Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007829.1

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Forward (+)

804 .. 2194

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttgacatatgactggtctcttggctttactgctatttctggaactgaagagatttgcattggcggtcagcggttgattgccattttctctccgggacatacagatggccatatgggactgcttcatgccagtactcactcattgattgtaggtgatcattgtgtgggtcaaggtagtgccatactggatgttacttccgggggaaatatgactgattactttcaatcaacatacaaatttatggagatttccccacatgctttgatccccatgcatgggagagttaacctctggccaaagcacatgctttgtggatatctcaggaaccgtagaggtagagaaagttccatcttgaaagcgatagaaaatggagctgaaacattatttgatatagttgcaaatgtatattctgaggttgaccgtagcttttggattcctgctgcatcaaatgtgaggcttcacgtggatcatctaagccagcaagataagttgccaaaggtaaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

170

Amino Acids

18.82

Weight (kDa)

6.53

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 73
AclWI	GGATC	2 cut(s)	262, 477
AcoI	YGGCCR	2 cut(s)	109, 296
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	69
AcvI	CACGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	278, 279
AgsI	TTSAA	2 cut(s)	227, 358
AluBI	AGCT	2 cut(s)	377, 429
AluI	AGCT	2 cut(s)	377, 429
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	262, 477
AoxI	GGCC	2 cut(s)	109, 296
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	96, 202
AsuHPI	GGTGA	1 cut(s)	167
BalI	TGGCCA	2 cut(s)	111, 298
BbrPI	CACGTG	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	101, 359
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	96, 202
BcoDI	GTCTC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	96, 202
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	96, 202
BmsI	GCATC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
BpuMI	CCSGG	2 cut(s)	96, 202
BsaAI	YACGTR	1 cut(s)	466
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 279
Bse1I	ACTGG	3 cut(s)	20, 132, 192
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	278, 279
BseMII	CTCAG	2 cut(s)	337, 405
BseNI	ACTGG	3 cut(s)	20, 132, 192
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	111, 298
BsiSI	CCGG	2 cut(s)	95, 201
BslFI	GGGAC	2 cut(s)	111, 132
BslI	CCNNNNNNNGG	2 cut(s)	278, 279
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	2 cut(s)	111, 132
BsnI	GGCC	2 cut(s)	111, 298
Bso31I	GGTCTC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	157, 267, 469
BspACI	CCGC	2 cut(s)	66, 73
BspANI	GGCC	2 cut(s)	111, 298
BspCNI	CTCAG	2 cut(s)	336, 406
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	262, 477
BspTNI	GGTCTC	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	20, 132, 192
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	157, 267, 469
Bst4CI	ACNGT	2 cut(s)	332, 425
Bst6I	CTCTTC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	3 cut(s)	323, 414, 476
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	160, 270, 472
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	157, 267, 469
BstNSI	RCATGY	2 cut(s)	263, 310
BstSCI	CCNGG	2 cut(s)	94, 200
BstV1I	GCAGC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	111, 298
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	5 cut(s)	128, 260, 274, 278, 307
CviJI	RGCY	7 cut(s)	27, 111, 298, 377, 429, 460, 480
CviKI_1	RGCY	7 cut(s)	27, 111, 298, 377, 429, 460, 480
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	323, 414, 476
DpnI	GATC	3 cut(s)	159, 269, 471
DpnII	GATC	3 cut(s)	157, 267, 469
EaeI	YGGCCR	2 cut(s)	109, 296
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	279
FaeI	CATG	5 cut(s)	131, 263, 277, 281, 310
FaqI	GGGAC	2 cut(s)	111, 132
FatI	CATG	5 cut(s)	127, 259, 273, 277, 306
FauNDI	CATATG	2 cut(s)	10, 114
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	111, 298
HapII	CCGG	2 cut(s)	95, 201
Hin1II	CATG	5 cut(s)	131, 263, 277, 281, 310
HincII	GTYRAC	3 cut(s)	6, 289, 421
HindII	GTYRAC	3 cut(s)	6, 289, 421
HinfI	GANTC	1 cut(s)	436
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	95, 201
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	6, 289, 421
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	42, 325, 355
Hpy8I	GTNNAC	3 cut(s)	6, 289, 421
HpyCH4III	ACNGT	2 cut(s)	332, 425
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	4 cut(s)	60, 277, 401, 446
HpyF3I	CTNAG	3 cut(s)	323, 414, 476
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	5 cut(s)	131, 263, 277, 281, 310
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	157, 267, 469
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	9 cut(s)	27, 108, 145, 173, 214, 280, 310, 453, 494
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	455
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	159, 269, 471
MboI	GATC	3 cut(s)	157, 267, 469
MboII	GAAGA	1 cut(s)	62
MlsI	TGGCCA	2 cut(s)	111, 298
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	2 cut(s)	111, 298
MnlI	CCTC	4 cut(s)	302, 329, 409, 450
Mox20I	TGGCCA	2 cut(s)	111, 298
Mph1103I	ATGCAT	1 cut(s)	279
MscI	TGGCCA	2 cut(s)	111, 298
MseI	TTAA	2 cut(s)	288, 511
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	2 cut(s)	111, 298
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	95, 201
MspR9I	CCNGG	2 cut(s)	96, 202
NciI	CCSGG	2 cut(s)	96, 202
NdeI	CATATG	2 cut(s)	10, 114
NdeII	GATC	3 cut(s)	157, 267, 469
NlaIII	CATG	5 cut(s)	131, 263, 277, 281, 310
NlaIV	GGNNCC	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	2 cut(s)	263, 310
PfeI	GAWTC	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	445
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
PspCI	CACGTG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	331, 363
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	288, 511
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	157, 267, 469
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	96, 202
SfaNI	GCATC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	66, 73
StyD4I	CCNGG	2 cut(s)	94, 200
TaaI	ACNGT	2 cut(s)	332, 425
TaiI	ACGT	1 cut(s)	468
TasI	AATT	1 cut(s)	239
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	288, 511
Tru9I	TTAA	2 cut(s)	288, 511
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	116
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	2 cut(s)	263, 310
ZrmI	AGTACT	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.