Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

6444749 .. 6449440

Gene Structure 4692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTGCTCTCAAATTCTTATTCTTTAACTTCCCTTAGATTCCCATCGCCAAAACTCACTCTTCACCAAAATCGCAGCCCAAAACGAATCGTGAAAATGGCCCAGACTGCCCAAAACCCGGTGAAGCAGCAATTGAAAATCGTTGTACCCAACAAACATGGTGAAAAACTTGTGGGCTTATTACATGACACAGGTTCTGGGGAGATTGTAATCTTATGTCATGGTTTTCGATCCTCAAAGGAGACAACTAGTATTGCAAACATTGCTGTTGCATTGGAGAATGAAGGAATTAGCTCCTTCCGTTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTACCTTTCAGTATGGTCATTATCGTAGAGAGGCCGATGACTTGCATGCTGTAGTCCAACACTTCTATGGGGCAAATCGTGTACCAAGTGCAATCCTTGGGCACAGTAAAGGAGGTAATGTTGTGCTCCTATATGCTTCCAAGTATCATAACATTCCTACCGTTGTCAATGTTTCTGGGCGTTATGATATGAAGAGAGGCATTAAAGAACGCTTGGGAGATGACTTTATGCAAACAATCAAGAAGGAAGGATTCATTGATGTTCAGAATAAGAGAGGAAGTTATCGTGTGACTGAGGAAAGTTTGATGGATCGCCTAAGTACAGATATGCATGAAGCATGCCTTCAGATTGACAAAGATTGTCGGGTGTTAACTGCCCACGGGTCTGCTGATGAAATCATCGGTGTTGAAGATGCATTAGAGTTTGACAAGATTATACCTAACCACAAATTACATATCATAGAGGGAGCTAACCATAACTACAGCTCACATCAAGCCGAGTTGGCATCAGTTGTTGTGGACTTCATAAAGACATGTCTGCAGCAGGACAAGGCTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009812 GO:0009813 GO:0010224 GO:0016491 GO:0016705 GO:0016706 GO:0045486 GO:0050896 GO:0051213 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

298

Amino Acids

33.16

Weight (kDa)

7.27

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	69 - 179	9.4e-14	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	69 - 171	1.6e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	225, 651
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	4 cut(s)	147, 337, 417, 655
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	2 cut(s)	136, 743
AhlI	ACTAGT	1 cut(s)	248
AluBI	AGCT	3 cut(s)	294, 803, 819
AluI	AGCT	3 cut(s)	294, 803, 819
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	225, 651
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	99, 366
ApeKI	GCWGC	4 cut(s)	4, 75, 127, 874
ApoI	RAATTY	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	56, 133, 173
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	87, 139, 886
BccI	CCATC	2 cut(s)	52, 634
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	3 cut(s)	384, 814, 872
BglI	GCCNNNNNGGC	1 cut(s)	836
BisI	GCNGC	4 cut(s)	5, 76, 128, 875
BlsI	GCNGC	4 cut(s)	6, 77, 129, 876
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	736, 848
BpuMI	CCSGG	1 cut(s)	119
BsaBI	GATNNNNATC	2 cut(s)	43, 209
BsaJI	CCNNGG	2 cut(s)	430, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	2 cut(s)	43, 209
BseDI	CCNNGG	2 cut(s)	430, 712
BseJI	GATNNNNATC	2 cut(s)	43, 209
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	618
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	87, 139, 886
BshFI	GGCC	2 cut(s)	101, 368
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	101, 368
Bsp1286I	GDGCHC	2 cut(s)	438, 462
Bsp143I	GATC	2 cut(s)	230, 643
BspANI	GGCC	2 cut(s)	101, 368
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	2 cut(s)	225, 651
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	430, 712
BssMI	GATC	2 cut(s)	230, 643
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	440, 496
Bst6I	CTCTTC	2 cut(s)	66, 521
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	381, 673
BstDEI	CTNAG	4 cut(s)	35, 627, 650, 894
BstDSI	CCRYGG	1 cut(s)	712
BstKTI	GATC	2 cut(s)	233, 646
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	230, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 263, 836
BstNSI	RCATGY	3 cut(s)	383, 675, 870
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	3 cut(s)	384, 814, 872
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	3 cut(s)	87, 139, 886
BsuRI	GGCC	2 cut(s)	101, 368
BtgI	CCRYGG	1 cut(s)	712
BtgZI	GCGATG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	381, 673
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	146, 336, 416, 654
CviAII	CATG	7 cut(s)	158, 185, 221, 380, 665, 672, 867
CviJI	RGCY	9 cut(s)	78, 101, 177, 294, 368, 803, 819, 830, 887
CviKI_1	RGCY	9 cut(s)	78, 101, 177, 294, 368, 803, 819, 830, 887
CviQI	GTAC	4 cut(s)	146, 336, 416, 654
DdeI	CTNAG	4 cut(s)	35, 627, 650, 894
DpnI	GATC	2 cut(s)	232, 645
DpnII	GATC	2 cut(s)	230, 643
Eam1104I	CTCTTC	2 cut(s)	66, 521
EarI	CTCTTC	2 cut(s)	66, 521
Eco130I	CCWWGG	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	2 cut(s)	666, 751
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	7 cut(s)	161, 188, 224, 383, 668, 675, 870
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	7 cut(s)	157, 184, 220, 379, 664, 671, 866
Fnu4HI	GCNGC	4 cut(s)	5, 76, 128, 875
Fsp4HI	GCNGC	4 cut(s)	5, 76, 128, 875
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	4 cut(s)	5, 76, 128, 875
HaeIII	GGCC	2 cut(s)	101, 368
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	7 cut(s)	161, 188, 224, 383, 668, 675, 870
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HinfI	GANTC	3 cut(s)	39, 87, 585
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	3 cut(s)	56, 133, 173
Hpy166II	GTNNAC	3 cut(s)	416, 705, 853
Hpy188I	TCNGA	2 cut(s)	600, 681
Hpy188III	TCNNGA	2 cut(s)	91, 574
Hpy8I	GTNNAC	3 cut(s)	416, 705, 853
HpyAV	CCTTC	6 cut(s)	278, 307, 326, 571, 575, 686
HpyCH4III	ACNGT	2 cut(s)	440, 496
HpyCH4V	TGCA	8 cut(s)	257, 272, 379, 425, 565, 664, 749, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 263, 836
HpyF3I	CTNAG	4 cut(s)	35, 627, 650, 894
Hsp92II	CATG	7 cut(s)	161, 188, 224, 383, 668, 675, 870
KpnI	GGTACC	1 cut(s)	339
KspAI	GTTAAC	1 cut(s)	705
Kzo9I	GATC	2 cut(s)	230, 643
LmnI	GCTCC	3 cut(s)	299, 465, 800
LpnPI	CCDG	7 cut(s)	116, 132, 177, 183, 300, 495, 863
Lsp1109I	GCAGC	3 cut(s)	87, 139, 886
LweI	GCATC	2 cut(s)	736, 848
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	232, 645
MboI	GATC	2 cut(s)	230, 643
MboII	GAAGA	3 cut(s)	53, 538, 755
MfeI	CAATTG	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	438, 462
MluCI	AATT	4 cut(s)	13, 131, 288, 782
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	244, 358, 440, 524, 602, 622, 790
Mph1103I	ATGCAT	2 cut(s)	666, 751
MseI	TTAA	3 cut(s)	26, 537, 704
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	107, 263, 836
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	230, 643
NlaIII	CATG	7 cut(s)	161, 188, 224, 383, 668, 675, 870
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	856
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	2 cut(s)	666, 751
NspI	RCATGY	3 cut(s)	383, 675, 870
PaeI	GCATGC	2 cut(s)	383, 675
PciI	ACATGT	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	39, 87, 585
PkrI	GCNGC	4 cut(s)	6, 77, 129, 876
PscI	ACATGT	1 cut(s)	866
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	147, 337, 417, 655
RsaNI	GTAC	4 cut(s)	146, 336, 416, 654
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	26, 537, 704
SatI	GCNGC	4 cut(s)	5, 76, 128, 875
Sau3AI	GATC	2 cut(s)	230, 643
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	438, 462
SetI	ASST	8 cut(s)	196, 296, 337, 341, 451, 775, 805, 821
SfaNI	GCATC	2 cut(s)	736, 848
SfcI	CTRYAG	3 cut(s)	384, 814, 872
SmiMI	CAYNNNNRTG	1 cut(s)	399
SpeI	ACTAGT	1 cut(s)	248
SphI	GCATGC	2 cut(s)	383, 675
Sse9I	AATT	4 cut(s)	13, 131, 288, 782
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	440, 496
TaqI	TCGA	1 cut(s)	229
TasI	AATT	4 cut(s)	13, 131, 288, 782
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	3 cut(s)	39, 87, 585
Tru1I	TTAA	3 cut(s)	26, 537, 704
Tru9I	TTAA	3 cut(s)	26, 537, 704
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	4 cut(s)	4, 75, 127, 874
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	6 cut(s)	297, 539, 577, 681, 741, 847
TspGWI	ACGGA	1 cut(s)	290
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	3 cut(s)	383, 675, 870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	2 cut(s)	666, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.