AT3G51240

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010899
Physical Location & Seq
Forward (+)
19025192 .. 19026872
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51240.1

Sequence Viewer

Length: 1077 bp
ATGGCTCCAGGAACTTTGACTGAGCTAGCCGGAGAGTCTAAGCTCAACTCTAAATTTGTCAGGGACGAAGATGAACGGCCCAAAGTCGCTTACAATGTGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGACGTCGATGGAAAAAGAGGAGAGATCTGCCGTCAGATCGTTGAGGCTTGTGAGAATTGGGGCATCTTCCAAGTGGTCGATCACGGCGTCGATACTAACTTAGTGGCGGATATGACTCGTCTCGCTCGTGACTTCTTTGCTTTACCTCCGGAAGACAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGGATTCATCGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATTGTAACGTATTTCTCGTACCCGGTGAGAAACAGAGACTACTCACGGTGGCCAGATAAGCCGGAAGGTTGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCTTGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGATATGGACCAAAAGATTGTTGTTAATTATTACCCAAAATGCCCTCAGCCTGATCTCACCCTCGGACTCAAGCGTCACACTGACCCTGGAACCATTACCTTGCTGCTACAAGACCAAGTCGGTGGATTACAAGCCACACGTGACAATGGCAAGACATGGATTACGGTTCAGCCTGTTGAAGGAGCGTTTGTCGTCAATCTCGGCGACCACGGCCATTTTTTGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCAGAACCCCGCGCCGGATGCCACAGTGTATCCACTGAAAGTAAGAGAAGGAGAGAAGGCAATATTGGAGGAGCCAATCACGTTTGCCGAGATGTATAAGAGAAAGATGGGAAGAGATTTGGAGCTTGCTCGCCTCAAGAAGCTGGCTAAAGAGGAGCGTGACCACAAAGAAGTTGACAAGCCTGTCGACCAAATCTTCGCTTAG

Protein Analysis

358

Amino Acids

40.28

Weight (kDa)

5.29

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 38 - 148 9.2e-23 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 194 - 294 1.7e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51240 AT3G51240
fragaria_vesca FvH4_1g11810
malus_domestica MD02G1132200.v1.1 MD15G1246200.v1.1
prunus_persica Prupe.7G168300_v2.0.a1 Prupe.7G168300_v2.0.a1
pyrus_communis pycom02g10320 pycom15g21590
rosa_chinensis RchiOBHm_Chr2g0099421
rosa_laevigata RLG00000016880
rosa_multiflora Rmu_co8440373.1_g000001 Rmu_sc0002487.1_g000013
rosa_roxburghii Rroxscaffold_2G00143090
rosa_rugosa Rorug02G0079600
rosa_samantha Rh2AG129400 Rh2BG132300 Rh2CG133200 Rh2DG133500
rosa_wichuraiana Rw2G009960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 645, 1055
AatII GACGTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 1059
AccII CGCG 1 cut(s) 884
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 2 cut(s) 248, 882
AcoI YGGCCR 2 cut(s) 437, 784
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 549
AcvI CACGTG 1 cut(s) 713
AcyI GRCGYC 2 cut(s) 144, 228
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 364, 752, 886
AflIII ACRYGT 2 cut(s) 312, 710
AgsI TTSAA 2 cut(s) 752, 811
AjnI CCWGG 3 cut(s) 7, 357, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 7 cut(s) 25, 43, 301, 511, 533, 997, 1015
AluI AGCT 7 cut(s) 25, 43, 301, 511, 533, 997, 1015
Alw26I GTCTC 4 cut(s) 266, 349, 417, 558
Ama87I CYCGRG 1 cut(s) 847
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 4 cut(s) 77, 437, 784, 828
ApeKI GCWGC 1 cut(s) 676
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 1 cut(s) 1052
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 2 cut(s) 78, 580
AsuC2I CCSGG 2 cut(s) 116, 410
AsuHPI GGTGA 6 cut(s) 130, 344, 424, 472, 622, 847
AsuNHI GCTAGC 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 439
BauI CACGAG 1 cut(s) 267
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 1 cut(s) 663
BccI CCATC 2 cut(s) 143, 973
BceAI ACGGC 5 cut(s) 92, 156, 241, 799, 815
BciT130I CCWGG 3 cut(s) 9, 359, 660
BciVI GTATCC 1 cut(s) 912
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 2 cut(s) 116, 410
BcoDI GTCTC 4 cut(s) 266, 349, 417, 558
BfaI CTAG 2 cut(s) 26, 348
BfuI GTATCC 1 cut(s) 912
BglII AGATCT 1 cut(s) 165
BisI GCNGC 1 cut(s) 677
BlsI GCNGC 1 cut(s) 678
Bme1390I CCNGG 5 cut(s) 9, 116, 359, 410, 660
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 2 cut(s) 78, 580
BmiI GGNNCC 3 cut(s) 6, 664, 945
BmrFI CCNGG 5 cut(s) 9, 116, 359, 410, 660
BmsI GCATC 2 cut(s) 213, 880
BmtI GCTAGC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 4 cut(s) 536, 563, 626, 992
BpuMI CCSGG 2 cut(s) 116, 410
Bsa29I ATCGAT 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 713
BsaHI GRCGYC 2 cut(s) 144, 228
BsaJI CCNNGG 5 cut(s) 358, 634, 658, 781, 831
BsaWI WCCGGW 2 cut(s) 289, 317
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 747, 777
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 752, 886
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 805
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 3 cut(s) 9, 359, 660
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 5 cut(s) 358, 634, 658, 781, 831
BseGI GGATG 1 cut(s) 895
BseLI CCNNNNNNNGG 3 cut(s) 364, 752, 886
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 2 cut(s) 12, 632
BseRI GAGGAG 4 cut(s) 174, 488, 956, 1040
BseXI GCAGC 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 4 cut(s) 79, 439, 786, 830
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 8 cut(s) 30, 116, 132, 290, 318, 410, 449, 887
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 364, 752, 886
BsmAI GTCTC 4 cut(s) 266, 349, 417, 558
BsmBI CGTCTC 2 cut(s) 266, 349
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 4 cut(s) 79, 439, 786, 830
BsoBI CYCGRG 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 6 cut(s) 120, 165, 177, 220, 625, 820
BspACI CCGC 2 cut(s) 248, 882
BspANI GGCC 4 cut(s) 79, 439, 786, 830
BspCNI CTCAG 2 cut(s) 13, 631
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 289
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 3 cut(s) 6, 664, 945
BspOI GCTAGC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 5 cut(s) 358, 634, 658, 781, 831
BssMI GATC 6 cut(s) 120, 165, 177, 220, 625, 820
BssNI GRCGYC 2 cut(s) 144, 228
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 9, 359, 660
Bst4CI ACNGT 3 cut(s) 435, 739, 898
Bst6I CTCTTC 1 cut(s) 979
BstACI GRCGYC 2 cut(s) 144, 228
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 5 cut(s) 27, 568, 999, 1003, 1017
BstDEI CTNAG 5 cut(s) 21, 39, 241, 618, 1074
BstDSI CCRYGG 2 cut(s) 781, 831
BstENI CCTNNNNNAGG 1 cut(s) 750
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 1 cut(s) 884
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 6 cut(s) 123, 168, 180, 223, 628, 823
BstMAI GTCTC 4 cut(s) 266, 349, 417, 558
BstMBI GATC 6 cut(s) 120, 165, 177, 220, 625, 820
BstMWI GCNNNNNNNGC 3 cut(s) 445, 783, 890
BstNI CCWGG 3 cut(s) 9, 359, 660
BstNSI RCATGY 2 cut(s) 316, 570
BstSCI CCNGG 5 cut(s) 7, 114, 357, 408, 658
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 1 cut(s) 663
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 912
BsuRI GGCC 4 cut(s) 79, 439, 786, 830
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 2 cut(s) 781, 831
BtsCI GGATG 1 cut(s) 895
BtsIMutI CAGTG 3 cut(s) 651, 903, 905
Cac8I GCNNGC 5 cut(s) 27, 568, 999, 1003, 1017
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 78, 580
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 3 cut(s) 217, 559, 635
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 313, 567, 729
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 5 cut(s) 21, 39, 241, 618, 1074
DpnI GATC 6 cut(s) 122, 167, 179, 222, 627, 822
DpnII GATC 6 cut(s) 120, 165, 177, 220, 625, 820
DrdI GACNNNNNNGTC 2 cut(s) 645, 1055
DseDI GACNNNNNNGTC 2 cut(s) 645, 1055
EaeI YGGCCR 2 cut(s) 437, 784
Eam1104I CTCTTC 1 cut(s) 979
EarI CTCTTC 1 cut(s) 979
EciI GGCGGA 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 549
Eco72I CACGTG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 847
EcoNI CCTNNNNNAGG 1 cut(s) 750
EcoRII CCWGG 3 cut(s) 7, 357, 658
EcoT22I ATGCAT 1 cut(s) 568
Esp3I CGTCTC 2 cut(s) 266, 349
FaeI CATG 3 cut(s) 316, 570, 732
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 312, 566, 728
FauI CCCGC 1 cut(s) 889
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 1 cut(s) 677
FokI GGATG 1 cut(s) 902
Fsp4HI GCNGC 1 cut(s) 677
FspBI CTAG 2 cut(s) 26, 348
GlaI GCGC 1 cut(s) 885
GluI GCNGC 1 cut(s) 677
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 4 cut(s) 79, 439, 786, 830
HapII CCGG 8 cut(s) 30, 116, 132, 290, 318, 410, 449, 887
HgaI GACGC 3 cut(s) 217, 559, 635
HhaI GCGC 1 cut(s) 886
Hin1I GRCGYC 2 cut(s) 144, 228
Hin1II CATG 3 cut(s) 316, 570, 732
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 2 cut(s) 1048, 1060
HindII GTYRAC 2 cut(s) 1048, 1060
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 5 cut(s) 35, 256, 336, 551, 639
HpaII CCGG 8 cut(s) 30, 116, 132, 290, 318, 410, 449, 887
HphI GGTGA 6 cut(s) 130, 344, 424, 472, 622, 847
Hpy166II GTNNAC 3 cut(s) 838, 1048, 1060
Hpy188I TCNGA 3 cut(s) 177, 529, 638
Hpy188III TCNNGA 7 cut(s) 269, 290, 515, 542, 811, 874, 1009
Hpy8I GTNNAC 3 cut(s) 838, 1048, 1060
Hpy99I CGWCG 4 cut(s) 110, 149, 233, 575
HpyAV CCTTC 4 cut(s) 446, 746, 914, 922
HpyCH4III ACNGT 3 cut(s) 435, 739, 898
HpyCH4IV ACGT 5 cut(s) 144, 395, 712, 869, 953
HpyCH4V TGCA 2 cut(s) 373, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 783, 890
HpyF3I CTNAG 5 cut(s) 21, 39, 241, 618, 1074
HpySE526I ACGT 5 cut(s) 144, 395, 712, 869, 953
Hsp92I GRCGYC 2 cut(s) 144, 228
Hsp92II CATG 3 cut(s) 316, 570, 732
HspAI GCGC 1 cut(s) 884
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 6 cut(s) 120, 165, 177, 220, 625, 820
LmnI GCTCC 6 cut(s) 10, 306, 755, 943, 994, 1027
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 2 cut(s) 213, 880
MaeI CTAG 2 cut(s) 26, 348
MaeII ACGT 5 cut(s) 144, 395, 712, 869, 953
MaeIII GTNAC 7 cut(s) 269, 350, 391, 466, 647, 713, 1031
MalI GATC 6 cut(s) 122, 167, 179, 222, 627, 822
MboI GATC 6 cut(s) 120, 165, 177, 220, 625, 820
MboII GAAGA 5 cut(s) 80, 199, 305, 996, 1060
MflI RGATCY 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 3 cut(s) 53, 196, 598
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 4 cut(s) 44, 250, 560, 633
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 439
MseI TTAA 1 cut(s) 597
Msp20I TGGCCA 1 cut(s) 439
MspI CCGG 8 cut(s) 30, 116, 132, 290, 318, 410, 449, 887
MspR9I CCNGG 5 cut(s) 9, 116, 359, 410, 660
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 3 cut(s) 9, 359, 660
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 3 cut(s) 445, 783, 890
NciI CCSGG 2 cut(s) 116, 410
NdeII GATC 6 cut(s) 120, 165, 177, 220, 625, 820
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 3 cut(s) 316, 570, 732
NlaIV GGNNCC 3 cut(s) 6, 664, 945
NmeAIII GCCGAG 2 cut(s) 753, 985
NmuCI GTSAC 6 cut(s) 269, 350, 466, 647, 713, 1031
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 2 cut(s) 316, 570
PaeI GCATGC 1 cut(s) 570
PaeR7I CTCGAG 1 cut(s) 847
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 5 cut(s) 135, 144, 225, 265, 401
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 1 cut(s) 336
PflFI GACNNNGTC 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 1 cut(s) 678
PleI GAGTC 4 cut(s) 43, 250, 559, 633
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 4 cut(s) 43, 250, 559, 633
Ppu21I YACGTR 1 cut(s) 713
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 7, 357, 658
PspCI CACGTG 1 cut(s) 713
PspGI CCWGG 3 cut(s) 7, 357, 658
PspN4I GGNNCC 3 cut(s) 6, 664, 945
PspPI GGNCC 2 cut(s) 78, 580
PspXI VCTCGAGB 1 cut(s) 847
PsuI RGATCY 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SalI GTCGAC 1 cut(s) 1058
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 1 cut(s) 677
Sau3AI GATC 6 cut(s) 120, 165, 177, 220, 625, 820
Sau96I GGNCC 2 cut(s) 78, 580
SchI GAGTC 4 cut(s) 44, 250, 560, 633
ScrFI CCNGG 5 cut(s) 9, 116, 359, 410, 660
SfaNI GCATC 2 cut(s) 213, 880
Sfr274I CTCGAG 1 cut(s) 847
SinI GGWCC 1 cut(s) 580
SlaI CTCGAG 1 cut(s) 847
SmlI CTYRAG 5 cut(s) 515, 542, 641, 847, 1007
SmoI CTYRAG 5 cut(s) 515, 542, 641, 847, 1007
SphI GCATGC 1 cut(s) 570
Sse9I AATT 3 cut(s) 53, 196, 598
SsiI CCGC 2 cut(s) 248, 882
SspI AATATT 1 cut(s) 936
SspMI CTAG 2 cut(s) 26, 348
StyD4I CCNGG 5 cut(s) 7, 114, 357, 408, 658
TaaI ACNGT 3 cut(s) 435, 739, 898
TaiI ACGT 5 cut(s) 147, 398, 715, 872, 956
TaqI TCGA 8 cut(s) 138, 147, 219, 231, 309, 573, 848, 1059
TasI AATT 3 cut(s) 53, 196, 598
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 3 cut(s) 658, 903, 912
TseFI GTSAC 6 cut(s) 269, 350, 466, 647, 713, 1031
TseI GCWGC 1 cut(s) 676
Tsp45I GTSAC 6 cut(s) 269, 350, 466, 647, 713, 1031
TspDTI ATGAA 2 cut(s) 87, 328
TspGWI ACGGA 2 cut(s) 293, 485
TspRI CASTG 3 cut(s) 658, 903, 912
Tth111I GACNNNGTC 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 580
XagI CCTNNNNNAGG 1 cut(s) 750
XapI RAATTY 1 cut(s) 53
XceI RCATGY 2 cut(s) 316, 570
XhoI CTCGAG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 1059
XspI CTAG 2 cut(s) 26, 348
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.