pycom02g11210

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
7926321 .. 7929836
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11210.3

Sequence Viewer

Length: 1530 bp
ATGGCTTCGTCTTCTTCTTCAGCTGAAACCAAACTGGCAACAGCCAAGACAATTCTATCAACGGCAGCCTCTCTGGCTGCCACGGCAATGGTAGTAAGGTCAATCGCTCAAGATTTTCTCCCCCCTGAAATCCAACACTACTTCTTCTCTGGCATCCGAAGCTTCTTTAGTCGATTTTCGTCACAACTCACCATGGTCATAGAAGAGTTCGATGGCCTTGTCAACAACCAGATATATGAGGCAGCAGAAATCTACTTGGGTGGCAAAGTCTCCCCGTCGACAAGAAGACTCAAAGTCAGCAAGCCCGAGAAAGAAAACAACTTCACCGTCGCCATGGAAAGCAATCAAGATATTGTGGACGTCTTTGGTGGAGTTAAATTCACTTGGGTATTGGTATCCAGGCAAGTTGAATCCCAGAACTTCCATAACCCTAGAGACCTCAACTCAACTTTGAGGTCAGAAGTGAGATCCTTTGAGCTGAGCTTCCACAAGAAACAAAGAGACTTGGTGCTAAACTCTTACCTCCCACACATTGTCAAAGAATCAAAGTCCATGAAGCAAGAAACGAAAACCCTAAAAATCTTTACACTTCAATCTGAGCACATGTACTGCTACAACCTAGGCGACGCATGGACTTCCGCAAATCTCGATCACCCGGCAACCTTTGACACGCTGGCATTGGACTCAGAGATCAAGAACTTCATTCTTCAAGATCTTGAACGGTTCACAAGGAGGAAGGATTATTACAGAAAAGTTGGGAAGGCTTGGAAGAGAGGTTACTTGTTGTATGGTCCACCGGGGACCGGGAAATCTAGCTTGATTGCTGCAATGGCTAATTACTTGAACTTTGATATCTATGACTTGGAGCTCACTGCTTTGAGGTCCAACTCGGAGCTTAGGAGGTTGCTGATTTCAATGGCTAATAGGTCGATATTGGTGGTGGAGGATATTGATTGTACCATTGAGTTGCAAGATCGAAAGGCTGAGGATAGACTCAATACAGCTTCAGACCCATATGGGTCCCATGAGAAACAGGTGACACTATCAGGATTGCTCAATTTTATCGATGGCCTTTGGTCGAGTTGTGGCGATGAGAGAATTATCGTGTTCACAACTAATCACAAGAACAAGCTCGACCCTGCACTGGTGCGCCCTGGTCGCATGGACGTTCATGTTCACATGTCCTACTGTACCCCATCTGGTTTTAGGCTTCTAGCTTCTAATTACCTTGGAATTAAGGAGCACATTTTGTTTAGTGAGATTGAAGAACAAATTGAAGCCGTTCAAGTAACTCCGGCGGAAGTGGCTGAGCAGCTGATAAAGAGCGATGAGCCTGATGTTGCACTGCAAGGCCTGATTGAATTTTTCAAGGTGAAGAAAAAGGAAAATGAGGAAGTTGATGAGGCTAACAGGAAACAAGAACTAGAGGCTAATGAAAAGGAAAGCAGGGTTTCTCAGGAAGCTAAGAGTGAGATGAAGGGCAAGAAAGCAGATAATGATGAAGATATTAACGAGAAAGTAGATGATTAA

Protein Analysis

510

Amino Acids

57.79

Weight (kDa)

5.57

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
AccI GTMKAC 1 cut(s) 278
AciI CCGC 2 cut(s) 639, 1298
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 2 cut(s) 377, 1361
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 3 cut(s) 608, 958, 1192
AfiI CCNNNNNNNGG 2 cut(s) 803, 1144
AflIII ACRYGT 2 cut(s) 603, 1179
AhdI GACNNNNNGTC 1 cut(s) 293
AjnI CCWGG 2 cut(s) 398, 1153
Alw21I GWGCWC 3 cut(s) 603, 870, 1245
Alw26I GTCTC 3 cut(s) 274, 429, 495
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 3 cut(s) 214, 1069, 1351
ApeKI GCWGC 5 cut(s) 65, 77, 242, 824, 1312
ApoI RAATTY 2 cut(s) 377, 1361
Asp700I GAANNNNTTC 1 cut(s) 1281
AspA2I CCTAGG 1 cut(s) 619
AspLEI GCGC 1 cut(s) 1152
AspS9I GGNCC 4 cut(s) 791, 801, 882, 1020
AsuC2I CCSGG 3 cut(s) 656, 798, 805
AsuHPI GGTGA 5 cut(s) 181, 316, 644, 1048, 1384
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 4 cut(s) 791, 801, 882, 1020
AvrII CCTAGG 1 cut(s) 619
BanII GRGCYC 1 cut(s) 870
BarI GAAGNNNNNNTAC 4 cut(s) 728, 760, 761, 793
BbsI GAAGAC 2 cut(s) 3, 292
Bbv12I GWGCWC 3 cut(s) 603, 870, 1245
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 5 cut(s) 64, 77, 254, 811, 1324
BccI CCATC 3 cut(s) 206, 1061, 1204
BceAI ACGGC 3 cut(s) 78, 99, 1265
BciT130I CCWGG 2 cut(s) 400, 1155
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 3 cut(s) 656, 798, 805
BcoDI GTCTC 3 cut(s) 274, 429, 495
BfaI CTAG 5 cut(s) 432, 620, 813, 1214, 1424
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 712
BisI GCNGC 5 cut(s) 66, 78, 243, 825, 1313
BlnI CCTAGG 1 cut(s) 619
BlpI GCTNAGC 2 cut(s) 479, 1308
BlsI GCNGC 5 cut(s) 67, 79, 244, 826, 1314
Bme1390I CCNGG 5 cut(s) 400, 656, 798, 805, 1155
Bme18I GGWCC 4 cut(s) 791, 801, 882, 1020
BmeRI GACNNNNNGTC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 791, 801, 882, 1020
BmiI GGNNCC 3 cut(s) 802, 1021, 1022
BmrFI CCNGG 5 cut(s) 400, 656, 798, 805, 1155
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 2 cut(s) 3, 292
Bpu10I CCTNAGC 2 cut(s) 896, 984
Bpu1102I GCTNAGC 2 cut(s) 479, 1308
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 3 cut(s) 656, 798, 805
Bsa29I ATCGAT 1 cut(s) 1065
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 7 cut(s) 81, 192, 333, 619, 797, 1153, 1228
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 1144
Bse1I ACTGG 2 cut(s) 39, 1149
Bse3DI GCAATG 2 cut(s) 93, 834
BseBI CCWGG 2 cut(s) 400, 1155
BseCI ATCGAT 1 cut(s) 1065
BseDI CCNNGG 7 cut(s) 81, 192, 333, 619, 797, 1153, 1228
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 803, 1144
BseMI GCAATG 2 cut(s) 93, 834
BseMII CTCAG 6 cut(s) 470, 588, 699, 975, 1299, 1469
BseNI ACTGG 2 cut(s) 39, 1149
BseXI GCAGC 5 cut(s) 64, 77, 254, 811, 1324
BsgI GTGCAG 1 cut(s) 1125
BshFI GGCC 3 cut(s) 216, 1071, 1353
BshVI ATCGAT 1 cut(s) 1065
BsiHKAI GWGCWC 3 cut(s) 603, 870, 1245
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 4 cut(s) 656, 797, 804, 1295
BslFI GGGAC 2 cut(s) 814, 1006
BslI CCNNNNNNNGG 2 cut(s) 803, 1144
BsmAI GTCTC 3 cut(s) 274, 429, 495
BsmFI GGGAC 2 cut(s) 814, 1006
BsnI GGCC 3 cut(s) 216, 1071, 1353
Bso31I GGTCTC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 603, 870, 1245
Bsp143I GATC 5 cut(s) 467, 649, 690, 712, 973
Bsp1720I GCTNAGC 2 cut(s) 479, 1308
Bsp19I CCATGG 2 cut(s) 192, 333
BspACI CCGC 2 cut(s) 639, 1298
BspANI GGCC 3 cut(s) 216, 1071, 1353
BspCNI CTCAG 6 cut(s) 471, 589, 698, 976, 1300, 1468
BspDI ATCGAT 1 cut(s) 1065
BspLI GGNNCC 3 cut(s) 802, 1021, 1022
BspPI GGATC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 429
BsrDI GCAATG 2 cut(s) 93, 834
BsrI ACTGG 2 cut(s) 39, 1149
BssECI CCNNGG 7 cut(s) 81, 192, 333, 619, 797, 1153, 1228
BssMI GATC 5 cut(s) 467, 649, 690, 712, 973
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 4 cut(s) 192, 333, 619, 1228
Bst2UI CCWGG 2 cut(s) 400, 1155
Bst4CI ACNGT 3 cut(s) 328, 723, 1190
Bst6I CTCTTC 2 cut(s) 198, 764
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 302, 675
BstDEI CTNAG 8 cut(s) 479, 597, 685, 896, 984, 1308, 1455, 1464
BstDSI CCRYGG 3 cut(s) 81, 192, 333
BstF5I GGATG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 1152
BstKTI GATC 5 cut(s) 470, 652, 693, 715, 976
BstMAI GTCTC 3 cut(s) 274, 429, 495
BstMBI GATC 5 cut(s) 467, 649, 690, 712, 973
BstMWI GCNNNNNNNGC 6 cut(s) 74, 83, 159, 830, 1158, 1304
BstNI CCWGG 2 cut(s) 400, 1155
BstNSI RCATGY 2 cut(s) 607, 1183
BstSCI CCNGG 5 cut(s) 398, 654, 796, 803, 1153
BstV1I GCAGC 5 cut(s) 64, 77, 254, 811, 1324
BstV2I GAAGAC 2 cut(s) 3, 292
BstX2I RGATCY 2 cut(s) 467, 712
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 2 cut(s) 467, 712
Bsu15I ATCGAT 1 cut(s) 1065
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 3 cut(s) 216, 1071, 1353
BsuTUI ATCGAT 1 cut(s) 1065
BtgI CCRYGG 3 cut(s) 81, 192, 333
BtgZI GCGATG 2 cut(s) 1104, 1341
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 2 cut(s) 870, 1343
BtsIMutI CAGTG 3 cut(s) 870, 1142, 1343
Cac8I GCNNGC 2 cut(s) 302, 675
CfoI GCGC 1 cut(s) 1152
Cfr13I GGNCC 4 cut(s) 791, 801, 882, 1020
ClaI ATCGAT 1 cut(s) 1065
CseI GACGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 607, 957, 1191
CviAII CATG 9 cut(s) 193, 334, 553, 604, 630, 1025, 1162, 1172, 1180
CviQI GTAC 3 cut(s) 607, 957, 1191
DdeI CTNAG 8 cut(s) 479, 597, 685, 896, 984, 1308, 1455, 1464
DpnI GATC 5 cut(s) 469, 651, 692, 714, 975
DpnII GATC 5 cut(s) 467, 649, 690, 712, 973
DriI GACNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 198, 764
Eam1105I GACNNNNNGTC 1 cut(s) 293
EarI CTCTTC 2 cut(s) 198, 764
EciI GGCGGA 1 cut(s) 1313
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 4 cut(s) 192, 333, 619, 1228
Eco147I AGGCCT 1 cut(s) 1353
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 429
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 4 cut(s) 791, 801, 882, 1020
Eco53kI GAGCTC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRII CCWGG 2 cut(s) 398, 1153
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 4 cut(s) 192, 333, 619, 1228
EcoT38I GRGCYC 1 cut(s) 870
ErhI CCWWGG 4 cut(s) 192, 333, 619, 1228
FaeI CATG 9 cut(s) 196, 337, 556, 607, 633, 1028, 1165, 1175, 1183
FaqI GGGAC 2 cut(s) 814, 1006
FatI CATG 9 cut(s) 192, 333, 552, 603, 629, 1024, 1161, 1171, 1179
FauNDI CATATG 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 5 cut(s) 66, 78, 243, 825, 1313
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 66, 78, 243, 825, 1313
FspBI CTAG 5 cut(s) 432, 620, 813, 1214, 1424
GlaI GCGC 1 cut(s) 1151
GluI GCNGC 5 cut(s) 66, 78, 243, 825, 1313
HaeIII GGCC 3 cut(s) 216, 1071, 1353
HapII CCGG 4 cut(s) 656, 797, 804, 1295
HgaI GACGC 1 cut(s) 635
HhaI GCGC 1 cut(s) 1152
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 9 cut(s) 196, 337, 556, 607, 633, 1028, 1165, 1175, 1183
Hin6I GCGC 1 cut(s) 1150
HinP1I GCGC 1 cut(s) 1150
HincII GTYRAC 2 cut(s) 223, 279
HindII GTYRAC 2 cut(s) 223, 279
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 5 cut(s) 288, 410, 542, 683, 993
HpaII CCGG 4 cut(s) 656, 797, 804, 1295
HphI GGTGA 5 cut(s) 181, 316, 644, 1048, 1384
Hpy166II GTNNAC 7 cut(s) 223, 279, 358, 726, 794, 1110, 1177
Hpy188I TCNGA 6 cut(s) 158, 460, 598, 688, 892, 1009
Hpy188III TCNNGA 8 cut(s) 110, 347, 647, 694, 710, 716, 1047, 1457
Hpy8I GTNNAC 7 cut(s) 223, 279, 358, 726, 794, 1110, 1177
Hpy99I CGWCG 3 cut(s) 280, 332, 629
HpyAV CCTTC 3 cut(s) 730, 754, 1471
HpyCH4III ACNGT 3 cut(s) 328, 723, 1190
HpyCH4IV ACGT 2 cut(s) 360, 1167
HpyCH4V TGCA 5 cut(s) 827, 970, 1142, 1343, 1348
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 83, 159, 830, 1158, 1304
HpyF3I CTNAG 8 cut(s) 479, 597, 685, 896, 984, 1308, 1455, 1464
HpySE526I ACGT 2 cut(s) 360, 1167
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 9 cut(s) 196, 337, 556, 607, 633, 1028, 1165, 1175, 1183
HspAI GCGC 1 cut(s) 1150
KflI GGGWCCC 1 cut(s) 1020
Kzo9I GATC 5 cut(s) 467, 649, 690, 712, 973
LmnI GCTCC 3 cut(s) 865, 892, 1240
Lsp1109I GCAGC 5 cut(s) 64, 77, 254, 811, 1324
LweI GCATC 1 cut(s) 162
MaeI CTAG 5 cut(s) 432, 620, 813, 1214, 1424
MaeII ACGT 2 cut(s) 360, 1167
MaeIII GTNAC 4 cut(s) 180, 776, 1036, 1288
MalI GATC 5 cut(s) 469, 651, 692, 714, 975
MboI GATC 5 cut(s) 467, 649, 690, 712, 973
MflI RGATCY 2 cut(s) 467, 712
MhlI GDGCHC 3 cut(s) 603, 870, 1245
MluCI AATT 9 cut(s) 51, 377, 835, 1057, 1098, 1222, 1233, 1272, 1361
MlyI GAGTC 3 cut(s) 282, 677, 987
MmeI TCCRAC 2 cut(s) 157, 909
MroXI GAANNNNTTC 1 cut(s) 1281
MseI TTAA 4 cut(s) 375, 1236, 1509, 1528
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 2 cut(s) 23, 1315
MspI CCGG 4 cut(s) 656, 797, 804, 1295
MspR9I CCNGG 5 cut(s) 400, 656, 798, 805, 1155
MvaI CCWGG 2 cut(s) 400, 1155
MwoI GCNNNNNNNGC 6 cut(s) 74, 83, 159, 830, 1158, 1304
NciI CCSGG 3 cut(s) 656, 798, 805
NcoI CCATGG 2 cut(s) 192, 333
NdeI CATATG 1 cut(s) 1015
NdeII GATC 5 cut(s) 467, 649, 690, 712, 973
NlaIII CATG 9 cut(s) 196, 337, 556, 607, 633, 1028, 1165, 1175, 1183
NlaIV GGNNCC 3 cut(s) 802, 1021, 1022
NmuCI GTSAC 2 cut(s) 180, 1036
NspI RCATGY 2 cut(s) 607, 1183
PceI AGGCCT 1 cut(s) 1353
PciI ACATGT 2 cut(s) 603, 1179
PdmI GAANNNNTTC 1 cut(s) 1281
PfeI GAWTC 2 cut(s) 410, 542
PkrI GCNGC 5 cut(s) 67, 79, 244, 826, 1314
PleI GAGTC 3 cut(s) 282, 677, 987
PpsI GAGTC 3 cut(s) 282, 677, 987
PpuMI RGGWCCY 1 cut(s) 1020
PscI ACATGT 2 cut(s) 603, 1179
Psp124BI GAGCTC 1 cut(s) 870
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 2 cut(s) 398, 1153
PspGI CCWGG 2 cut(s) 398, 1153
PspN4I GGNNCC 3 cut(s) 802, 1021, 1022
PspPI GGNCC 4 cut(s) 791, 801, 882, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PsuI RGATCY 2 cut(s) 467, 712
PvuII CAGCTG 2 cut(s) 23, 1315
RsaI GTAC 3 cut(s) 608, 958, 1192
RsaNI GTAC 3 cut(s) 607, 957, 1191
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 870
SalI GTCGAC 1 cut(s) 277
SaqAI TTAA 4 cut(s) 375, 1236, 1509, 1528
SatI GCNGC 5 cut(s) 66, 78, 243, 825, 1313
Sau3AI GATC 5 cut(s) 467, 649, 690, 712, 973
Sau96I GGNCC 4 cut(s) 791, 801, 882, 1020
SchI GAGTC 3 cut(s) 282, 677, 987
ScrFI CCNGG 5 cut(s) 400, 656, 798, 805, 1155
SduI GDGCHC 3 cut(s) 603, 870, 1245
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 4 cut(s) 791, 801, 882, 1020
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 9 cut(s) 51, 377, 835, 1057, 1098, 1222, 1233, 1272, 1361
SseBI AGGCCT 1 cut(s) 1353
SsiI CCGC 2 cut(s) 639, 1298
SspMI CTAG 5 cut(s) 432, 620, 813, 1214, 1424
SstI GAGCTC 1 cut(s) 870
StuI AGGCCT 1 cut(s) 1353
StyD4I CCNGG 5 cut(s) 398, 654, 796, 803, 1153
StyI CCWWGG 4 cut(s) 192, 333, 619, 1228
TaaI ACNGT 3 cut(s) 328, 723, 1190
TaiI ACGT 2 cut(s) 363, 1170
TaqI TCGA 9 cut(s) 172, 210, 278, 648, 929, 976, 1065, 1079, 1134
TasI AATT 9 cut(s) 51, 377, 835, 1057, 1098, 1222, 1233, 1272, 1361
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 2 cut(s) 410, 542
Tru1I TTAA 4 cut(s) 375, 1236, 1509, 1528
Tru9I TTAA 4 cut(s) 375, 1236, 1509, 1528
TscAI CASTG 3 cut(s) 877, 1149, 1350
TseFI GTSAC 2 cut(s) 180, 1036
TseI GCWGC 5 cut(s) 65, 77, 242, 824, 1312
Tsp45I GTSAC 2 cut(s) 180, 1036
TspDTI ATGAA 6 cut(s) 569, 691, 1160, 1449, 1490, 1515
TspRI CASTG 3 cut(s) 877, 1149, 1350
VpaK11BI GGWCC 4 cut(s) 791, 801, 882, 1020
XapI RAATTY 2 cut(s) 377, 1361
XceI RCATGY 2 cut(s) 607, 1183
XmaJI CCTAGG 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 1281
XspI CTAG 5 cut(s) 432, 620, 813, 1214, 1424
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.