Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009134

Physical Location & Seq

Genomic Coordinates Forward (+)

12401751 .. 12402485

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG143600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTAGCAAGGTCCATAGCCCAAGACTTCCTCCCCCGTGAGATCCAAGACTACTTCTTCTCCAGCATCAGAAGCTTCTTCACTCGCTTCTCTAACCAACTCACCATGGTCATCGACGAGTTCGATGGTCTCGTCGGCAACCAGATTTACGAGTCTGCGGAGGTCTACTTGGGCTCCAGAGTCTCTCCATCGACGCACAGGCTCAAAGTCAGCAAGCCCGAGAAGGAGAAGAGCTTCACTCTCACTATGGAGAGCAATGACTTCTTCGGTCAAGTTCAACTGGGTCTTGGTCTGCAGGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032870 GO:0033108 GO:0033554 GO:0034050 GO:0034551 GO:0034622 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

101

Amino Acids

11.5

Weight (kDa)

5.28

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	11 - 87	3.1e-21	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50940
fragaria_vesca	FvH4_1g12742
malus_domestica	MD02G1142300.v1.1
prunus_persica	Prupe.7G158900_v2.0.a1 Prupe.7G158900_v2.0.a1
pyrus_communis	pycom02g11210
rosa_chinensis	RchiOBHm_Chr2g0100831 RchiOBHm_Chr2g0100841
rosa_laevigata	RLG00000017015 RLG00000017017
rosa_multiflora	Rmu_sc0001659.1_g000022 Rmu_sc0001659.1_g000024
rosa_roxburghii	Rroxscaffold_2G00141810 Rroxscaffold_2G00141820
rosa_rugosa	Rorug02G0093200 Rorug02G0093300
rosa_samantha	Rh2BG143600 Rh2BG145700 Rh2CG146900 Rh2DG146200 Rh2DG146300
rosa_wichuraiana	Rw2G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	2 cut(s)	75, 234
AluI	AGCT	2 cut(s)	75, 234
Alw26I	GTCTC	2 cut(s)	134, 187
AlwI	GGATC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	176
BccI	CCATC	2 cut(s)	119, 196
BcoDI	GTCTC	2 cut(s)	134, 187
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	2 cut(s)	46, 160
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 158, 188
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	134, 187
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	290
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	37
BspQI	GCTCTTC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	6, 215, 297
BstDSI	CCRYGG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	134, 187
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	6, 215, 297
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	202
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	6 cut(s)	20, 75, 174, 202, 217, 234
CviKI_1	RGCY	6 cut(s)	20, 75, 174, 202, 217, 234
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	17, 107, 248
FatI	CATG	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	5
GsuI	CTGGAG	2 cut(s)	46, 160
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	152, 180
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	119, 137, 196
HpyAV	CCTTC	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	42
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	76, 155, 184, 190, 266, 281, 285
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	5
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	49, 70, 241, 256
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	161, 189
MnlI	CCTC	2 cut(s)	41, 154
MroXI	GAANNNNTTC	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	42
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 129
PdmI	GAANNNNTTC	1 cut(s)	233
PleI	GAGTC	2 cut(s)	160, 188
PpsI	GAGTC	2 cut(s)	160, 188
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	161, 189
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	5 cut(s)	14, 77, 165, 236, 304
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	12
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	3 cut(s)	114, 123, 191
TaqII	GACCGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.