Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009134

Physical Location & Seq

Genomic Coordinates Reverse (-)

7653250 .. 7653735

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAATGTCACTGAAAAGCATGACAACATCCTTGTGAAGAACTATAATTCGAGATCCATGGAAACAGAGCATATTCCGGAATCCAATTATAGTCGCGCCTCTAAAAGAGGGCGCCAAGAGCGAAACCCTAATCTTAGGGATACTTCTGAACGTTCTGGTCCATATAATCGCTCTACTTGGGAAGGTAACCGCCAAAATAGGCGAACACGGAACCGAAGAGGTAAACGTGGAAAGAGAGAGGGAGGCAACGCCTCTGGCCATGTTGGTGGCGCCACCAACACTAAGAGCCATCTAAATGACGCTTTCAAAGCGCCTCAATCAATGGAGTCTGAGCAAAGAGATGTATGTTCTCGATGTGGAGTATCCGGTCATTGGACACACATTTGTAGAGCTCGTGAAAAAATTGTCACCGCCTACAAAGCATATTGTGAAGCAAGAGAAGCTCACTATGTGGAACAAGAAGATCAAGAAAATGATCTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032870 GO:0033108 GO:0033554 GO:0034050 GO:0034551 GO:0034622 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

161

Amino Acids

18.59

Weight (kDa)

9.41

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50940
fragaria_vesca	FvH4_1g12742
malus_domestica	MD02G1142300.v1.1
prunus_persica	Prupe.7G158900_v2.0.a1 Prupe.7G158900_v2.0.a1
pyrus_communis	pycom02g11210
rosa_chinensis	RchiOBHm_Chr2g0100831 RchiOBHm_Chr2g0100841
rosa_laevigata	RLG00000017015 RLG00000017017
rosa_multiflora	Rmu_sc0001659.1_g000022 Rmu_sc0001659.1_g000024
rosa_roxburghii	Rroxscaffold_2G00141810 Rroxscaffold_2G00141820
rosa_rugosa	Rorug02G0093200 Rorug02G0093300
rosa_samantha	Rh2BG143600 Rh2BG145700 Rh2CG146900 Rh2DG146200 Rh2DG146300
rosa_wichuraiana	Rw2G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	111, 269
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	2 cut(s)	190, 411
AclI	AACGTT	1 cut(s)	151
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	2 cut(s)	112, 270
AdeI	CACNNNGTG	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	392, 443
AluI	AGCT	2 cut(s)	392, 443
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	1 cut(s)	256
AspLEI	GCGC	4 cut(s)	98, 114, 272, 313
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	258
BanI	GGYRCC	2 cut(s)	111, 269
BanII	GRGCYC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	1 cut(s)	297
BciVI	GTATCC	2 cut(s)	133, 373
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	3 cut(s)	115, 273, 314
BfuI	GTATCC	2 cut(s)	133, 373
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	113, 212, 271
BsaHI	GRCGYC	2 cut(s)	112, 270
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	2 cut(s)	76, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	2 cut(s)	111, 269
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	77, 366
BslI	CCNNNNNNNGG	1 cut(s)	372
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	53, 463, 475
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	190, 411
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	113, 212, 271
BspPI	GGATC	1 cut(s)	48
BspT107I	GGYRCC	2 cut(s)	111, 269
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	53, 463, 475
BssNI	GRCGYC	2 cut(s)	112, 270
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	2 cut(s)	112, 270
BstDEI	CTNAG	3 cut(s)	134, 282, 330
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	3 cut(s)	115, 273, 314
BstHHI	GCGC	4 cut(s)	98, 114, 272, 313
BstKTI	GATC	3 cut(s)	56, 466, 478
BstMBI	GATC	3 cut(s)	53, 463, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 308, 419, 440
BstPI	GGTNACC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	2 cut(s)	133, 373
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	9
CfoI	GCGC	4 cut(s)	98, 114, 272, 313
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	20, 58, 260
CviJI	RGCY	4 cut(s)	258, 288, 392, 443
CviKI_1	RGCY	4 cut(s)	258, 288, 392, 443
DdeI	CTNAG	3 cut(s)	134, 282, 330
DinI	GGCGCC	2 cut(s)	113, 271
DpnI	GATC	3 cut(s)	55, 465, 477
DpnII	GATC	3 cut(s)	53, 463, 475
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	2 cut(s)	113, 271
EheI	GGCGCC	2 cut(s)	113, 271
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	23, 61, 263
FatI	CATG	3 cut(s)	19, 57, 259
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	4 cut(s)	97, 113, 271, 312
HaeII	RGCGCY	3 cut(s)	115, 273, 314
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	77, 366
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	4 cut(s)	98, 114, 272, 313
Hin1I	GRCGYC	2 cut(s)	112, 270
Hin1II	CATG	3 cut(s)	23, 61, 263
Hin6I	GCGC	4 cut(s)	96, 112, 270, 311
HinP1I	GCGC	4 cut(s)	96, 112, 270, 311
HinfI	GANTC	2 cut(s)	80, 326
HpaII	CCGG	2 cut(s)	77, 366
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	148, 331
Hpy188III	TCNNGA	6 cut(s)	51, 77, 351, 395, 467, 479
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	151, 226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 308, 419, 440
HpyF3I	CTNAG	3 cut(s)	134, 282, 330
HpySE526I	ACGT	2 cut(s)	151, 226
Hsp92I	GRCGYC	2 cut(s)	112, 270
Hsp92II	CATG	3 cut(s)	23, 61, 263
HspAI	GCGC	4 cut(s)	96, 112, 270, 311
KasI	GGCGCC	2 cut(s)	111, 269
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	53, 463, 475
LpnPI	CCDG	4 cut(s)	90, 141, 240, 379
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	151, 226
MaeIII	GTNAC	3 cut(s)	7, 185, 406
MalI	GATC	3 cut(s)	55, 465, 477
MboI	GATC	3 cut(s)	53, 463, 475
MboII	GAAGA	3 cut(s)	49, 228, 473
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	46, 85, 402
MluNI	TGGCCA	1 cut(s)	258
Mly113I	GGCGCC	2 cut(s)	112, 270
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	7 cut(s)	101, 109, 212, 232, 236, 262, 324
Mox20I	TGGCCA	1 cut(s)	258
MroI	TCCGGA	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	258
MslI	CAYNNNNRTG	3 cut(s)	32, 264, 294
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	77, 366
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	118, 308, 419, 440
NarI	GGCGCC	2 cut(s)	112, 270
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	53, 463, 475
NlaIII	CATG	3 cut(s)	23, 61, 263
NlaIV	GGNNCC	3 cut(s)	113, 212, 271
NmuCI	GTSAC	2 cut(s)	7, 406
PfeI	GAWTC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	334
PluTI	GGCGCC	2 cut(s)	115, 273
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	113, 212, 271
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	53
RseI	CAYNNNNRTG	3 cut(s)	32, 264, 294
SacI	GAGCTC	1 cut(s)	394
Sau3AI	GATC	3 cut(s)	53, 463, 475
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	6 cut(s)	154, 187, 223, 229, 394, 445
SfoI	GGCGCC	2 cut(s)	113, 271
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	3 cut(s)	32, 264, 294
Sse9I	AATT	3 cut(s)	46, 85, 402
SsiI	CCGC	2 cut(s)	190, 411
SspDI	GGCGCC	2 cut(s)	111, 269
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	2 cut(s)	154, 229
TaqI	TCGA	2 cut(s)	50, 352
TasI	AATT	3 cut(s)	46, 85, 402
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	7, 406
Tsp45I	GTSAC	2 cut(s)	7, 406
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	158
XbaI	TCTAGA	1 cut(s)	478
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.