 cut(s)	252, 595, 649, 690, 712
Sau96I	GGNCC	2 cut(s)	102, 133
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	5 cut(s)	251, 279, 285, 628, 677
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	165, 616
SfcI	CTRYAG	2 cut(s)	246, 400
SgrDI	CGTCGACG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	102, 133
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	445, 616, 697
SsiI	CCGC	3 cut(s)	63, 80, 623
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	195, 591
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	5 cut(s)	204, 213, 281, 648, 709
TasI	AATT	3 cut(s)	445, 616, 697
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	437, 459
Tsp45I	GTSAC	2 cut(s)	437, 459
TspDTI	ATGAA	4 cut(s)	363, 572, 691, 715
TspGWI	ACGGA	2 cut(s)	64, 267
VpaK11BI	GGWCC	2 cut(s)	102, 133
XapI	RAATTY	2 cut(s)	445, 697
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.